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Search of human proteins with 38679888
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38679888 RAB6A, member RAS oncogene family isoform b [Homo
sapiens]
(208 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38679888 RAB6A, member RAS oncogene family isoform b [Homo sa... 412 e-115
gi|19923231 RAB6A, member RAS oncogene family isoform a [Homo sa... 408 e-114
gi|96975097 RAB6B, member RAS oncogene family [Homo sapiens] 384 e-107
gi|116875763 RAB6C, member RAS oncogene family [Homo sapiens] 369 e-103
gi|117938299 RAB6C-like [Homo sapiens] 368 e-102
gi|74096429 RAB41, member RAS oncogene family [Homo sapiens] 257 4e-69
gi|41393614 RAB5C, member RAS oncogene family isoform a [Homo sa... 164 4e-41
gi|41393545 RAB5C, member RAS oncogene family isoform b [Homo sa... 164 4e-41
gi|19923262 RAB5A, member RAS oncogene family [Homo sapiens] 164 5e-41
gi|4506371 RAB5B, member RAS oncogene family [Homo sapiens] 157 5e-39
gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens] 153 1e-37
gi|16933567 mel transforming oncogene [Homo sapiens] 152 3e-37
gi|50234889 RAB43 protein [Homo sapiens] 152 3e-37
gi|33589861 RAB31, member RAS oncogene family [Homo sapiens] 147 8e-36
gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens] 146 1e-35
gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens] 145 3e-35
gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens] 145 3e-35
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens] 145 3e-35
gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens] 144 5e-35
gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens] 143 1e-34
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens] 142 2e-34
gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap... 142 2e-34
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa... 142 2e-34
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens] 142 2e-34
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens] 142 2e-34
gi|10190714 RAS-related protein RAB-22A [Homo sapiens] 142 2e-34
gi|21361884 RAB2B protein isoform 1 [Homo sapiens] 141 3e-34
gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo sa... 141 3e-34
gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo sa... 141 3e-34
gi|7661922 RAB21, member RAS oncogene family [Homo sapiens] 140 6e-34
>gi|38679888 RAB6A, member RAS oncogene family isoform b [Homo
sapiens]
Length = 208
Score = 412 bits (1059), Expect = e-115
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 60
MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR
Sbjct: 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 60
Query: 61 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 120
TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI
Sbjct: 61 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 120
Query: 121 IMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMEST 180
IMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMEST
Sbjct: 121 IMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMEST 180
Query: 181 QDRSREDMIDIKLEKPQEQPVSEGGCSC 208
QDRSREDMIDIKLEKPQEQPVSEGGCSC
Sbjct: 181 QDRSREDMIDIKLEKPQEQPVSEGGCSC 208
>gi|19923231 RAB6A, member RAS oncogene family isoform a [Homo
sapiens]
Length = 208
Score = 408 bits (1049), Expect = e-114
Identities = 205/208 (98%), Positives = 206/208 (99%)
Query: 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 60
MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR
Sbjct: 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 60
Query: 61 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 120
T+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITNVNSFQQTTKWIDDVRTERGSDVI
Sbjct: 61 TIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 120
Query: 121 IMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMEST 180
IMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMEST
Sbjct: 121 IMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMEST 180
Query: 181 QDRSREDMIDIKLEKPQEQPVSEGGCSC 208
QDRSREDMIDIKLEKPQEQPVSEGGCSC
Sbjct: 181 QDRSREDMIDIKLEKPQEQPVSEGGCSC 208
>gi|96975097 RAB6B, member RAS oncogene family [Homo sapiens]
Length = 208
Score = 384 bits (986), Expect = e-107
Identities = 189/208 (90%), Positives = 202/208 (97%)
Query: 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 60
