Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 39545575
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|39545575 hypothetical protein LOC55924 isoform 2 [Homo
sapiens]
(282 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|39545575 hypothetical protein LOC55924 isoform 2 [Homo sapiens] 592 e-169
gi|9506861 hypothetical protein LOC55924 isoform 1 [Homo sapiens] 587 e-168
gi|42766424 hypothetical protein LOC389119 [Homo sapiens] 80 2e-15
gi|148806874 hypothetical protein LOC54754 [Homo sapiens] 37 0.025
gi|113865921 hypothetical protein LOC441457 [Homo sapiens] 35 0.057
gi|239752979 PREDICTED: hypothetical protein XP_002345320 [Homo ... 35 0.074
gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens] 34 0.13
gi|223646109 family with sequence similarity 157, member A [Homo... 33 0.22
gi|223646111 family with sequence similarity 157, member B [Homo... 33 0.22
gi|209862789 microtubule associated monoxygenase, calponin and L... 33 0.22
gi|221139761 zinc finger protein 853 [Homo sapiens] 33 0.28
gi|239745655 PREDICTED: family with sequence similarity 157, mem... 33 0.28
gi|208022703 modulator of retrovirus infection [Homo sapiens] 33 0.28
gi|156104878 glutaminase [Homo sapiens] 32 0.48
gi|4758220 XAP-5 protein [Homo sapiens] 32 0.63
gi|33286446 opioid growth factor receptor [Homo sapiens] 32 0.63
gi|239508696 PREDICTED: hypothetical protein [Homo sapiens] 32 0.63
gi|5902084 silver homolog [Homo sapiens] 32 0.63
gi|112734845 collagen, type XX, alpha 1 [Homo sapiens] 32 0.63
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 32 0.63
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 32 0.63
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 32 0.63
gi|239747560 PREDICTED: hypothetical protein XP_002347649 [Homo ... 32 0.82
gi|239741434 PREDICTED: hypothetical protein XP_002342199 [Homo ... 32 0.82
gi|27262653 ataxin 2 related protein isoform E [Homo sapiens] 32 0.82
gi|239743047 PREDICTED: similar to family with sequence similari... 31 1.1
gi|239757944 PREDICTED: hypothetical protein [Homo sapiens] 31 1.4
gi|169171742 PREDICTED: hypothetical protein LOC442676 [Homo sap... 31 1.4
gi|169172340 PREDICTED: hypothetical protein LOC442676 [Homo sap... 31 1.4
gi|169170016 PREDICTED: hypothetical protein LOC442676 [Homo sap... 31 1.4
>gi|39545575 hypothetical protein LOC55924 isoform 2 [Homo sapiens]
Length = 282
Score = 592 bits (1526), Expect = e-169
Identities = 282/282 (100%), Positives = 282/282 (100%)
Query: 1 MRQLMSMKEVGDGLQDQMNCMMGALQELKLLQVQTALEQLEISGGGPVPGSPEGPRTQCE 60
MRQLMSMKEVGDGLQDQMNCMMGALQELKLLQVQTALEQLEISGGGPVPGSPEGPRTQCE
Sbjct: 1 MRQLMSMKEVGDGLQDQMNCMMGALQELKLLQVQTALEQLEISGGGPVPGSPEGPRTQCE 60
