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Search of human proteins with 38569495
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38569495 ELL associated factor 1 [Homo sapiens]
(268 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38569495 ELL associated factor 1 [Homo sapiens] 548 e-156
gi|21361796 ELL associated factor 2 [Homo sapiens] 259 1e-69
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 56 4e-08
gi|90903231 huntingtin [Homo sapiens] 51 9e-07
gi|13430848 nuclear receptor subfamily 1, group D, member 1 [Hom... 49 4e-06
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 49 4e-06
gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax ... 49 6e-06
gi|18079216 CASK interacting protein 1 [Homo sapiens] 47 1e-05
gi|157743257 POU domain, class 6, transcription factor 2 [Homo s... 47 1e-05
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens] 47 2e-05
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 47 2e-05
gi|55741473 HECT, C2 and WW domain containing E3 ubiquitin prote... 47 2e-05
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 46 4e-05
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 46 4e-05
gi|169163027 PREDICTED: similar to Putative acrosin-like proteas... 46 4e-05
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 46 4e-05
gi|56549696 E1A binding protein p400 [Homo sapiens] 46 4e-05
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 46 4e-05
gi|68348716 AF4/FMR2 family, member 3 isoform 2 [Homo sapiens] 45 5e-05
gi|68348714 AF4/FMR2 family, member 3 isoform 1 [Homo sapiens] 45 5e-05
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 45 7e-05
gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 45 7e-05
gi|210032580 SET domain containing 1B [Homo sapiens] 45 7e-05
gi|55741677 SET domain containing 1A [Homo sapiens] 45 9e-05
gi|91208420 bassoon protein [Homo sapiens] 45 9e-05
gi|148613878 acrosin precursor [Homo sapiens] 45 9e-05
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 44 1e-04
gi|7669528 neuregulin 2 isoform 2 [Homo sapiens] 44 1e-04
gi|7669532 neuregulin 2 isoform 4 [Homo sapiens] 44 1e-04
gi|7669530 neuregulin 2 isoform 3 [Homo sapiens] 44 1e-04
>gi|38569495 ELL associated factor 1 [Homo sapiens]
Length = 268
Score = 548 bits (1411), Expect = e-156
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 1 MNGTANPLLDREEHCLRLGESFEKRPRASFHTIRYDFKPASIDTSCEGELQVGKGDEVTI 60
MNGTANPLLDREEHCLRLGESFEKRPRASFHTIRYDFKPASIDTSCEGELQVGKGDEVTI
Sbjct: 1 MNGTANPLLDREEHCLRLGESFEKRPRASFHTIRYDFKPASIDTSCEGELQVGKGDEVTI 60
Query: 61 TLPHIPGSTPPMTVFKGNKRPYQKDCVLIINHDTGEYVLEKLSSSIQVKKTRAEGSSKIQ 120
TLPHIPGSTPPMTVFKGNKRPYQKDCVLIINHDTGEYVLEKLSSSIQVKKTRAEGSSKIQ
Sbjct: 61 TLPHIPGSTPPMTVFKGNKRPYQKDCVLIINHDTGEYVLEKLSSSIQVKKTRAEGSSKIQ 120
Query: 121 ARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAE 180
ARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAE
Sbjct: 121 ARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAE 180
Query: 181 VDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGT 240
VDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGT
Sbjct: 181 VDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGT 240
Query: 241 SRPQGSNQLMNTLRNDLQLSESGSDSDD 268
SRPQGSNQLMNTLRNDLQLSESGSDSDD
Sbjct: 241 SRPQGSNQLMNTLRNDLQLSESGSDSDD 268
>gi|21361796 ELL associated factor 2 [Homo sapiens]
Length = 260
Score = 259 bits (663), Expect = 1e-69
Identities = 148/267 (55%), Positives = 177/267 (66%), Gaps = 23/267 (8%)
Query: 9 LDREEHCLRLGESFEKRPRASFHTIRYDFKPASIDTSCEGELQVGKGDEVTITLPHIPGS 68
LDR E L+LGESFEK+PR +FHT+RYDFKPASIDTS EG L+VG+G++VTITLP+I GS
Sbjct: 10 LDRRERVLKLGESFEKQPRCAFHTVRYDFKPASIDTSSEGYLEVGEGEQVTITLPNIEGS 69
Query: 69 TPPMTVFKGNKRPYQKDCVLIINHDTGEYVLEKLSSSIQVKKTRAEGSSKIQARMEQQPT 128
TPP+TVFKG+K+PY K+C+LIINHDTGE LEKLSS+I VKKTR EGSSKIQ R EQQ
Sbjct: 70 TPPVTVFKGSKKPYLKECILIINHDTGECRLEKLSSNITVKKTRVEGSSKIQYRKEQQQQ 129
Query: 129 RPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAEVDIIEQMS 188
+ +++ P K SP +D SP +DDI+REL+AE +++QMS
Sbjct: 130 QMWNSARTPNL---------------VKHSPSEDKMSPASPIDDIERELKAEASLMDQMS 174
Query: 189 SSSGSSSSDSESSSGSDDDSSSSGGE-------DNGPASPPQPSHQQPYNSRPAVANGTS 241
S SS S S SSS S+D SS S E D G P+ Q Y A+
Sbjct: 175 SCDSSSDSKSSSSSSSEDSSSDSEDEDCKSSTSDTGNCVSGHPTMTQ-YRIPDIDASHNR 233
Query: 242 RPQGSNQLMNTLRNDLQLSESGSDSDD 268
S LMNTLRNDLQLSESGSDSDD
Sbjct: 234 FRDNSGLLMNTLRNDLQLSESGSDSDD 260
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 55.8 bits (133), Expect = 4e-08
Identities = 48/162 (29%), Positives = 66/162 (40%), Gaps = 14/162 (8%)
Query: 103 SSSIQVKKTRAEGSSKIQARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKD 162
SSS + + GSS + P +P + P P P P A +++
Sbjct: 2545 SSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEA------------VRE 2592
Query: 163 NPSPEPQLDDIKRELRAEVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPP 222
PEP KR + SSSS SSSS S SSS S SSSS + SP
Sbjct: 2593 GRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPA 2652
Query: 223 QPSHQQ-PYNSRP-AVANGTSRPQGSNQLMNTLRNDLQLSES 262
+P Q P + P G R + + +++LR+ LS S
Sbjct: 2653 KPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYS 2694
Score = 40.0 bits (92), Expect = 0.002
Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 11/136 (8%)
Query: 103 SSSIQVKKTRAEGSSKIQARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKD 162
SSS + + SS + + P ++P P P P +P KPP G + S
Sbjct: 2621 SSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKP-ASPKKPPPGERRSR--- 2676
Query: 163 NPSPEPQLDDIKRELRAEVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPA--- 219
SP +D ++ +E+ S S D +SSS G+ P+
Sbjct: 2677 --SPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSHKR 2734
Query: 220 --SPPQPSHQQPYNSR 233
P P + +SR
Sbjct: 2735 RRETPSPRPMRHRSSR 2750
Score = 39.7 bits (91), Expect = 0.003
Identities = 49/198 (24%), Positives = 71/198 (35%), Gaps = 24/198 (12%)
Query: 94 TGEYVLEKLSSSIQVKKTRAEGSSKIQARMEQQPTRPPQTSQPPP--------------P 139
+G K S +++R+ GSS+ +A+ P R +S PPP