MS GGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 60
Query: 61 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 120
TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN+NSFQQT+KWIDDVRTERGSDVI
Sbjct: 61 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVI 120
Query: 121 IMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMEST 180
IMLVGNKTDLADKRQ++IEEGE++AKEL+VMFIETSAK GYNVKQLFRRVA+ALPGME+
Sbjct: 121 IMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENV 180
Query: 181 QDRSREDMIDIKLEKPQEQPVSEGGCSC 208
Q++S+E MIDIKL+KPQE P SEGGCSC
Sbjct: 181 QEKSKEGMIDIKLDKPQEPPASEGGCSC 208
>gi|116875763 RAB6C, member RAS oncogene family [Homo sapiens]
Length = 254
Score = 369 bits (948), Expect = e-103
Identities = 187/208 (89%), Positives = 191/208 (91%)
Query: 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 60
MS GGDFGNPLRKFKLVFLGEQSV KTSLITRF YDSFDNTYQA IGIDFLSKTMYLED
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDG 60
Query: 61 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 120
T+ L+LWDTAGQER RSLIP YIRDS AVVVYDITNVNSFQQTTKWIDDVRTERGSDVI
Sbjct: 61 TIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 120
Query: 121 IMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMEST 180
I LVGN+TDLADKRQVS+EEGERKAK LNV FIET AKAGYNVKQLFRRVAAALPGMEST
Sbjct: 121 ITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKAGYNVKQLFRRVAAALPGMEST 180
Query: 181 QDRSREDMIDIKLEKPQEQPVSEGGCSC 208
QD SREDM DIKLEKPQEQ VSEGGCSC
Sbjct: 181 QDGSREDMSDIKLEKPQEQTVSEGGCSC 208
>gi|117938299 RAB6C-like [Homo sapiens]
Length = 254
Score = 368 bits (945), Expect = e-102
Identities = 188/208 (90%), Positives = 190/208 (91%)
Query: 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 60
MS GGDFGNPLRKFKLVFLGEQSV KTSLITRF YDSFDNTYQA IGIDFLSKTMYLED
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDG 60
Query: 61 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 120
T+ L+LWDTAGQER RSLIP YIRDS AVVVYDITNVNSFQQTTKWIDDVRTE GSDVI
Sbjct: 61 TIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTEGGSDVI 120
Query: 121 IMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMEST 180
I LVGNKTDLADKRQVSIEEGERKAK LNV FIET AKAGYNVKQLFRRVAAALPGMEST
Sbjct: 121 ITLVGNKTDLADKRQVSIEEGERKAKGLNVTFIETRAKAGYNVKQLFRRVAAALPGMEST 180
Query: 181 QDRSREDMIDIKLEKPQEQPVSEGGCSC 208
QD SREDM DIKLEKPQEQ VSEGGCSC
Sbjct: 181 QDGSREDMSDIKLEKPQEQTVSEGGCSC 208
>gi|74096429 RAB41, member RAS oncogene family [Homo sapiens]
Length = 222
Score = 257 bits (657), Expect = 4e-69
Identities = 130/188 (69%), Positives = 157/188 (83%), Gaps = 1/188 (0%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 70
L K KL+FLGEQSVGKTS+I+RFMY+SF QAT+GIDFLSKTMYLED+ V+LQLWDTA
Sbjct: 29 LCKSKLLFLGEQSVGKTSIISRFMYNSFGCACQATVGIDFLSKTMYLEDQIVQLQLWDTA 88
Query: 71 GQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130
GQERF SLIPSYIRDST+AVVVYDITN+NSF++T KW++ VR ERG DV+IML+GNK DL
Sbjct: 89 GQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKWVEHVRAERGDDVVIMLLGNKIDL 148
Query: 131 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMID 190
+KRQV+ E+GE K++ LNVMFIETSAK GYNVK+LFRRVA+AL T +E ++
Sbjct: 149 DNKRQVTAEQGEEKSRNLNVMFIETSAKTGYNVKKLFRRVASALLSTR-TSPPPKEGTVE 207
Query: 191 IKLEKPQE 198
I+LE +E
Sbjct: 208 IELESFEE 215
>gi|41393614 RAB5C, member RAS oncogene family isoform a [Homo
sapiens]
Length = 216
Score = 164 bits (416), Expect = 4e-41
Identities = 82/202 (40%), Positives = 126/202 (62%), Gaps = 7/202 (3%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++TIG FL++T+ L+D TV+ ++W
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75
Query: 68 DTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 127
DTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I L GNK
Sbjct: 76 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNK 135
Query: 128 TDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGME---STQDRS 184
DLA KR V +E + A + +++F+ETSAK NV ++F +A LP E +T
Sbjct: 136 ADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPG 195
Query: 185 REDMIDIKLEKPQEQPVSEGGC 206
R +D++ + P S C
Sbjct: 196 RNRGVDLQ----ENNPASRSQC 213
>gi|41393545 RAB5C, member RAS oncogene family isoform b [Homo
sapiens]
Length = 216
Score = 164 bits (416), Expect = 4e-41
Identities = 82/202 (40%), Positives = 126/202 (62%), Gaps = 7/202 (3%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++TIG FL++T+ L+D TV+ ++W