Query: 61 HPCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLPRTQPHQSCAQQGPER 120
HPCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLPRTQPHQSCAQQGPER
Sbjct: 61 HPCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLPRTQPHQSCAQQGPER 120
Query: 121 VEPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGEKGETGGAREPKGEKG 180
VEPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGEKGETGGAREPKGEKG
Sbjct: 121 VEPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGEKGETGGAREPKGEKG 180
Query: 181 QPQELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVPESRTGRSQKVKKRSLSK 240
QPQELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVPESRTGRSQKVKKRSLSK
Sbjct: 181 QPQELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVPESRTGRSQKVKKRSLSK 240
Query: 241 GSGHFPFPGTGEHRRGENPPTSCPKALEHSPSGFDINTAVWV 282
GSGHFPFPGTGEHRRGENPPTSCPKALEHSPSGFDINTAVWV
Sbjct: 241 GSGHFPFPGTGEHRRGENPPTSCPKALEHSPSGFDINTAVWV 282
>gi|9506861 hypothetical protein LOC55924 isoform 1 [Homo sapiens]
Length = 297
Score = 587 bits (1514), Expect = e-168
Identities = 279/281 (99%), Positives = 281/281 (100%)
Query: 2 RQLMSMKEVGDGLQDQMNCMMGALQELKLLQVQTALEQLEISGGGPVPGSPEGPRTQCEH 61
++LMSMKEVGDGLQDQMNCMMGALQELKLLQVQTALEQLEISGGGPVPGSPEGPRTQCEH
Sbjct: 17 QELMSMKEVGDGLQDQMNCMMGALQELKLLQVQTALEQLEISGGGPVPGSPEGPRTQCEH 76
Query: 62 PCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLPRTQPHQSCAQQGPERV 121
PCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLPRTQPHQSCAQQGPERV
Sbjct: 77 PCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLPRTQPHQSCAQQGPERV 136
Query: 122 EPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGEKGETGGAREPKGEKGQ 181
EPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGEKGETGGAREPKGEKGQ
Sbjct: 137 EPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGEKGETGGAREPKGEKGQ 196
Query: 182 PQELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVPESRTGRSQKVKKRSLSKG 241
PQELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVPESRTGRSQKVKKRSLSKG
Sbjct: 197 PQELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVPESRTGRSQKVKKRSLSKG 256
Query: 242 SGHFPFPGTGEHRRGENPPTSCPKALEHSPSGFDINTAVWV 282
SGHFPFPGTGEHRRGENPPTSCPKALEHSPSGFDINTAVWV
Sbjct: 257 SGHFPFPGTGEHRRGENPPTSCPKALEHSPSGFDINTAVWV 297
>gi|42766424 hypothetical protein LOC389119 [Homo sapiens]
Length = 287
Score = 80.1 bits (196), Expect = 2e-15
Identities = 50/123 (40%), Positives = 67/123 (54%), Gaps = 11/123 (8%)
Query: 77 SPSSQPSLG-----SSTKFPSHRSVCGRDLAPLPRTQPHQSCAQQGPERVEPDDWTSTLM 131
+PS+QP S PS V PR + + + +E +DWT+ L+
Sbjct: 118 APSAQPLRRQCLSVSGLPMPSRAPVASVPPVHHPRPKSTPDACLEHWQGLEAEDWTAALL 177
Query: 132 SRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGEKGETGG----AREPKGEKGQPQELGR 187