Sbjct: 780 SGSSPCPKQKSQTPPRRSRS-GSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSS 838
Query: 140 PPPMPFRAPTKPPVGPKTSPLKDNPSPEPQL-----DDIKRELRAEVDIIEQMSSSSGSS 194
P ++ T P G TSP + S PQ EL++ S SS
Sbjct: 839 SPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSCFESSPDPELKSRTPSRHSCSGSSPPR 898
Query: 195 SSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGTSRPQGSNQLMNTLR 254
S S SSS + SP Q SH + P+ + P+ S +
Sbjct: 899 VKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTSRTTPRRSRSVSPCSN 958
Query: 255 NDLQL----SESGSDSDD 268
+ +L S SGS S D
Sbjct: 959 VESRLLPRYSHSGSSSPD 976
Score = 39.3 bits (90), Expect = 0.004
Identities = 44/152 (28%), Positives = 60/152 (39%), Gaps = 19/152 (12%)
Query: 120 QARMEQQPTRPPQ---TSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNP-SPEPQ-LDDIK 174
+AR P+ P Q TS+ P P +AP++ + P +D P SP P D
Sbjct: 2404 RARSRTPPSAPSQSRMTSERAPSPSSRMGQAPSQSLL----PPAQDQPRSPVPSAFSDQS 2459
Query: 175 RELRAEVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRP 234
R L I Q + +GS S SSG+ ++SS G+ NG S P P P
Sbjct: 2460 RCL------IAQTTPVAGSQSL----SSGAVATTTSSAGDHNGMLSVPAPGVPHSDVGEP 2509
Query: 235 AVANGTSRPQGSNQLMNTLRNDLQLSESGSDS 266
+ G +P L S S S S
Sbjct: 2510 PASTGAQQPSALAALQPAKERRSSSSSSSSSS 2541
Score = 38.5 bits (88), Expect = 0.006
Identities = 30/86 (34%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 139 PPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAEVDIIEQMSSSSGSSSSDS 198
P P +P +PP S PS L K + SSSS SSSS S
Sbjct: 2497 PAPGVPHSDVGEPPA----STGAQQPSALAALQPAKERRSSS------SSSSSSSSSSSS 2546
Query: 199 ESSSGSDDDSSSSGGEDNGPASPPQP 224
SSS S S SS + G + P QP
Sbjct: 2547 SSSSSSSSSSGSSSSDSEGSSLPVQP 2572
Score = 37.0 bits (84), Expect = 0.018
Identities = 38/142 (26%), Positives = 53/142 (37%), Gaps = 9/142 (6%)
Query: 103 SSSIQVKKTRAEGSSKIQARMEQQPTRPP----QTSQPPPPPPPMPFRAPTK--PPVGPK 156
S K+ + K + + E+ TRP ++S P PP P P A P
Sbjct: 323 SPETATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLA 382
Query: 157 TSPLKDNPSPEPQLDDIKRELRAEVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDN 216
T+PL P P R+ R+ E++ SS S SS +SS E
Sbjct: 383 TTPLSQEPVNPPSEASPTRD-RSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESP 441
Query: 217 GPASPPQPSHQQPYNSRPAVAN 238
PA P P + +S P N
Sbjct: 442 KPA--PAPGSHREISSSPTSKN 461
Score = 31.2 bits (69), Expect = 0.99
Identities = 31/122 (25%), Positives = 43/122 (35%), Gaps = 9/122 (7%)
Query: 126 QPTRPPQTSQPPPPPP----PMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAEV 181
QP SQ P PP P R+P K P S ++ P PQ + R +
Sbjct: 379 QPLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSS- 437
Query: 182 DIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVA-NGT 240
+ + + S E SS + S G + PS + + PA A G
Sbjct: 438 ---PESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGR 494
Query: 241 SR 242
SR
Sbjct: 495 SR 496
Score = 30.0 bits (66), Expect = 2.2
Identities = 33/136 (24%), Positives = 46/136 (33%), Gaps = 30/136 (22%)
Query: 123 MEQQPTRPPQTSQP-----PPPPPPM-----------PFRAPTKPPVGPKTSPLKDNPSP 166
+ Q+P PP + P PP P P PTK +SP P+P
Sbjct: 386 LSQEPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAP 445
Query: 167 EPQLDDIKRELRAEVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSH 226
P RE+ SSS +S + S + D S + G + P +
Sbjct: 446 AP---GSHREI-----------SSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAK 491
Query: 227 QQPYNSRPAVANGTSR 242
+ SR G SR
Sbjct: 492 RGRSRSRTPTKRGHSR 507
Score = 28.5 bits (62), Expect = 6.4
Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Query: 154 GPKTSPLKDNPSPEPQLDDIKRELRAEVDIIEQMSSSSGSSSSDSESS--------SGSD 205
GP + L+ +PS + + + + ++ +G SS+ S SS + S
Sbjct: 1357 GPFLNQLETDPSLDMKEQSTRSSGHSSSELSPDAVEKAGMSSNQSISSPVLDAVPRTPSR 1416
Query: 206 DDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGTSRP 243
+ SSS+ + P PS + S P + +G+ P
Sbjct: 1417 ERSSSASSPEMKDGLPRTPSRRSRSGSSPGLRDGSGTP 1454
>gi|90903231 huntingtin [Homo sapiens]
Length = 3144
Score = 51.2 bits (121), Expect = 9e-07
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 99 LEKLSSSIQVKKTRAEGSSKIQARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTS 158
LEKL + + K+ + + Q + +QQ + Q QPPPPPPP P P P P+
Sbjct: 4 LEKLMKAFESLKSFQQQQQQQQQQQQQQQQQQQQQQQPPPPPPPPP--PPQLPQPPPQAQ 61
Query: 159 PLKDNPSPEP 168
PL P P P
Sbjct: 62 PLLPQPQPPP 71
Score = 43.1 bits (100), Expect = 3e-04
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 107 QVKKTRAEGSSKIQARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSP 166
Q ++ + + + Q + +QQP PP PPPPPP +P P P+ P+ P P P
Sbjct: 21 QQQQQQQQQQQQQQQQQQQQPPPPP----PPPPPPQLPQPPPQAQPLLPQPQPPPPPPPP 76
Query: 167 EP 168
P
Sbjct: 77 PP 78
Score = 35.4 bits (80), Expect = 0.053
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 100 EKLSSSIQVKKTRAEGSSKIQARMEQQ------PTRPPQTSQPPPPPPPMPFRAPTKPPV 153
E L S Q ++ + + + Q + +QQ P PP P PPP P +PP
Sbjct: 12 ESLKSFQQQQQQQQQQQQQQQQQQQQQQQPPPPPPPPPPPQLPQPPPQAQPLLPQPQPPP 71
Query: 154 GPKTSPLKDNPSPEPQLDDIKRELRA 179
P P + EP L K+EL A
Sbjct: 72 PPPPPPPGPAVAEEP-LHRPKKELSA 96
>gi|13430848 nuclear receptor subfamily 1, group D, member 1 [Homo
sapiens]
Length = 614
Score = 49.3 bits (116), Expect = 4e-06
Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 15/158 (9%)
Query: 98 VLEKLSSSIQVKKTRAEGSSKIQARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKT 157
+L ++ S++ + + ++ Q PT P PPP P P P ++ P +
Sbjct: 216 MLAEMQSAMNLANNQLSSQCPLETSPTQHPTPGPMGPSPPPAPVPSPLVGFSQFP--QQL 273
Query: 158 SPLKDNPSPEPQLDD-IKRELRAEVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDN 216
+P + +PSPEP ++D I + RA +I GSS + ++ S +++
Sbjct: 274 TPPR-SPSPEPTVEDVISQVARAHREIFTYAHDKLGSSPGNFNANHASGSPPATTPHRWE 332
Query: 217 GPASPPQPSHQQPYNSRPAVANGTSRPQGSNQLMNTLR 254
PP P+ N T Q N+ +N LR
Sbjct: 333 NQGCPPAPND-----------NNTLAAQRHNEALNGLR 359
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 49.3 bits (116), Expect = 4e-06
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Query: 122 RMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAEV 181