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75
Query: 68 DTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 127
DTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I L GNK
Sbjct: 76 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNK 135
Query: 128 TDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGME---STQDRS 184
DLA KR V +E + A + +++F+ETSAK NV ++F +A LP E +T
Sbjct: 136 ADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPG 195
Query: 185 REDMIDIKLEKPQEQPVSEGGC 206
R +D++ + P S C
Sbjct: 196 RNRGVDLQ----ENNPASRSQC 213
>gi|19923262 RAB5A, member RAS oncogene family [Homo sapiens]
Length = 215
Score = 164 bits (415), Expect = 5e-41
Identities = 78/175 (44%), Positives = 117/175 (66%)
Query: 4 GGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVR 63
G + GN + +FKLV LGE +VGK+SL+ RF+ F ++TIG FL++T+ L+D TV+
Sbjct: 11 GPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVK 70
Query: 64 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 123
++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I L
Sbjct: 71 FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIAL 130
Query: 124 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGME 178
GNK DLA+KR V +E + A + +++F+ETSAK NV ++F +A LP E
Sbjct: 131 SGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185
>gi|4506371 RAB5B, member RAS oncogene family [Homo sapiens]
Length = 215
Score = 157 bits (398), Expect = 5e-39
Identities = 75/166 (45%), Positives = 110/166 (66%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 72
+FKLV LGE +VGK+SL+ RF+ F ++TIG FL++++ L+D TV+ ++WDTAGQ
Sbjct: 20 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQ 79
Query: 73 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132
ER+ SL P Y R + A+VVYDITN +F + W+ +++ + ++I L GNK DLA+
Sbjct: 80 ERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLAN 139
Query: 133 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGME 178
KR V EE + A + +++F+ETSAK NV LF +A LP E
Sbjct: 140 KRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSE 185
>gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 153 bits (386), Expect = 1e-37
Identities = 74/158 (46%), Positives = 108/158 (68%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 73
FKL+ +G+ VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQE
Sbjct: 9 FKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 68
Query: 74 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
RFR++ +Y R + ++VYDITN SF WI ++ SDV M++GNK D+ DK
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDK 128
Query: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 171
RQVS E GE+ A + + F+ETSAK+ NV++ F +A
Sbjct: 129 RQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLA 166
>gi|16933567 mel transforming oncogene [Homo sapiens]
Length = 207
Score = 152 bits (383), Expect = 3e-37
Identities = 80/191 (41%), Positives = 119/191 (62%), Gaps = 11/191 (5%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 73
FKL+ +G+ VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQE
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 74 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
RFR++ +Y R + ++VYDITN SF WI ++ +DV M++GNK D+ DK
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128
Query: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKL 193
RQVS E GE+ A + + F+ETSAKA NV+ F +A R + +D KL
Sbjct: 129 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA-----------RDIKAKMDKKL 177
Query: 194 EKPQEQPVSEG 204
E Q ++G
Sbjct: 178 EGNSPQGSNQG 188
>gi|50234889 RAB43 protein [Homo sapiens]
Length = 212
Score = 152 bits (383), Expect = 3e-37
Identities = 82/197 (41%), Positives = 123/197 (62%), Gaps = 5/197 (2%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 73
FKLV +G+ SVGKT ++ RF +F +TIG+DF KT+ ++ + V+LQ+WDTAGQE
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 78
Query: 74 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
RFR++ SY R + A++ YDIT +SF WI+DVR GS+++ +L+GNK+DL++
Sbjct: 79 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 138
Query: 134 RQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIK 192
R+VS+ E + A+ +++ IETSAK NV++ F RVA L S + I+
Sbjct: 139 REVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPLFSEKSPDHIQ 198
Query: 193 LEKPQEQPVSEG-GCSC 208
L + + EG GC C
Sbjct: 199 L---NSKDIGEGWGCGC 212