+RGR+RQPLVLGDN FADLV NW++LP E G E G+ GG AR P+ G ++L R
Sbjct: 178 NRGRSRQPLVLGDNCFADLVHNWMELP--ETGSEGGDGGGHRARARPPQFLLGLSEQLRR 235
Query: 188 RFA 190
R A
Sbjct: 236 RLA 238
>gi|148806874 hypothetical protein LOC54754 [Homo sapiens]
Length = 756
Score = 36.6 bits (83), Expect = 0.025
Identities = 36/142 (25%), Positives = 50/142 (35%), Gaps = 32/142 (22%)
Query: 49 PGSPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTKF---PSHRSVCGRDLAPLP 105
P P P + GP PT C P +P + TK P A LP
Sbjct: 315 PRGPPAPEVVKQPVYLPSKDGPKAPTACLPPPRPQRPAETKAHLPPPRPQRPAETNAHLP 374
Query: 106 RTQPHQSCAQQGPERVEPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGE 165
+P + + PE + P ++V ++D+ E G
Sbjct: 375 PPRPQRPAETKVPEEIPP-------------------------EVVQEYVDIMEELLGSH 409
Query: 166 KGETG---GAREPKGEKGQPQE 184
G+TG G RE KG+ QPQE
Sbjct: 410 PGDTGEPEGQRE-KGKVEQPQE 430
>gi|113865921 hypothetical protein LOC441457 [Homo sapiens]
Length = 492
Score = 35.4 bits (80), Expect = 0.057
Identities = 35/139 (25%), Positives = 49/139 (35%), Gaps = 41/139 (29%)
Query: 49 PGSPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLPRTQ 108
P P P + GP PT C P +P + TK A LP +
Sbjct: 315 PRGPPAPEVVKQPVYLPSKDGPKAPTACLPPPRPQRPAETK------------AHLPPPR 362
Query: 109 PHQSCAQQGPERVEPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGEKGE 168
P + + PE + P ++V ++D+ E G G+
Sbjct: 363 PPRPAETKVPEEIPP-------------------------EVVQEYVDIMEELLGSHPGD 397
Query: 169 TG---GAREPKGEKGQPQE 184
TG G RE KG+ QPQE
Sbjct: 398 TGEPEGQRE-KGKVEQPQE 415
>gi|239752979 PREDICTED: hypothetical protein XP_002345320 [Homo
sapiens]
Length = 243
Score = 35.0 bits (79), Expect = 0.074
Identities = 41/130 (31%), Positives = 56/130 (43%), Gaps = 22/130 (16%)
Query: 61 HPCWEGGRGPA-RPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLPRTQPHQSCAQQGPE 119
HP GPA R T PSSQPS G+++ F + S RDL P H +C QQG +
Sbjct: 100 HPSPSCFSGPAERSTERWPSSQPSCGAASTFGAVDSP-ERDLD--PEVAVHSNC-QQGQD 155
Query: 120 RVEPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGEKGETG----GAREP 175
+D T G++ VG W ++ E +G ++G G R
Sbjct: 156 GALGEDEDRT-------------GNHEAGVEVGLWPNVDEDGEGDDQGTHGHISHRQRHD 202
Query: 176 KGEKGQPQEL 185
+ E G PQ L
Sbjct: 203 EAEGGIPQRL 212
>gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]
Length = 540
Score = 34.3 bits (77), Expect = 0.13
Identities = 46/160 (28%), Positives = 60/160 (37%), Gaps = 42/160 (26%)
Query: 49 PGSPEGPRTQCEHPCWEGGRG-PARPTVCSPSSQP-SLGSSTKFPSHRSVCGRDLAPLPR 106
P P GP+ + P +G G P++P P +P S+G R G D AP P+
Sbjct: 227 PKGPPGPKGEPGVPGKKGDDGTPSQPGPPGPKGEPGSMGP-------RGENGVDGAPGPK 279
Query: 107 TQP-HQSCAQQGPERVEPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKG-- 163
+P H+ R P +G GD V D G LD + G