R++ +P PP P PPP +P P PP P S P+PE + ++ + A
Sbjct: 503 RLKAEPAAPPAAPSTPAPPPAVPKELPA-PPAPPPASA----PTPETEPEEPAQAPPA-- 555
Query: 182 DIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQP 229
Q + + G +++ + S G S+SSG + P P PS + P
Sbjct: 556 ----QSTPTPGVAAAPTLVSGGGSTSSTSSGSFEASPVEPQLPSKEGP 599
Score = 42.7 bits (99), Expect = 3e-04
Identities = 37/120 (30%), Positives = 47/120 (39%), Gaps = 12/120 (10%)
Query: 127 PTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAEVDIIEQ 186
P+R P+ + P PPM P P K LK+ + + DD EVD E+
Sbjct: 279 PSRFPRVAGPRGSGPPMRLVEPVGRPSILKEDNLKEFDQLDQENDDGWAGAHEEVDYTEK 338
Query: 187 M--SSSSGSSSSDSESSSGSDDDSSSSGGE---------DNGPAS-PPQPSHQQPYNSRP 234
+ S SD E + G D S+SG E N P S PP P SRP
Sbjct: 339 LKFSDEEDGRDSDEEGAEGHRDSQSASGEERPPEADGKKGNSPNSEPPTPKTAWAETSRP 398
Score = 35.4 bits (80), Expect = 0.053
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 122 RMEQQPTRP-PQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQL 170
++E+ P +P Q + P PP P P + GPK +P N SP P+L
Sbjct: 960 KVEELPPKPLEQGDETPKPPKPDPLKITKGKLGGPKETPPNGNLSPAPRL 1009
Score = 33.1 bits (74), Expect = 0.26
Identities = 31/119 (26%), Positives = 45/119 (37%), Gaps = 17/119 (14%)
Query: 134 SQPPPPPPPMPFRA-----PTKPPVGPKTS--PLKD---NPSPEPQLDDIKRELRAEVDI 183
S+ PP PPP P+ A P GP S PL++ P P P D EV
Sbjct: 823 SETPPVPPPPPYLASYPGFPENGAPGPPISRFPLEEPGPRPLPWPPGSD-------EVAK 875
Query: 184 IEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGTSR 242
I+ ++ +G + + G +G PP P + +R G+SR
Sbjct: 876 IQTPPPKKEPPKEETAQLTGPEAGRKPARGVGSGGQGPPPPRRESRTETRWGPRPGSSR 934
Score = 32.0 bits (71), Expect = 0.58
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 125 QQPTRPPQTSQP---PPPP------PPMPFRAPTKPPVGPKTSPLK 161
++P PP+ + P PPPP PP P + P PK PLK
Sbjct: 940 EEPGAPPRRAGPIKKPPPPTKVEELPPKPLEQGDETPKPPKPDPLK 985
Score = 30.8 bits (68), Expect = 1.3
Identities = 41/157 (26%), Positives = 52/157 (33%), Gaps = 30/157 (19%)
Query: 115 GSSKIQARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGP------------------- 155
G S + ++P R P+ Q PPP P GP
Sbjct: 1552 GVSPFPPKRRERPPRKPELLQEESLPPPHSSGFLGSKPEGPGPQAESRDTGTEALTPHIW 1611
Query: 156 -----KTSPLKDNPSP-EPQLDDIKRELRAEVDIIEQMSSSSG-SSSSDSESSSGSDDDS 208
TS PS EP ++ + +V E S SG S DS+ SSG
Sbjct: 1612 NRLHTATSRKSYRPSSMEPWMEPLSP--FEDVAGTEMSQSDSGVDLSGDSQVSSGPCSQR 1669
Query: 209 SSSGGEDNGPAS--PPQPSHQQPYNSRPAVANGTSRP 243
SS G G A P +P P N+ P S P
Sbjct: 1670 SSPDGGLKGAAEGPPKRPGGSSPLNAVPCEGPPGSEP 1706
Score = 30.4 bits (67), Expect = 1.7
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 127 PTRPPQTSQPPPPP------PPMPFRAPTKPPVG---PKTSPLKDNPSPEP 168
P+R + PPP PP AP KPP G P PLK+ P P
Sbjct: 1167 PSRRGRGGGRPPPQVCPGWSPPAKSLAPKKPPTGPLPPSKEPLKEKLIPGP 1217
Score = 29.3 bits (64), Expect = 3.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 126 QPTRPPQTSQPPPPPPPMPFRAPTKPPVG----PKTSPLKDNPSPEP 168
+ +RPP+T +P PP P P P + P G P P + P +P
Sbjct: 394 ETSRPPET-EPGPPAPKPPLPPPHRGPAGNWGPPGDYPDRGGPPCKP 439
Score = 29.3 bits (64), Expect = 3.8
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 116 SSKIQARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSP 159
+S ++ ++ + P PPP PP+P P +GP P
Sbjct: 586 ASPVEPQLPSKEGPEPPEEVPPPTTPPVPKVEPKGDGIGPTRQP 629
Score = 28.9 bits (63), Expect = 4.9
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 101 KLSSSIQVKKTRAEGSSKIQARMEQQPTRPPQTSQPPPPPPPMP--------FRAPTKPP 152
K S+ + R + ++ + + Q + Q S PP P PP P AP PP
Sbjct: 638 KYQKSLPPRFQRQQQEQLLKQQQQHQWQQHQQGSAPPTPVPPSPPQPVTLGAVPAPQAPP 697
Query: 153 VGPK 156
PK
Sbjct: 698 PPPK 701
Score = 28.9 bits (63), Expect = 4.9
Identities = 43/185 (23%), Positives = 69/185 (37%), Gaps = 40/185 (21%)
Query: 112 RAEGSSKIQARMEQQPTRPPQTSQPPPPPPP---------MPFRAPTKP-PVGPKTSPLK 161
R GSS + A P P S+PP PPP +P P P P+G + S
Sbjct: 1686 RPGGSSPLNA----VPCEGPPGSEPPRRPPPAPHDGDRKELPREQPLPPGPIGTERSQRT 1741
Query: 162 D------------NPSPEPQLDDIKRELRAEVDIIEQMSSSSGSSSSDSESSSGSDD--- 206
D P P Q ++ + + + + + ++S +E+ S D
Sbjct: 1742 DRGTEPGPIRPSHRPGPPVQFGTSDKDSDLRLVVGDSLKAEKELTASVTEAIPVSRDWEL 1801
Query: 207 -DSSSSGGE------DNGPASP-PQPSHQQPYNSRPAVANGTSRPQGSNQLMNTLRNDLQ 258
S+++ E D+G P P S Q+ Y P V G++ P S + + L
Sbjct: 1802 LPSAAASAEPQSKNLDSGHCVPEPSSSGQRLY---PEVFYGSAGPSSSQISGGAMDSQLH 1858
Query: 259 LSESG 263
+ G
Sbjct: 1859 PNSGG 1863
>gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax
homolog 2 [Homo sapiens]
Length = 1210
Score = 48.5 bits (114), Expect = 6e-06
Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 35/110 (31%)
Query: 124 EQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAEVDI 183
EQ P +PP +S PP P +P PV S
Sbjct: 438 EQTPEKPPSSSAPPSAPQSLP------EPVASAHS------------------------- 466
Query: 184 IEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSR 233
SS+ S+SDS+SSS S+ +SSSS E+N P P P + P ++
Sbjct: 467 ----SSAESESTSDSDSSSDSESESSSSDSEENEPLETPAPEPEPPTTNK 512
Score = 37.0 bits (84), Expect = 0.018
Identities = 45/196 (22%), Positives = 70/196 (35%), Gaps = 45/196 (22%)
Query: 76 KGNKRPYQKDCVLIINHDTGEYVLEKLSSSIQVKKTRAEGSSKIQARMEQQPTRPPQTSQ 135
K K ++DC D + LEK ++K + SS + + +P+RP S
Sbjct: 812 KKRKGEAERDC------DNKKIRLEK-----EIKSQSSSSSSSHKESSKTKPSRPSSQSS 860
Query: 136 PPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAEVDIIEQMSSSSGSSS 195
PP P + ++ P P +KR R E D Q S SS+
Sbjct: 861 KKEMLPPPPVSSSSQKPAKPA----------------LKRS-RREADTCGQDPPKSASST 903
Query: 196 SDSESSS---------GSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGTSRPQGS 246
+ S G SSS +G + P P P++ NG S+P
Sbjct: 904 KSNHKDSSIPKQRRVEGKGSRSSSEHKGSSGDTANPFPV--------PSLPNGNSKPGKP 955
Query: 247 NQLMNTLRNDLQLSES 262
+ + DL + E+
Sbjct: 956 QVKFDKQQADLHMREA 971
Score = 35.4 bits (80), Expect = 0.053
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 121 ARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAE 180
+R+ Q P + + + PP + ++ +S L E + D +++R E
Sbjct: 771 SRIPQPPGKGSRQRKAEDKQPPAGKKHSSEKRSSDSSSKLAKKRKGEAERDCDNKKIRLE 830
Query: 181 VDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAV 236
+I Q SSSS S S++ SS S ++ P P S Q+P ++PA+