>gi|33589861 RAB31, member RAS oncogene family [Homo sapiens]
Length = 195
Score = 147 bits (370), Expect = 8e-36
Identities = 69/189 (36%), Positives = 118/189 (62%), Gaps = 3/189 (1%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 70
+R+ K+ LG+ VGK+S++ RF+ D FD+ TIG F++KT+ + + +WDTA
Sbjct: 4 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTA 63
Query: 71 GQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130
GQERF SL P Y R S AV+VYDIT +SF KW+ +++ ++++ + GNK DL
Sbjct: 64 GQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDL 123
Query: 131 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMID 190
+D R+V +++ + A+ + + +ETSAK N+++LF+ ++ +P ++ ++ +
Sbjct: 124 SDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHENGNNG---T 180
Query: 191 IKLEKPQEQ 199
IK+EKP Q
Sbjct: 181 IKVEKPTMQ 189
>gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 146 bits (368), Expect = 1e-35
Identities = 78/200 (39%), Positives = 112/200 (56%), Gaps = 8/200 (4%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 73
FKL+ +G SVGKTS + R+ DSF + +T+GIDF KT+Y D+ ++LQ+WDTAGQE
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 74 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
R+R++ +Y R + +++YDI N SF W ++T + ++LVGNK DL D+
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142
Query: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL-----PGMESTQDRSREDM 188
R V E+G R A +L F E SAK NVKQ+F R+ + +E +
Sbjct: 143 RVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNESLEPSSSSGSNGK 202
Query: 189 IDIKLEKPQEQPVSEGGCSC 208
+ P QP S CSC
Sbjct: 203 GPAVGDAPAPQPSS---CSC 219
>gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens]
Length = 227
Score = 145 bits (365), Expect = 3e-35
Identities = 67/157 (42%), Positives = 102/157 (64%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 73
FKL+ +G SVGKTS + R+ DSF + + +T+GIDF KT++ ++ ++LQ+WDTAGQE
Sbjct: 31 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQE 90
Query: 74 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
R+R++ +Y R + +++YDITN SF W ++T + ++LVGNK D+ D+
Sbjct: 91 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 150
Query: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170
R +S E G+ ++L F ETSAK NVKQ F R+
Sbjct: 151 RVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERL 187
>gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens]
Length = 200
Score = 145 bits (365), Expect = 3e-35
Identities = 71/158 (44%), Positives = 106/158 (67%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 73
FKL+ +G+ VGKT ++ RF D+F+ T+ +TIGIDF KT+ L+ + ++LQ+WDTAGQE
Sbjct: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQE 69
Query: 74 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
RF ++ SY R + ++VYDITN SF+ +KW+ ++ DV ML+GNK D+ DK
Sbjct: 70 RFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDK 129
Query: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 171
R V +G + A+E + F ETSAKA N+++ F +A
Sbjct: 130 RVVPKGKGGQIAREHGIRFFETSAKANINIEKAFLTLA 167
>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 145 bits (365), Expect = 3e-35
Identities = 68/158 (43%), Positives = 106/158 (67%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 73
FKL+ +G+ VGKT LI RF D+F+NTY +TIGIDF +T+ +E + ++LQ+WDTAGQE
Sbjct: 9 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQE 68
Query: 74 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
RF+++ +Y R + ++VYDIT+ SF+ W+ ++ + V +L+GNK D+ K
Sbjct: 69 RFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAK 128
Query: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 171
R+V E+ ++ A+E + F ETSAK+ NV + F +A
Sbjct: 129 RKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLA 166
>gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens]
Length = 220
Score = 144 bits (363), Expect = 5e-35
Identities = 69/157 (43%), Positives = 99/157 (63%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 73
FK++ +G SVGKTS + R+ DSF + +T+GIDF KT+Y D+ ++LQ+WDTAGQE
Sbjct: 23 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 82
Query: 74 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
R+R++ +Y R + +++YDITN SF W ++T + ++LVGNK D+ D+
Sbjct: 83 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 142
Query: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170
R VS E G + A L F E SAK NVKQ F R+
Sbjct: 143 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 179
>gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens]
Length = 212
Score = 143 bits (360), Expect = 1e-34
Identities = 70/181 (38%), Positives = 114/181 (62%), Gaps = 6/181 (3%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 73
FK + +G+ VGK+ L+ +F F + TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 66
Query: 74 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
FRS+ SY R + A++VYDIT ++F T W++D R S+++IML+GNK+DL +
Sbjct: 67 SFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESR 126
Query: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKL 193
R+V EEGE A+E ++F+ETSAK NV++ F A + ++ +E + DI
Sbjct: 127 REVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTA------KEIYEKIQEGVFDINN 180
Query: 194 E 194
E
Sbjct: 181 E 181
>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 142 bits (359), Expect = 2e-34
Identities = 71/193 (36%), Positives = 115/193 (59%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 73
FKL+ +G+ VGK+ L+ RF D++ +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 74 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
RFR++ SY R + +VVYD+T+ S+ +W+ ++ +V +LVGNK+DL K
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 128
Query: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKL 193
+ V + A L + F+ETSAK NV+Q F +AA + S + ++K+
Sbjct: 129 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKI 188
Query: 194 EKPQEQPVSEGGC 206
+ +P G C
Sbjct: 189 DSTPVKPAGGGCC 201
>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
sapiens]
Length = 205
Score = 142 bits (358), Expect = 2e-34
Identities = 75/198 (37%), Positives = 116/198 (58%), Gaps = 8/198 (4%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 73
FKL+ +G+ VGK+ L+ RF D++ +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQE
Sbjct: 12 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 71
Query: 74 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
RFR++ SY R + +VVYD+T+ SF +W+ ++ +V +LVGNK DL K
Sbjct: 72 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 131
Query: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP---GMESTQDRSREDMID 190
+ V + A L + F+ETSAK NV+Q F +AA + G +T + + +
Sbjct: 132 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVK 191
Query: 191 IKLEKPQEQPVSEGGCSC 208
I Q PV + G C
Sbjct: 192 I-----QSTPVKQSGGGC 204
>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
family [Homo sapiens]
Length = 327
Score = 142 bits (358), Expect = 2e-34
Identities = 67/158 (42%), Positives = 104/158 (65%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 73
FKL+ +G+ VGKT LI RF D+F+NTY +TIGIDF +T+ +E + ++LQ+WDTAGQE
Sbjct: 133 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQE 192
Query: 74 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
RF+++ +Y R + ++ YDIT+ SF+ W+ + + V +L+GNK D+ K
Sbjct: 193 RFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNKCDMEAK 252
Query: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 171
R+V E+ ++ A+E + F ETSAK+ NV + F +A
Sbjct: 253 RKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLA 290
>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 142 bits (358), Expect = 2e-34
Identities = 67/158 (42%), Positives = 104/158 (65%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 73
FKL+ +G+ VGKT LI RF D+F+NTY +TIGIDF +T+ +E + ++LQ+WDTAGQE
Sbjct: 133 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQE 192
Query: 74 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
RF+++ +Y R + ++ YDIT+ SF+ W+ + + V +L+GNK D+ K
Sbjct: 193 RFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNKCDMEAK 252
Query: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 171
R+V E+ ++ A+E + F ETSAK+ NV + F +A
Sbjct: 253 RKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLA 290
>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 142 bits (358), Expect = 2e-34
Identities = 67/158 (42%), Positives = 104/158 (65%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 73
FKL+ +G+ VGKT LI RF D+F+NTY +TIGIDF +T+ +E + ++LQ+WDTAGQE
Sbjct: 133 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQE 192
Query: 74 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
RF+++ +Y R + ++ YDIT+ SF+ W+ + + V +L+GNK D+ K
Sbjct: 193 RFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNKCDMEAK 252
Query: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 171
R+V E+ ++ A+E + F ETSAK+ NV + F +A