Sbjct: 280 GEPGHRGTDGAAGPRGAPG-------LKGEQ------GDTVVIDYDGRILDALKGPPGPQ 326
Query: 164 ---------GEKGETG--------GAREPKGEKGQPQELG 186
G KGE G G + PKG+KG P E G
Sbjct: 327 GPPGPPGIPGAKGELGLPGAPGIDGEKGPKGQKGDPGEPG 366
>gi|223646109 family with sequence similarity 157, member A [Homo
sapiens]
Length = 383
Score = 33.5 bits (75), Expect = 0.22
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 18/109 (16%)
Query: 170 GGAREPKG--EKGQP----QELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVP 223
GGA P G E+ QP LGRR L+ N + + + +P +LL+ G MVP
Sbjct: 231 GGAVIPTGTPERAQPPPPQDPLGRRRWLSRNTWGPWPGTTQPPSPQLLRNDWGSCGFMVP 290
Query: 224 ESRTGR----SQK---VKKRSLSKGSGHFPFPGTGEHRRGENP-PTSCP 264
E+ G+ SQ+ +++ ++SK P+ H+R +P PT+ P
Sbjct: 291 EAARGKVFQDSQEGAHIRRETVSKSVCAEPW----RHQRARDPAPTNFP 335
>gi|223646111 family with sequence similarity 157, member B [Homo
sapiens]
Length = 384
Score = 33.5 bits (75), Expect = 0.22
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 18/109 (16%)
Query: 170 GGAREPKG--EKGQP----QELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVP 223
GGA P G E+ QP LGRR L+ N + + + +P +LL+ G MVP
Sbjct: 232 GGAVIPTGTPERAQPPPPQDPLGRRRWLSRNTWGPWPGTTQPPSPQLLRNDWGSCGFMVP 291
Query: 224 ESRTGR----SQK---VKKRSLSKGSGHFPFPGTGEHRRGENP-PTSCP 264
E+ G+ SQ+ +++ ++SK P+ H+R +P PT+ P
Sbjct: 292 EAARGKVFQDSQEGAHIRRETVSKSVCAEPW----RHQRARDPAPTNFP 336
>gi|209862789 microtubule associated monoxygenase, calponin and LIM
domain containing 3 isoform 1 [Homo sapiens]
Length = 2002
Score = 33.5 bits (75), Expect = 0.22
Identities = 55/205 (26%), Positives = 79/205 (38%), Gaps = 40/205 (19%)
Query: 68 RGPARPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLPRTQPHQSCAQQGPERVEP-DDW 126
R P P SP QP + +ST PS +C + P P T+ Q P R +P
Sbjct: 1234 RTPVSPG--SPQPQPPVAASTPPPSPLPICSQ---PQPSTEATVPSPTQSPIRFQPAPAK 1288
Query: 127 TSTLM----------SRGRNRQPLVLGDNV-FADLVGN-WLDLPEL-----------EKG 163
TST + ++ R PL + + + +DLV W+ E+ KG
Sbjct: 1289 TSTPLAPLPVQSQSDTKDRLGSPLAVDEALRRSDLVEEFWMKSAEIRRSLGLTPVDRSKG 1348
Query: 164 GEKGETGGAREPKGEKG-----QPQELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWV 218
E A P K PQ+ G +I K+ L +P+ + L
Sbjct: 1349 PEPSFPTPAFRPVSLKSYSVEKSPQDEGLHLLKPLSIPKR-LGLPKPEGEPL-----SLP 1402
Query: 219 TPMVPESRTGRSQKVKKRSLSKGSG 243
TP P R RS + ++R LS SG
Sbjct: 1403 TPRSPSDRELRSAQEERRELSSSSG 1427
>gi|221139761 zinc finger protein 853 [Homo sapiens]
Length = 659
Score = 33.1 bits (74), Expect = 0.28
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 37 LEQLEISGGGP--VPGSPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHR 94
L+ LE G GP + G G +Q E E P RP V +P + T+ P R
Sbjct: 29 LQCLEDGGPGPDTLSGGSGGSESQEEEEPQERNSSPQRPAVSAPVGASEIAEETR-PGQR 87
Query: 95 SVCGRDL--APLPRTQPHQSCAQQGPERVE 122