Sbjct: 831 KEIKSQSSSSSSSHKESSKTKPSR--PSSQSSKKEMLPPPPVSSSSQKP--AKPAL 882
Score = 31.2 bits (69), Expect = 0.99
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 151 PPVGPKTSPLKDNPSPEPQLDDIKRELRAEVDIIEQMSSSSGS-SSSDSESSSGSDDDSS 209
PP+ +P PS P + + + +Q +SS + S+S +SS +DD
Sbjct: 369 PPLTAIHTPSTAEPSKFPFPTKDSQHVSSVTQNQKQYDTSSKTHSNSQQGTSSMLEDDLQ 428
Query: 210 SSGGEDNGPASPPQPSHQQPYNSRPAVANGTSRPQGSNQLMNTLRNDLQLSESGSDSD 267
S ED+ P+ + P +S P S PQ + + + + SES SDSD
Sbjct: 429 LSDSEDSDSEQTPE---KPPSSSAPP-----SAPQSLPEPVASAHSSSAESESTSDSD 478
Score = 29.3 bits (64), Expect = 3.8
Identities = 31/132 (23%), Positives = 44/132 (33%), Gaps = 22/132 (16%)
Query: 134 SQPPPPPPPMPFRAPTKPPVGP-------KTSPLKDNPSPEPQL-------DDIKRELRA 179
S+ PPP +AP PP P + SP + P P+ Q +K RA
Sbjct: 557 SESKDPPPKSSSKAPRAPPEAPHPGKRSCQKSPAQQEP-PQRQTVGTKQPKKPVKASARA 615
Query: 180 EVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNG-------PASPPQPSHQQPYNS 232
Q G S + D + G PA PP ++ +S
Sbjct: 616 GSRTSLQGEREPGLLPYGSRDQTSKDKPKVKTKGRPRAAASNEPKPAVPPSSEKKKHKSS 675
Query: 233 RPAVANGTSRPQ 244
PA + S P+
Sbjct: 676 LPAPSKALSGPE 687
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 47.4 bits (111), Expect = 1e-05
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 12/133 (9%)
Query: 115 GSSKIQARMEQQPTRPPQTSQPPPP--PPP--MPFRAPTKPPVGPKTSPLKDNPSPEPQL 170
G+ ++ R + PP+ PPPP PPP + P PP G P K SP+P L
Sbjct: 1173 GTGTVRRRPASEQAGPPELPPPPPPAEPPPTDLAHLPPLPPPEGEARKPAKPPVSPKPVL 1232
Query: 171 DDIKRELRAEVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPY 230
+L+ + G S + + + G+ S P PP P+ +P
Sbjct: 1233 TQPVPKLQGSPTPTSKKVPLPGPGSPEVKRAHGTPPPVS--------PKPPPPPTAPKPV 1284
Query: 231 NSRPAVANGTSRP 243
+ + +G++ P
Sbjct: 1285 KAVAGLPSGSAGP 1297
Score = 38.5 bits (88), Expect = 0.006
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 9/120 (7%)
Query: 115 GSSKIQARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIK 174
G+ K R + RP + PPPPP + ++ L D P P+ + +D
Sbjct: 925 GADKNVNRSQSFAVRPRKKGPPPPPPK--------RSSSALASANLADEPVPDAEPEDGL 976
Query: 175 RELRAEVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRP 234
+RA+ ++ S + S+ S S + + SS GG PP+ H P + P
Sbjct: 977 LGVRAQCRRASDLAGSVDTGSAGSVKSIAAMLELSSIGGGGRAARRPPE-GHPTPRPASP 1035
Score = 30.4 bits (67), Expect = 1.7
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 128 TRPPQTSQPPPPPP-PMPFRAPTKPPVG-----PKTSPLKDNPS 165
T PP + +PPPPP P P +A P G P SP + P+
Sbjct: 1266 TPPPVSPKPPPPPTAPKPVKAVAGLPSGSAGPSPAPSPARQPPA 1309
Score = 28.1 bits (61), Expect = 8.4
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 130 PPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEP 168
PP S PPPPP P K G + +P+P P
Sbjct: 1267 PPPVSPKPPPPPT--APKPVKAVAGLPSGSAGPSPAPSP 1303
>gi|157743257 POU domain, class 6, transcription factor 2 [Homo
sapiens]
Length = 691
Score = 47.4 bits (111), Expect = 1e-05
Identities = 37/143 (25%), Positives = 55/143 (38%), Gaps = 5/143 (3%)
Query: 120 QARMEQQPTRPPQTSQPPPPPPPMPFRAPTKP--PVGPKTSPLKDNPSPEPQLDDIKREL 177
Q + +QQ PP T+Q P P P P ++ +P P P+ P P P +++
Sbjct: 188 QQQQQQQQQPPPSTNQHPQPAPQAPSQSQQQPLQPTPPQQPPPASQQPPAP-TSQLQQAP 246
Query: 178 RAEVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSH--QQPYNSRPA 235
+ + S + S +SSS S S G P +PP P P S+ A
Sbjct: 247 QPQQHQPHSHSQNQNQPSPTQQSSSPPQKPSQSPGHGLPSPLTPPNPLQLVNNPLASQAA 306
Query: 236 VANGTSRPQGSNQLMNTLRNDLQ 258
A S+Q + LQ
Sbjct: 307 AAAAAMSSIASSQAFGNALSSLQ 329
>gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]
Length = 651
Score = 47.0 bits (110), Expect = 2e-05
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 144 PFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAEVDIIEQMSSSSGSSSSDSESSSG 203
P P PP G + + P PEP DD LR +D Q+S+ + D++
Sbjct: 28 PGPGPAPPPEGAQEAAPAPRPPPEP--DDAAAALRLALD---QLSALGLGGAGDTDEEGA 82
Query: 204 SDDDSSSSGGEDNG----PASPPQPSHQQPYNSRPAVANGT 240
+ D ++++GG D G P P P P PAVA G+
Sbjct: 83 AGDGAAAAGGADGGAAPEPVPPDGPEAGAPPTLAPAVAPGS 123
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 46.6 bits (109), Expect = 2e-05
Identities = 56/246 (22%), Positives = 79/246 (32%), Gaps = 56/246 (22%)
Query: 34 RYDFKPASIDTSCEGELQVGKGDEVTITLPHIPGSTPPMTVFKGNK------RPYQKDCV 87
R D +P + E +V GD I LP +P P + ++ K + C
Sbjct: 114 RLDLRPGESEDMLELVAEVRIGDRDPIPLP-VPSLLPRLRAWRTGKTVSPQSNSSRPTCA 172
Query: 88 LIINHDTGEYVLEKLSSSIQVKKTRAEGSSKIQARMEQQPTRPPQTSQPPPPPPPMPFRA 147
+ TG+ + P+ P +S P PPPPP P
Sbjct: 173 RHLTLGTGD---------------GGPAPPPAPSSASSSPSPSPSSSSPSPPPPPPPPAP 217
Query: 148 PTKP-------------------------------PVGPKTSPLKDNPSPEPQLDDIKRE 176
P P P G S PSPE + ++ + E
Sbjct: 218 PAPPAPRFDIYDPFHPTDEAYSPPPAPEQKYDPFEPTGSNPSSSAGTPSPEEEEEEEEEE 277
Query: 177 LRAEVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGG--EDNGPASPPQPSHQQPYNSRP 234
E D E+ S S S SE+ +G DD+S S D P QP+ P P
Sbjct: 278 EEEEED-EEEEEGLSQSISRISETLAGIYDDNSLSQDFPGDESPRPDAQPTQPTPAPGTP 336
Query: 235 AVANGT 240
+ T
Sbjct: 337 PQVDST 342
Score = 33.5 bits (75), Expect = 0.20
Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 31/150 (20%)
Query: 106 IQVKKTRAEGSSKI-------------QARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPP 152
+ +KK++A+ S+ + R + P+ PP + PPPP +
Sbjct: 940 VSLKKSKADSCSQAAGTKGAEETSWSGEERAAKVPSTPPPKAAPPPPALTPDSQTVDSSC 999
Query: 153 VGPKTSPLKDNPSPE-------PQLDDIKRELRAEVDIIEQMSSSSGSSSSDSESSSGSD 205
P+ S L + + E + ++ + E E + EQ +++ ++S+ + + S +
Sbjct: 1000 KTPEVSFLPEEATEEAGVRGGAEEEEEEEEEEEEEEEEEEQQPATTTATSTAAAAPSTAP 1059
Query: 206 DDSSSSG--GEDNGPAS---------PPQP 224
S++G G ++GPAS PP P
Sbjct: 1060 SAGSTAGDSGAEDGPASRVSQLPTLPPPMP 1089
Score = 30.4 bits (67), Expect = 1.7
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 15/117 (12%)
Query: 129 RPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAEVDIIEQMS 188
RPP+ S P PPP KPPV S + S K +L+++V ++ +
Sbjct: 796 RPPKESAPSSGPPP-------KPPV----SSGSGSSSSSSSCSSRKVKLQSKVAVLIREG 844
Query: 189 SSSGSSSSDSESSS-GSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGTSRPQ 244
SS + + D+ S+ GS S E P +P + P A A G+++P+