Sbjct: 253 RKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLA 290
>gi|10190714 RAS-related protein RAB-22A [Homo sapiens]
Length = 194
Score = 142 bits (358), Expect = 2e-34
Identities = 64/169 (37%), Positives = 104/169 (61%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 70
LR+ K+ LG+ VGK+S++ RF+ DSFD TIG F++KT+ ++ + +WDTA
Sbjct: 3 LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62
Query: 71 GQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130
GQERFR+L P Y R S A++VYDIT +F W+ ++R ++++ + GNK DL
Sbjct: 63 GQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDL 122
Query: 131 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
D R+V + + A ++ +F+ETSAK N+ +LF ++ +P ++
Sbjct: 123 IDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPSTDA 171
>gi|21361884 RAB2B protein isoform 1 [Homo sapiens]
Length = 216
Score = 141 bits (356), Expect = 3e-34
Identities = 66/158 (41%), Positives = 103/158 (65%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 73
FK + +G+ VGK+ L+ +F F + TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 66
Query: 74 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
FRS+ SY R + A++VYDIT +F T W++D R S+++IML+GNK+DL +
Sbjct: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 126
Query: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 171
R V EEGE A+E ++F+ETSAK NV++ F A
Sbjct: 127 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA 164
>gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo
sapiens]
Length = 223
Score = 141 bits (356), Expect = 3e-34
Identities = 70/161 (43%), Positives = 105/161 (65%), Gaps = 1/161 (0%)
Query: 15 KLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 73
K++ LG+ VGKT + +F +F T+ AT+GIDF +K + ++ V+LQ+WDTAGQE
Sbjct: 31 KVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQE 90
Query: 74 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
RFRS+ +Y RD+ +++YDITN +SF W+ ++ DV+IML+GNK D++ +
Sbjct: 91 RFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSE 150
Query: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 174
R + E+GE A+E V F+ETSAK G NV+ F +A L
Sbjct: 151 RVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKEL 191
>gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo
sapiens]
Length = 216
Score = 141 bits (356), Expect = 3e-34
Identities = 72/172 (41%), Positives = 109/172 (63%), Gaps = 2/172 (1%)
Query: 4 GGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTV 62
G DF + + K + +G+ VGKTSL+ +F F ++ AT+GI F +K + ++ V
Sbjct: 14 GPDFNDHVLH-KTILVGDSGVGKTSLLVQFDQGKFIPGSFSATVGIGFTNKVVTVDGVRV 72
Query: 63 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIM 122
+LQ+WDTAGQERFRS+ +Y RD+ +++YDITN +SF W+ ++ DV+IM
Sbjct: 73 KLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIM 132
Query: 123 LVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 174
L+GNK D++ +R + E+GE A+E V F+ETSAK G NV+ F +A L
Sbjct: 133 LLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKEL 184
>gi|7661922 RAB21, member RAS oncogene family [Homo sapiens]
Length = 225
Score = 140 bits (354), Expect = 6e-34
Identities = 78/203 (38%), Positives = 118/203 (58%), Gaps = 11/203 (5%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 73
FK+V LGE VGKTSL+ R+ + F++ + T+ FL+K + + + V L +WDTAGQE
Sbjct: 20 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 79
Query: 74 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
RF +L P Y RDS A++VYDIT+ +SFQ+ W+ ++R G+++ + +VGNK DL +
Sbjct: 80 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 139
Query: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF----------RRVAAALPGMESTQDR 183
R VSI+E E A+ + TSAK +++LF +V G S+Q
Sbjct: 140 RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQPG 199
Query: 184 SREDMIDIKLEKPQEQPVSEGGC 206
+ + I ++PQ Q S GGC
Sbjct: 200 TARRGVQIIDDEPQAQ-TSGGGC 221
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,656,785
Number of Sequences: 37866
Number of extensions: 235300
Number of successful extensions: 1070
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 700
Number of HSP's gapped (non-prelim): 247
length of query: 208
length of database: 18,247,518
effective HSP length: 98
effective length of query: 110
effective length of database: 14,536,650
effective search space: 1599031500
effective search space used: 1599031500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.