+ + L P P+ QP QQ +E
Sbjct: 88 ELQLQQLEQQPEPQQQPQHEQLQQPQPHLE 117
>gi|239745655 PREDICTED: family with sequence similarity 157, member
C [Homo sapiens]
Length = 387
Score = 33.1 bits (74), Expect = 0.28
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 18/109 (16%)
Query: 170 GGAREPKG--EKGQPQE----LGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVP 223
GGA P G E+ QP LGRR L+ N + + + +P +LL+ G MVP
Sbjct: 235 GGAVIPTGTPERAQPPPPQDLLGRRRWLSRNTWGPWPGTTQPPSPQLLRNDWGSCGFMVP 294
Query: 224 ESRTGR----SQK---VKKRSLSKGSGHFPFPGTGEHRRGENP-PTSCP 264
E+ G+ SQ+ +++ ++SK P+ H+R +P PT+ P
Sbjct: 295 EAARGKVFQDSQEGAHIRRETVSKSVCAEPW----RHQRARDPAPTNFP 339
>gi|208022703 modulator of retrovirus infection [Homo sapiens]
Length = 157
Score = 33.1 bits (74), Expect = 0.28
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 59 CEHPCWEGGRGPARPTVCSPSSQPSLGSST-KFPSHRSVCGRDLAPLPRTQPHQSCAQQG 117
CE P G P CS S S GSS+ + S + L+P R S +
Sbjct: 79 CEQPALAGADNPEHSPPCSVSPHTSSGSSSEEEDSGKQALAPGLSPSQRPGGSSSACSRS 138
Query: 118 PERVEPDD 125
PE E +D
Sbjct: 139 PEEEEEED 146
>gi|156104878 glutaminase [Homo sapiens]
Length = 669
Score = 32.3 bits (72), Expect = 0.48
Identities = 30/99 (30%), Positives = 35/99 (35%), Gaps = 14/99 (14%)
Query: 23 GALQELKLLQVQTALEQLEISGGGPVPGSPEGPRTQCEHPCWEGGRGPARPTVCSPSSQP 82
G L+ Q L + GG P G R HP W GG PA P SS P
Sbjct: 20 GVSATLRRAQPLVTLCRRPRGGGRPAAGPAAAARL---HPWWGGGGWPAEPLARGLSSSP 76
Query: 83 S--LGSSTKFPSHRSVCGRDLAPLPRTQPHQSCAQQGPE 119
S L K +H P P P + A GP+
Sbjct: 77 SEILQELGKGSTH---------PQPGVSPPAAPAAPGPK 106
>gi|4758220 XAP-5 protein [Homo sapiens]
Length = 339
Score = 32.0 bits (71), Expect = 0.63
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 15/118 (12%)
Query: 157 LPELEKGGEKGETGGAREPKGEKGQPQELGRRFALTANIFKKFLRSVRPDRDRLLKEKPG 216
L E E+GGE+ E E + E+ + R+ ++ FL PDRDR +E+
Sbjct: 124 LEEEEEGGEEEEEAAMYEEEMEREEITTKKRKLGKNPDVDTSFL----PDRDR--EEEEN 177
Query: 217 WVTPMVPESRTGRSQKVKKRSLS------KGSGHFPFPGTGEHRRGENPPTSCPKALE 268
+ + + + +K+K + GSGH T + R+G KALE
Sbjct: 178 RLREELRQEWEAKQEKIKSEEIEITFSYWDGSGH---RRTVKMRKGNTMQQFLQKALE 232
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 32.0 bits (71), Expect = 0.63
Identities = 47/180 (26%), Positives = 66/180 (36%), Gaps = 26/180 (14%)
Query: 23 GALQELKLLQVQTALEQLEISGGGPVPGSPEGPRTQCEHPCWEGGRGPARPTVCSPSSQP 82
G +L+ + + LE S GSP P +H GR C P
Sbjct: 287 GPQDKLRRFKPSSLPHPLEGSRKVEEEGSPGDP----DHEASTQGR------TCGPEHSK 336
Query: 83 SLGSSTKFPSHRSVCGRDLAPLPRTQPHQS--CAQQGPERVEPDDWTSTLMSRGRNRQPL 140
G + P RSV +D PL R+Q ++ + PE + P + + R QP
Sbjct: 337 GGGRVDEGPQPRSVEPQDAGPLERSQGDEAGGHGEDRPEPLSPKESKKRKLELSRREQPP 396
Query: 141 VLG--------DNVFADLVGNWLDLPELEKGGEKGETGGAREPKGEKGQP--QELGRRFA 190