Sbjct: 845 VSSTTPAKDAASAGLGSIGVKFSRDRESRSPFL--KPDERAPTEMAKA-APGSTKPK 898
>gi|55741473 HECT, C2 and WW domain containing E3 ubiquitin protein
ligase 2 [Homo sapiens]
Length = 1572
Score = 46.6 bits (109), Expect = 2e-05
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 12/144 (8%)
Query: 114 EGSSKIQARMEQQPTRPPQTSQPPPP-----PPPMPFRAPTKPPVGPKTSPLKDNPSPEP 168
+GS Q ++E P + S P +P A + P GP + P P+P
Sbjct: 499 DGSLTSQTKLEDNPVENEEASTHEAASFEDKPENLPELAESSLPAGPAPEEGEGGPEPQP 558
Query: 169 QLDDIKRELRAEVDIIEQMSSSSGSSSSDSESSSG---SDDDSSSSGGEDNGPASPPQPS 225
D EL + ++Q +S + + +SD+ S S+ +S G E + +S +PS
Sbjct: 559 SADQGSAELCGSQE-VDQPTSGADTGTSDASGGSRRAVSETESLDQGSEPSQVSSETEPS 617
Query: 226 HQQPYNSRPAVANGTSRPQGSNQL 249
S V+ ++RP+G + L
Sbjct: 618 DPARTES---VSEASTRPEGESDL 638
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 45.8 bits (107), Expect = 4e-05
Identities = 35/96 (36%), Positives = 38/96 (39%), Gaps = 26/96 (27%)
Query: 127 PTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAEVDIIEQ 186
P P QPPP PPP + P + PK AEV
Sbjct: 59 PCAPGPPPQPPPQPPPPQYDYPPQSTFKPK----------------------AEV----P 92
Query: 187 MSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPP 222
SSSS SSSS S SSS S SSSS + P PP
Sbjct: 93 SSSSSSSSSSSSSSSSSSSSSSSSSQAKKPDPPLPP 128
Score = 28.1 bits (61), Expect = 8.4
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 107 QVKKTRAEGSSKIQARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSP 166
+V + + SS + + +SQ P PP+P P G PL D P
Sbjct: 90 EVPSSSSSSSSSSSSSSSSSSSSSSSSSQAKKPDPPLP------PAFGAPPPPLFDAAFP 143
Query: 167 EPQ 169
PQ
Sbjct: 144 TPQ 146
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 45.8 bits (107), Expect = 4e-05
Identities = 35/96 (36%), Positives = 38/96 (39%), Gaps = 26/96 (27%)
Query: 127 PTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAEVDIIEQ 186
P P QPPP PPP + P + PK AEV
Sbjct: 59 PCAPGPPPQPPPQPPPPQYDYPPQSTFKPK----------------------AEV----P 92
Query: 187 MSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPP 222
SSSS SSSS S SSS S SSSS + P PP
Sbjct: 93 SSSSSSSSSSSSSSSSSSSSSSSSSQAKKPDPPLPP 128
Score = 28.1 bits (61), Expect = 8.4
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 107 QVKKTRAEGSSKIQARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSP 166
+V + + SS + + +SQ P PP+P P G PL D P
Sbjct: 90 EVPSSSSSSSSSSSSSSSSSSSSSSSSSQAKKPDPPLP------PAFGAPPPPLFDAAFP 143
Query: 167 EPQ 169
PQ
Sbjct: 144 TPQ 146
>gi|169163027 PREDICTED: similar to Putative acrosin-like protease
[Homo sapiens]
Length = 355
Score = 45.8 bits (107), Expect = 4e-05
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 129 RPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAEVDIIEQMS 188
RPP + PPPPPPP P P PP P + + PQ + L+ +++++ +
Sbjct: 279 RPPPSPPPPPPPPPSPLPPPPPPP-----PPTPSSTTKLPQGLSFAKRLQQLIEVLKGKT 333
Query: 189 SSSGSSSSDSESSSGSDDDSSS 210
S G + D E++ + S+S
Sbjct: 334 YSDGKNHYDMETTELPELTSTS 355
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 45.8 bits (107), Expect = 4e-05
Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 18/175 (10%)
Query: 109 KKTRAEGSSKIQARMEQQPTRP---PQTSQPPPPPPPMPFRAPTKPP--VGPKTSPLK-- 161
K + +E SS + +++P + P +S PPP PP T+PP K P++
Sbjct: 263 KSSSSEDSSSDEEEEQKKPMKNKPGPYSSVPPPSAPPPKKSLGTQPPKKAVEKQQPVESS 322
Query: 162 -------DNPSPEPQLDDIKRELRAEVDIIEQMSSSSGSSSSDSESSSGSDDDS-SSSGG 213
D+ S E + K + ++ SSS S+S S DD++ S G
Sbjct: 323 EDSSDESDSSSEEEKKPPTKAVVSKATTKPPPAKKAAESSSDSSDSDSSEDDEAPSKPAG 382
Query: 214 EDNGPASPPQPSHQQPYNSRPAVANGTSRPQGSNQLMNTLRNDLQLSESGSDSDD 268
++ P + + P +PA A +P G Q + T + D SE S S +
Sbjct: 383 TTKNSSNKPAVTTKSP-AVKPAAA--PKQPVGGGQKLLTRKADSSSSEEESSSSE 434
Score = 35.8 bits (81), Expect = 0.040
Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 22/169 (13%)
Query: 113 AEGSSKIQARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPE----- 167
++ SS+ + Q+P P T + PP P RA K G S + S
Sbjct: 171 SDSSSEDEPPKNQKPKITPVTVKAQTKAPPKPARAAPKIANGKAASSSSSSSSSSSSDDS 230
Query: 168 --------PQLDDIKRELRAEVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPA 219
P+ K+++ A+ + + + SSSS+ SS ++ + +
Sbjct: 231 EEEKAAATPKKTVPKKQVVAKAPVKAATTPTRKSSSSEDSSSDEEEEQKKPMKNKPGPYS 290
Query: 220 SPPQPSHQQPYNSRPAVANGTSRPQGSNQLMNTLRNDLQLSESGSDSDD 268
S P PS P S GT P+ + + + ++ SE SD D
Sbjct: 291 SVPPPSAPPPKKSL-----GTQPPKKAVE----KQQPVESSEDSSDESD 330
Score = 28.9 bits (63), Expect = 4.9
Identities = 30/164 (18%), Positives = 59/164 (35%), Gaps = 8/164 (4%)
Query: 109 KKTRAEGSSKIQARMEQQPTRPPQTSQPPPPPPPMPFRAPTKP-PVGPKTSPLKDNPSPE 167
+K + S + + E++ T+ + P P K P G + S + S
Sbjct: 419 RKADSSSSEEESSSSEEEKTKKMVATTKPKATAKAALSLPAKQAPQGSRDSSSDSDSSSS 478
Query: 168 PQLDDI-------KRELRAEVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPAS 220
+ ++ K+ + +S+ ++S +SS SDD S + G S
Sbjct: 479 EEEEEKTSKSAVKKKPQKVAGGAAPSKPASAKKGKAESSNSSSSDDSSEEEEEKLKGKGS 538
Query: 221 PPQPSHQQPYNSRPAVANGTSRPQGSNQLMNTLRNDLQLSESGS 264
P + + S NG + + + + +S+SGS
Sbjct: 539 PRPQAPKANGTSALTAQNGKAAKNSEEEEEEKKKAAVVVSKSGS 582
Score = 28.5 bits (62), Expect = 6.4
Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 25/144 (17%)
Query: 109 KKTRAEGSSKIQARMEQQPTRPPQTSQPPPPP-----PPMPFRAPTKPPVGPKTSPLKDN 163
KK + K QA+ + P + ++S PP KP + P T +
Sbjct: 142 KKQPVQKGVKPQAKAAKAPPKKAKSSDSDSDSSSEDEPPKN----QKPKITPVTVKAQTK 197
Query: 164 PSPEPQLDDIKRELRAEVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQ 223
P+P RA I ++ +SSS S SSS S DDS E+ A+P +
Sbjct: 198 APPKPA--------RAAPKI----ANGKAASSSSSSSSSSSSDDSE----EEKAAATPKK 241
Query: 224 PSHQQPYNSRPAVANGTSRPQGSN 247
++ ++ V T+ + S+
Sbjct: 242 TVPKKQVVAKAPVKAATTPTRKSS 265
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 45.8 bits (107), Expect = 4e-05
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 109 KKTRAEGSSKIQARMEQQPT---RPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPS 165
KK A+ Q + Q P +PP Q PPPP P P A ++PP GP + P
Sbjct: 2489 KKALADQQKAQQPAVAQPPPPQPQPPPPPQQPPPPLPQPQAAGSQPPAGPPAVQPQPQPQ 2548
Query: 166 PEPQLDDIKRELRAE 180
P+ Q ++ +A+
Sbjct: 2549 PQTQPQPVQAPAKAQ 2563
Score = 30.0 bits (66), Expect = 2.2
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 103 SSSIQVKKTRAEGSSKIQARMEQQPT-------RPPQTSQPPPPPPPMPFRAPTKPPVGP 155
+S +QV + + + S Q + + T + + PP PPPP AP +P
Sbjct: 2751 TSQVQVPQIQGQAQSPAQIKAVGKLTPEHLIKMQKQKLQMPPQPPPPQAQSAPPQPTAQV 2810
Query: 156 KTSPLKDNPSPEPQLDDI 173
+ + PQL +
Sbjct: 2811 QVQTSQPPQQQSPQLTTV 2828
Score = 28.1 bits (61), Expect = 8.4
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 108 VKKTRAEGSSKIQARMEQQPTRPPQT-SQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSP 166
V K E K+Q + Q P +PP +Q PP P + T P ++ L +P
Sbjct: 2772 VGKLTPEHLIKMQKQKLQMPPQPPPPQAQSAPPQPTAQVQVQTSQPPQQQSPQLTTVTAP 2831
Query: 167 EP 168
P
Sbjct: 2832 RP 2833
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 45.8 bits (107), Expect = 4e-05
Identities = 32/99 (32%), Positives = 40/99 (40%), Gaps = 10/99 (10%)
Query: 123 MEQQP-TRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDN------PSPEPQLDDIKR 175
ME P T PP S+ PPPP P P P+ PP P P + P P+ + D
Sbjct: 1 MEAAPGTPPPPPSESPPPPSPPPPSTPSPPPCSPDARPATPHLLHHRLPLPDDREDGELE 60
Query: 176 ELRAEVDIIEQMSSSSGS---SSSDSESSSGSDDDSSSS 211
E E D E+ +SG S + SD D S
Sbjct: 61 EGELEDDGAEETQDTSGGPERSRKEKGEKHHSDSDEEKS 99
Score = 38.5 bits (88), Expect = 0.006
Identities = 33/123 (26%), Positives = 45/123 (36%), Gaps = 23/123 (18%)
Query: 125 QQPT----RPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAE 180
Q PT RP Q PPPPPPP P P + P+ P PL +P Q D +++ +
Sbjct: 527 QAPTSPNGRPMQGGPPPPPPPPPPPPGPPQMPM-PVHEPL--SPQQLQQQDMYNKKIPSL 583
Query: 181 VDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGT 240
+I+ + + + G GP PP P P P G
Sbjct: 584 FEIVVRPTGQL----------------AEKLGVRFPGPGGPPGPMGPGPNMGPPGPMGGP 627
Query: 241 SRP 243
P
Sbjct: 628 MHP 630
Score = 31.6 bits (70), Expect = 0.76
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 123 MEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKD 162
M+ P PP PPP PP MP P P+ P+ +D
Sbjct: 537 MQGGPPPPPPPPPPPPGPPQMPM--PVHEPLSPQQLQQQD 574
>gi|68348716 AF4/FMR2 family, member 3 isoform 2 [Homo sapiens]
Length = 1251
Score = 45.4 bits (106), Expect = 5e-05
Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 17/88 (19%)
Query: 188 SSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQ-QPYNSR------------- 233
SS S SSSSDSESSSGSD ++ SS E G P S + +P +S
Sbjct: 443 SSGSSSSSSDSESSSGSDSETESSSSESEGSKPPHFSSPEAEPASSNKWQLDKWLNKVNP 502
Query: 234 ---PAVANGTSRPQGSNQLMNTLRNDLQ 258
P + S SNQ N ++ D+Q
Sbjct: 503 HKPPILIQNESHGSESNQYYNPVKEDVQ 530
>gi|68348714 AF4/FMR2 family, member 3 isoform 1 [Homo sapiens]
Length = 1226
Score = 45.4 bits (106), Expect = 5e-05
Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 17/88 (19%)
Query: 188 SSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQ-QPYNSR------------- 233
SS S SSSSDSESSSGSD ++ SS E G P S + +P +S
Sbjct: 418 SSGSSSSSSDSESSSGSDSETESSSSESEGSKPPHFSSPEAEPASSNKWQLDKWLNKVNP 477
Query: 234 ---PAVANGTSRPQGSNQLMNTLRNDLQ 258
P + S SNQ N ++ D+Q
Sbjct: 478 HKPPILIQNESHGSESNQYYNPVKEDVQ 505
>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
isoform d [Homo sapiens]
Length = 756
Score = 45.1 bits (105), Expect = 7e-05
Identities = 34/132 (25%), Positives = 51/132 (38%), Gaps = 34/132 (25%)
Query: 112 RAEGSSKIQARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLD 171
R +S + + P + P QPPPP PP P +PP P SP ++ P
Sbjct: 577 RDNNNSNNRGSYNRAPQQQPPPQQPPPPQPP-----PQQPPPPPSYSPARNPPG------ 625
Query: 172 DIKRELRAEVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYN 231
+ S+ GSS++ S + S SPPQPS+ QP
Sbjct: 626 ---------ASTYNKNSNIPGSSANTSTPTVSS--------------YSPPQPSYSQPPY 662
Query: 232 SRPAVANGTSRP 243
++ + G + P
Sbjct: 663 NQGGYSQGYTAP 674
>gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1
isoform a [Homo sapiens]
Length = 856
Score = 45.1 bits (105), Expect = 7e-05
Identities = 34/132 (25%), Positives = 51/132 (38%), Gaps = 34/132 (25%)
Query: 112 RAEGSSKIQARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLD 171
R +S + + P + P QPPPP PP P +PP P SP ++ P
Sbjct: 677 RDNNNSNNRGSYNRAPQQQPPPQQPPPPQPP-----PQQPPPPPSYSPARNPPG------ 725
Query: 172 DIKRELRAEVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYN 231
+ S+ GSS++ S + S SPPQPS+ QP
Sbjct: 726 ---------ASTYNKNSNIPGSSANTSTPTVSS--------------YSPPQPSYSQPPY 762
Query: 232 SRPAVANGTSRP 243
++ + G + P
Sbjct: 763 NQGGYSQGYTAP 774
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 45.1 bits (105), Expect = 7e-05
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 9/133 (6%)
Query: 116 SSKIQARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKR 175
+ +++AR P R P+ P PPM P +PP+ P P +P PEP+ D
Sbjct: 1245 AKEVEARPPLSPERAPEHDLEVEPEPPMMLPLPLQPPLPPPRPPRPPSPPPEPETTDASH 1304
Query: 176 ELRAEVDIIEQ--------MSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQ 227
+ E S + S S+++ ++ + S G +SP P
Sbjct: 1305 PSVPPEPLAEDHPPHTPGLCGSLAKSQSTETVPATPGGEPPLSGGSSGLSLSSPQVPGSP 1364
Query: 228 QPYNS-RPAVANG 239
Y + P++++G
Sbjct: 1365 FSYPAPSPSLSSG 1377
Score = 36.6 bits (83), Expect = 0.024
Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 3/89 (3%)
Query: 136 PPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAEVDIIEQMSSSSGSSS 195
PPPP PP P P PPV P P K+ + P + I R ++ E+ + S
Sbjct: 1539 PPPPLPPQPPPPPPPPPVEPTKLPFKELDNQWPS-EAIPPGPRGRDEVTEEYMELAKSRG 1597
Query: 196 SDSESSSGSDDDSSSSGGEDNGPASPPQP 224
+D G SPPQP
Sbjct: 1598 PWRRPPKKRHEDLVPPAGSPE--LSPPQP 1624
Score = 34.7 bits (78), Expect = 0.090
Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 12/64 (18%)
Query: 115 GSSKIQARMEQQPTRP-------PQTSQPPPPPP-----PMPFRAPTKPPVGPKTSPLKD 162
G++ + A PT P P PPPPPP PMP P PP P P
Sbjct: 665 GAAAVAAPSVLAPTLPLPPPPGFPPLPPPPPPPPPQPGFPMPPPLPPPPPPPPPAHPAVT 724
Query: 163 NPSP 166
P P
Sbjct: 725 VPPP 728
Score = 32.7 bits (73), Expect = 0.34
Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 11/56 (19%)
Query: 127 PTRPPQTSQPPPPPP--------PMPFRAP---TKPPVGPKTSPLKDNPSPEPQLD 171
P PP PPPPPP P P AP PP+ P P P Q+D
Sbjct: 704 PMPPPLPPPPPPPPPAHPAVTVPPPPLPAPPGVPPPPILPPLPPFPPGLFPVMQVD 759