+ + +L G L L G + E GG + GE QP Q LG R A
Sbjct: 397 TEPGPQSASEVEKIALNLEGCALSQGSLRTGTQ--EVGG--QDPGEAVQPCRQPLGARVA 452
Score = 28.9 bits (63), Expect = 5.3
Identities = 26/78 (33%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 46 GPVPGSPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLP 105
GP P P G E P G PA PT P+ P S T P G + A P
Sbjct: 563 GPRPAGPAGDEP-AESPSETPGPSPAGPTRDEPAESP---SETPGPRPAGPAGDEPAESP 618
Query: 106 RTQPHQSCAQQGPERVEP 123
P A GP EP
Sbjct: 619 SETPGPRPA--GPAGDEP 634
>gi|239508696 PREDICTED: hypothetical protein [Homo sapiens]
Length = 385
Score = 32.0 bits (71), Expect = 0.63
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 36 ALEQLEISGGGPVPGSPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRS 95
AL L+++ GP S + + Q H GP+RP++C PS+ S+++ H
Sbjct: 48 ALNFLKLTSPGPAHASLQPLQAQLLHL-----GGPSRPSLCLPSASTVPTSASQQILHAQ 102
Query: 96 VCGRDLAPLPRTQPHQS 112
+ P P +QP S
Sbjct: 103 LLPHCGPPKPSSQPFSS 119
>gi|5902084 silver homolog [Homo sapiens]
Length = 661
Score = 32.0 bits (71), Expect = 0.63
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 44 GGGPVPGSPEGPRTQCEHPCWEGGRGPARPTV-----CSPSSQPSLGSSTKFPSHRSVCG 98
G PVPG+ +G R E P G+ P V +P+++PS +S + P+ +
Sbjct: 302 GSSPVPGTTDGHRPTAEAPNTTAGQVPTTEVVGTTPGQAPTAEPSGTTSVQVPTTEVI-- 359
Query: 99 RDLAPLPRTQPHQSCAQQGPERVEPDDWTSTLMS 132
+ P P PE+V + T ++
Sbjct: 360 ---STAPVQMPTAESTGMTPEKVPVSEVMGTTLA 390
>gi|112734845 collagen, type XX, alpha 1 [Homo sapiens]
Length = 1284
Score = 32.0 bits (71), Expect = 0.63
Identities = 43/169 (25%), Positives = 58/169 (34%), Gaps = 29/169 (17%)
Query: 45 GGPVPGSPEGPRTQCEHPCWEGGRGPARPT-VCSPSSQPSLGSSTKFPSHRSVCGRDLAP 103
G P P P G + P +G GP P V L P H+ + GR
Sbjct: 1072 GPPGPQGPPGLPGRNGTPGEQGFPGPRGPPGVKGEKGDHGLPGLQGHPGHQGIPGR---- 1127
Query: 104 LPRTQPHQSCAQQGPERVEPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKG 163
QGP+ + + T+ L P G F + G E
Sbjct: 1128 ---------VGLQGPKGMRGLEGTAGL--------PGPPGPRGFQGMAGARGTSGERGPP 1170
Query: 164 GEKGETG--GAREPKGEKGQPQELGRRFALTANI-----FKKFLRSVRP 205
G G TG G + +GEKG+PQ L + L + F F + RP
Sbjct: 1171 GTVGPTGLPGPKGERGEKGEPQSLATLYQLVSQASHVSKFDSFHENTRP 1219
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 32.0 bits (71), Expect = 0.63
Identities = 23/81 (28%), Positives = 28/81 (34%), Gaps = 10/81 (12%)
Query: 51 SPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTK--------FPSHRSVCGRDLA 102
+P+ P Q HP GG P P C +S P G T S S+ G
Sbjct: 475 APQPPFAQ--HPFVPGGPPPITPPTCPSTSTPPAGPGTSAQPPCSGAAASGGSIAGGSSC 532
Query: 103 PLPRTQPHQSCAQQGPERVEP 123
PLP Q + E P
Sbjct: 533 PLPTVQIKEEALDDAEEPESP 553
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 32.0 bits (71), Expect = 0.63
Identities = 23/81 (28%), Positives = 28/81 (34%), Gaps = 10/81 (12%)