Score = 32.3 bits (72), Expect = 0.45
Identities = 18/44 (40%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 127 PTRPPQTS--QPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEP 168
P PPQ PPP PPP P P P V PL P P
Sbjct: 695 PPPPPQPGFPMPPPLPPPPPPPPPAHPAVTVPPPPLPAPPGVPP 738
Score = 32.3 bits (72), Expect = 0.45
Identities = 16/41 (39%), Positives = 17/41 (41%)
Query: 126 QPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSP 166
QP P PPPPPPP P P P +P P P
Sbjct: 700 QPGFPMPPPLPPPPPPPPPAHPAVTVPPPPLPAPPGVPPPP 740
Score = 32.0 bits (71), Expect = 0.58
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 127 PTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEP 168
P PP P PPPPP P P +P P PL P P P
Sbjct: 680 PLPPPPGFPPLPPPPPPP---PPQPGF-PMPPPLPPPPPPPP 717
Score = 31.2 bits (69), Expect = 0.99
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 127 PTRPPQTSQPP-PPPPPMPFRAPTKPPVGPK-TSPLKDNPSP 166
P PP QP P PPP+P P PP P T P P+P
Sbjct: 692 PPPPPPPPQPGFPMPPPLPPPPPPPPPAHPAVTVPPPPLPAP 733
Score = 30.0 bits (66), Expect = 2.2
Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 19/127 (14%)
Query: 126 QPTRPPQTSQPPPPPPP----------MPFRAPTKPPVGPKTSPLKDNPS-PEPQLDDIK 174
+P + PP PPPP F +P P T L+ +P+ PE D +
Sbjct: 441 EPLAKEKPGTPPGPPPPDTNSMELGGRPTFGWSPEPCDSPGTPTLESSPAGPEKPHDSL- 499
Query: 175 RELRAEVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASP----PQPSHQ--Q 228
+ R E+ + EQ + DS++ + SS P +P QP +
Sbjct: 500 -DSRIEMLLKEQRTKLLFLREPDSDTELQMEGSPISSSSSQLSPLAPFGTNSQPGFRGPT 558
Query: 229 PYNSRPA 235
P +SRP+
Sbjct: 559 PPSSRPS 565
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 44.7 bits (104), Expect = 9e-05
Identities = 45/175 (25%), Positives = 61/175 (34%), Gaps = 31/175 (17%)
Query: 121 ARMEQQPTRPPQTSQPPPPPP----------PMPFRAPTKPPVGPKTSPLKDNPSPE--- 167
+R Q RPP + PPP PP P P R + P + +P+PE
Sbjct: 418 SRPTDQDYRPPASEAPPPEPPEPGGGGGGGGPSPEREEVRTSPRPASPARSGSPAPETTN 477
Query: 168 ---PQLDDIKRELRAEVDIIEQMSSSSGSSSSDSESSSGS-------DDDSSSSGGEDNG 217
P + R E+ + EQ S S +S E S D S G +G
Sbjct: 478 ESVPFAQHSSLDSRIEMLLKEQRSKFSFLASDTEEEEENSSMVLGARDTGSEVPSGSGHG 537
Query: 218 PASPPQPSHQQPYNSRPAVANGTSRPQGSNQLMNTL-RNDLQLSESGSD---SDD 268
P +PP P N G+ P + + +N SG D SDD
Sbjct: 538 PCTPP----PAPANFEDVAPTGSGEPGATRESPKANGQNQASPCSSGDDMEISDD 588
Score = 36.2 bits (82), Expect = 0.031
Identities = 24/52 (46%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 185 EQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQ--PSHQQPYNSRP 234
E SSSS SSSS S SSS S SS S ED P PS P P
Sbjct: 1034 ESSSSSSSSSSSSSSSSSSSSSSSSESSSEDEEEEERPAALPSASPPPREVP 1085
Score = 35.0 bits (79), Expect = 0.069
Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 10/115 (8%)
Query: 126 QPTRPPQTSQPPPPPPPMP---FRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAEVD 182
+PT PP + PP P P P F +P + + + P+PQ +RE E
Sbjct: 1307 KPT-PPAPALRPPEPVPAPAALFSSPADEVLEAPEVVVAEAEEPKPQQLQQQREEGEEEG 1365
Query: 183 IIEQMSSSSGSSSSDSESSSGSDDD----SSSSGGEDNGPASPPQPSHQQPYNSR 233
E+ SSDS SSS + S S P PP P + Y R
Sbjct: 1366 --EEEGEEEEEESSDSSSSSDGEGALRRRSLRSHARRRRPPPPPPPPPPRAYEPR 1418
Score = 34.7 bits (78), Expect = 0.090
Identities = 21/66 (31%), Positives = 23/66 (34%), Gaps = 15/66 (22%)
Query: 127 PTRPPQTSQPPPPPPPMPFRAPTKP---------------PVGPKTSPLKDNPSPEPQLD 171
PT P Q PPPPPPP P + P P GP P P P +
Sbjct: 598 PTPPQQPPPPPPPPPPPPPYLASLPLGYPPHQPAYLLPPRPDGPPPPEYPPPPPPPPHIY 657
Query: 172 DIKREL 177
D L
Sbjct: 658 DFVNSL 663
Score = 34.7 bits (78), Expect = 0.090
Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 13/96 (13%)
Query: 161 KDNPSPEPQLDDIKRELRAEVDIIEQMSSSS-------------GSSSSDSESSSGSDDD 207
+++ E +D K+E E+ SSS +S S+S SSS S
Sbjct: 985 EEDEDREEAVDTTKKETEVSDGEDEESDSSSKCSLYADSDGENDSTSDSESSSSSSSSSS 1044
Query: 208 SSSSGGEDNGPASPPQPSHQQPYNSRPAVANGTSRP 243
SSSS + +S S + RPA S P
Sbjct: 1045 SSSSSSSSSSSSSSESSSEDEEEEERPAALPSASPP 1080
Score = 34.7 bits (78), Expect = 0.090
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 103 SSSIQVKKTRAEGSSKIQARMEQQPTRPPQ--TSQPPPPPPPMPFRAPTKPPVGPKTSPL 160
SSS + + SS+ + E++ RP ++ PPP P+P AP + PV + +
Sbjct: 1044 SSSSSSSSSSSSSSSESSSEDEEEEERPAALPSASPPPREVPVPTPAPVEVPVPERVAGS 1103
Query: 161 KDNPSPEPQ 169
P PE +
Sbjct: 1104 PVTPLPEQE 1112
Score = 31.6 bits (70), Expect = 0.76
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Query: 127 PTRPPQTSQPPPPPPPMPFRAPTKP-PVGP------KT---SPLKDNPSPEP 168
P RPP+ PP P P P P+ P P+ P KT S ++ P+PEP
Sbjct: 1130 PLRPPEPPAGPPAPAPRPDERPSSPIPLLPPPKKRRKTVSFSAIEVVPAPEP 1181
Score = 30.8 bits (68), Expect = 1.3
Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 188 SSSSGSSSSDSESSSGSDDDSSSS--GGEDNGPASPPQPSHQQPYNSRPAVANGTSRPQG 245
+SSS SSSS S SSS S SSS + N PA + Q + S P P G
Sbjct: 335 ASSSASSSSLSSSSSSSSSSSSSQFRSSDANYPAYYESWNRYQRHTSYPPRRATREEPPG 394
Query: 246 SNQLMNT 252
+ NT
Sbjct: 395 APFAENT 401
Score = 30.8 bits (68), Expect = 1.3
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 11/49 (22%)
Query: 124 EQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDD 172
E P RP ++ PP P+ P +PP GP P+P P+ D+
Sbjct: 1112 EASPARPAGPTEESPPSAPL---RPPEPPAGP--------PAPAPRPDE 1149
Score = 29.6 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 126 QPTRPPQTSQPPPPPPP 142
+P PP PPPPPPP
Sbjct: 637 RPDGPPPPEYPPPPPPP 653
Score = 28.9 bits (63), Expect = 4.9
Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 127 PTRPPQTSQPPPPPPPMPFRAPTKPP 152
P P Q PPPPPP P P PP
Sbjct: 594 PPPAPTPPQQPPPPPPPP---PPPPP 616
Score = 28.5 bits (62), Expect = 6.4
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 156 KTSPLKDNPSPEPQLDDIKRELRAEVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGED 215
K S D+ D + + SSSS SSSS SESSS +++
Sbjct: 1016 KCSLYADSDGENDSTSDSESSSSSSSSSSSSSSSSSSSSSSSSESSSEDEEEEERPAALP 1075
Query: 216 NGPASPP 222
+ ASPP
Sbjct: 1076 S--ASPP 1080
Score = 28.1 bits (61), Expect = 8.4
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 93 DTGEYVLEKLSSSIQVKKTRAEGSSKIQARMEQQPTRPPQTSQPPPPPPPMPF 145
+ GE E+ S S + ++G ++ R + R + PPPPPPP +