Query: 51 SPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTK--------FPSHRSVCGRDLA 102
+P+ P Q HP GG P P C +S P G T S S+ G
Sbjct: 1029 APQPPFAQ--HPFVPGGPPPITPPTCPSTSTPPAGPGTSAQPPCSGAAASGGSIAGGSSC 1086
Query: 103 PLPRTQPHQSCAQQGPERVEP 123
PLP Q + E P
Sbjct: 1087 PLPTVQIKEEALDDAEEPESP 1107
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 32.0 bits (71), Expect = 0.63
Identities = 23/81 (28%), Positives = 28/81 (34%), Gaps = 10/81 (12%)
Query: 51 SPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTK--------FPSHRSVCGRDLA 102
+P+ P Q HP GG P P C +S P G T S S+ G
Sbjct: 1029 APQPPFAQ--HPFVPGGPPPITPPTCPSTSTPPAGPGTSAQPPCSGAAASGGSIAGGSSC 1086
Query: 103 PLPRTQPHQSCAQQGPERVEP 123
PLP Q + E P
Sbjct: 1087 PLPTVQIKEEALDDAEEPESP 1107
>gi|239747560 PREDICTED: hypothetical protein XP_002347649 [Homo
sapiens]
Length = 284
Score = 31.6 bits (70), Expect = 0.82
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 21/112 (18%)
Query: 78 PSSQPSLGSSTKFPSHRSVCGRDLAPLPRTQPHQSCAQQGPERVEPDDWTSTLMSRGRNR 137
PSSQPS G+++ F + S RDL P H +C QQG + +D T
Sbjct: 159 PSSQPSCGAASTFGAVDSP-ERDLD--PEVAVHSNC-QQGQDGALGEDEDRT-------- 206
Query: 138 QPLVLGDNVFADLVGNWLDLPELEKGGEKGETG----GAREPKGEKGQPQEL 185
G++ VG W ++ E +G ++G G R + E G PQ L
Sbjct: 207 -----GNHEAGVEVGLWPNVDEDGEGDDQGTHGHISHRQRHDEAEGGIPQRL 253
>gi|239741434 PREDICTED: hypothetical protein XP_002342199 [Homo
sapiens]
Length = 284
Score = 31.6 bits (70), Expect = 0.82
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 21/112 (18%)
Query: 78 PSSQPSLGSSTKFPSHRSVCGRDLAPLPRTQPHQSCAQQGPERVEPDDWTSTLMSRGRNR 137
PSSQPS G+++ F + S RDL P H +C QQG + +D T
Sbjct: 159 PSSQPSCGAASTFGAVDSP-ERDLD--PEVAVHSNC-QQGQDGALGEDEDRT-------- 206
Query: 138 QPLVLGDNVFADLVGNWLDLPELEKGGEKGETG----GAREPKGEKGQPQEL 185
G++ VG W ++ E +G ++G G R + E G PQ L
Sbjct: 207 -----GNHEAGVEVGLWPNVDEDGEGDDQGTHGHISHRQRHDEAEGGIPQRL 253
>gi|27262653 ataxin 2 related protein isoform E [Homo sapiens]
Length = 1044
Score = 31.6 bits (70), Expect = 0.82
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 47 PVPGSPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLP 105
P PG+P P+ HP G GP + V S P+L +ST PS G APLP
Sbjct: 978 PHPGAPHPPQVMLLHPPQSHG-GPPQGAV-PQSGVPALSAST--PSPYPYIGHPQAPLP 1032
>gi|239743047 PREDICTED: similar to family with sequence similarity
157, member B [Homo sapiens]
Length = 384
Score = 31.2 bits (69), Expect = 1.1
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 18/108 (16%)
Query: 171 GAREPKG--EKGQP----QELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVPE 224
GA P G E+ QP LGRR L+ N + + + +P +LL+ G MVPE
Sbjct: 233 GAVIPTGTPERAQPPPPQDPLGRRRWLSRNTWGPWPGTTQPPSPQLLRNDWGSCGFMVPE 292
Query: 225 SRTGR----SQK---VKKRSLSKGSGHFPFPGTGEHRRGENP-PTSCP 264
+ G+ SQ+ +++ ++SK P+ H+R +P PT+ P
Sbjct: 293 AARGKVFQDSQEGAHIRRETVSKSVCAEPW----RHQRARDPAPTNFP 336
>gi|239757944 PREDICTED: hypothetical protein [Homo sapiens]
Length = 600
Score = 30.8 bits (68), Expect = 1.4
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 215 PGWVTPMVPESRTGR--SQKVKKRSLSKGSGHFPFPGTGEHRRGENPPTSCPKALEHSPS 272
PGW E TGR S+K + GS FPF G R + P S P L HSP
Sbjct: 94 PGW--GCWDEESTGRVVSEKGGANQID-GSSQFPFL-PGHRGRTHHFPHSAPSGLGHSPG 149
Query: 273 GFDINTA 279
D A
Sbjct: 150 NHDTGAA 156
>gi|169171742 PREDICTED: hypothetical protein LOC442676 [Homo
sapiens]
Length = 679
Score = 30.8 bits (68), Expect = 1.4
Identities = 25/91 (27%), Positives = 29/91 (31%), Gaps = 8/91 (8%)
Query: 36 ALEQLEISGGGPVPGSPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRS 95
AL L + P GP C HP +G P P SQP G P S
Sbjct: 470 ALAPLTLISSSRSHSRPPGPL--CTHPPLQGFFCPC------PDSQPCGGPDPTSPGSDS 521
Query: 96 VCGRDLAPLPRTQPHQSCAQQGPERVEPDDW 126
D PLP + H P + W
Sbjct: 522 DAALDAPPLPLPESHPCLTPPHPAQALVQPW 552
>gi|169172340 PREDICTED: hypothetical protein LOC442676 [Homo
sapiens]
Length = 679
Score = 30.8 bits (68), Expect = 1.4
Identities = 25/91 (27%), Positives = 29/91 (31%), Gaps = 8/91 (8%)
Query: 36 ALEQLEISGGGPVPGSPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRS 95
AL L + P GP C HP +G P P SQP G P S
Sbjct: 470 ALAPLTLISSSRSHSRPPGPL--CTHPPLQGFFCPC------PDSQPCGGPDPTSPGSDS 521
Query: 96 VCGRDLAPLPRTQPHQSCAQQGPERVEPDDW 126
D PLP + H P + W
Sbjct: 522 DAALDAPPLPLPESHPCLTPPHPAQALVQPW 552
>gi|169170016 PREDICTED: hypothetical protein LOC442676 [Homo
sapiens]
Length = 679
Score = 30.8 bits (68), Expect = 1.4
Identities = 25/91 (27%), Positives = 29/91 (31%), Gaps = 8/91 (8%)
Query: 36 ALEQLEISGGGPVPGSPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRS 95
AL L + P GP C HP +G P P SQP G P S
Sbjct: 470 ALAPLTLISSSRSHSRPPGPL--CTHPPLQGFFCPC------PDSQPCGGPDPTSPGSDS 521
Query: 96 VCGRDLAPLPRTQPHQSCAQQGPERVEPDDW 126
D PLP + H P + W
Sbjct: 522 DAALDAPPLPLPESHPCLTPPHPAQALVQPW 552
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.134 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,370,239
Number of Sequences: 37866
Number of extensions: 851750
Number of successful extensions: 2929
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 132
Number of HSP's that attempted gapping in prelim test: 2815
Number of HSP's gapped (non-prelim): 287
length of query: 282
length of database: 18,247,518
effective HSP length: 101
effective length of query: 181
effective length of database: 14,423,052
effective search space: 2610572412
effective search space used: 2610572412
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.