Sbjct: 1367 EEGEEEEEESSDS----SSSSDGEGALRRRSLRSHARRRRPPPPPPPPPPRAY 1415
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 44.7 bits (104), Expect = 9e-05
Identities = 50/191 (26%), Positives = 76/191 (39%), Gaps = 27/191 (14%)
Query: 104 SSIQVKKTRAEGSSKIQARMEQQPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDN 163
+S Q K RA SK + ++++ TR P ++P P PPP P P V +
Sbjct: 586 ASPQAKPLRASEPSKTPSSVQEKKTRVPTKAEPMPKPPPETTPTPATPKVKSGVRRAEPA 645
Query: 164 PSPEPQLDDIKRELRAEVDIIEQMSSSSGSSSSDSESSSG-SDDDSSSSGGEDNGPAS-- 220
+ + + AE D++ + S S S S S +G S D SSS E G
Sbjct: 646 TPVVKAVPEAPKGGEAE-DLVGKPYSQDASRSPQSLSDTGYSSDGISSSQSEITGVVQQE 704
Query: 221 -------------PPQPS--HQQPYNSRPAV-ANG-----TSRP--QGSNQLMNTLRNDL 257
PP PS H+ + RP + A G S+P G+ + + L
Sbjct: 705 VEQLDSAGVTGPHPPSPSEIHKVGSSMRPLLQAQGLAPSERSKPLSSGTGEEQKQRPHSL 764
Query: 258 QLSESGSDSDD 268
++ DSD+
Sbjct: 765 SITPEAFDSDE 775
Score = 34.7 bits (78), Expect = 0.090
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 16/110 (14%)
Query: 62 LPHIPGS-TPPMTVFKGNKRPYQKDCVLIINHDTGE---YVLEKLSS--SIQVKKTRAEG 115
+P PG+ TP V +G + P++ ++ ++ + +++ L+S S Q + A
Sbjct: 1517 MPRSPGAPTPSPMVAQGTQTPHRPSTPRLVWQESSQEAPFMVITLASDASSQTRMVHASA 1576
Query: 116 S-SKIQARMEQQPTR-------PPQTSQPPPPPPPMPF--RAPTKPPVGP 155
S S + + E QPT PP SQ PP PP P R P+ GP
Sbjct: 1577 STSPLCSPTETQPTTHGYSQTTPPSVSQLPPEPPGPPGFPRVPSAGADGP 1626
Score = 28.5 bits (62), Expect = 6.4
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 122 RMEQQPTRP--PQTSQPPPPPPPMPFRAPTKPPVG 154
R+ QP +P P T++P PP P ++ T P G
Sbjct: 301 RVSPQPPQPTKPSTAEPRPPAGEAPAKSATAVPAG 335
Score = 28.5 bits (62), Expect = 6.4
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 120 QARMEQQ--PTR---PPQTSQPPPPPPPMPFRAPTKPPVGP 155
QAR++QQ PT P SQP P P P A P GP
Sbjct: 3796 QARLQQQSQPTTRGSAPAASQPAGKPQPGPSTATGPQPAGP 3836
>gi|148613878 acrosin precursor [Homo sapiens]
Length = 421
Score = 44.7 bits (104), Expect = 9e-05
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 127 PTRPP--QTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKRELRAEVDII 184
P RPP Q PP PPPP P A PP P P + + PQ + L+ ++++
Sbjct: 336 PPRPPAAQPRPPPSPPPPPPPPASPLPPPPPPPPPTPSSTTKLPQGLSFAKRLQQLIEVL 395
Query: 185 EQMSSSSGSSSSDSESSSGSDDDSSS 210
+ + S G + D E++ + S+S
Sbjct: 396 KGKTYSDGKNHYDMETTELPELTSTS 421
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 44.3 bits (103), Expect = 1e-04
Identities = 25/56 (44%), Positives = 32/56 (57%)
Query: 188 SSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGTSRP 243
SSSS SSSS S SSS +D+DSS S ++ PA PS Q ++ G +RP
Sbjct: 2657 SSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAGPSAQAALPTKATKQAGKARP 2712
Score = 38.9 bits (89), Expect = 0.005
Identities = 35/132 (26%), Positives = 47/132 (35%), Gaps = 5/132 (3%)
Query: 140 PPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDIKR-----ELRAEVDIIEQMSSSSGSS 194
PP P P L P P +D + +AE D E+ SSS SS
Sbjct: 2505 PPAAGSSEPKAPWPKATDGDLAQEPGPGLTFEDSGNPKSPDKAQAEQDGAEESESSSSSS 2564
Query: 195 SSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGTSRPQGSNQLMNTLR 254
S S SSS S S + GE+ G + N A + S S+ ++
Sbjct: 2565 SGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSSSSSSS 2624
Query: 255 NDLQLSESGSDS 266
+ S S S S
Sbjct: 2625 SSSSSSSSSSSS 2636
Score = 35.8 bits (81), Expect = 0.040
Identities = 22/59 (37%), Positives = 29/59 (49%)
Query: 188 SSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGTSRPQGS 246
SSSS SSSS S SSS S SSSS + +S S +S + ++ T+ S
Sbjct: 2620 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSS 2678
Score = 35.4 bits (80), Expect = 0.053
Identities = 23/64 (35%), Positives = 30/64 (46%)
Query: 178 RAEVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVA 237
RA SSSS SSSS S SSS S SSSS + +S S +S + +
Sbjct: 2608 RAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2667
Query: 238 NGTS 241
+ +S
Sbjct: 2668 SSSS 2671
Score = 35.4 bits (80), Expect = 0.053
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 188 SSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGTSRPQGSN 247
SSSS SSSS S SSS S SSSS + +S S +S + ++ ++ + S+
Sbjct: 2619 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSS 2678
Score = 34.7 bits (78), Expect = 0.090
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 188 SSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGTSRPQGS 246
+SSS SSSS S SSS S SSSS + +S S +S + ++ +S S
Sbjct: 2613 ASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2671
Score = 33.9 bits (76), Expect = 0.15
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 189 SSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGTSRPQGSNQ 248
++S +SSS S SSS S SSSS + +S S +S + ++ +S S+
Sbjct: 2609 AASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2668
Query: 249 LMNTLRNDLQLSESGSDSDD 268
+T D S SDD
Sbjct: 2669 SSSTTDED-----SSCSSDD 2683
Score = 32.3 bits (72), Expect = 0.45
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 188 SSSSGSSSSDSESSSGSDDDSSSSGGEDNG----------PASPPQPSHQQPYNSRPAVA 237
SSSS SSSS SE+ + D + GG G ASP S +S + +
Sbjct: 2569 SSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSSS 2628
Query: 238 NGTSRPQGSNQLMNTLRNDLQLSESGSDS 266
+ +S S+ ++ + S S S S
Sbjct: 2629 SSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2657
Score = 31.6 bits (70), Expect = 0.76
Identities = 31/137 (22%), Positives = 47/137 (34%), Gaps = 8/137 (5%)
Query: 115 GSSKIQARMEQ--QPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDD 172
G +K AR ++ + R +T P P P P P P PP GP P +
Sbjct: 303 GGAKEAARQDEGARLLRRTETLLPGPRPCPSPLPPPPAPPKGPPAPPAATPAGVYTVFRE 362
Query: 173 IKRELRAE----VDIIEQMSSSSG--SSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSH 226
RE R V +E G +S + + + ++ G P SP
Sbjct: 363 QGREHRVVAPTFVPSVEAFDERPGPIQIASQARDARAREREAGRPGVLQAPPGSPRPLDR 422
Query: 227 QQPYNSRPAVANGTSRP 243
+ + +V RP
Sbjct: 423 PEGLREKNSVIRSLKRP 439
Score = 30.4 bits (67), Expect = 1.7
Identities = 20/80 (25%), Positives = 35/80 (43%)
Query: 188 SSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGTSRPQGSN 247
+SS +S + S SSS S SSSS + +S S +S + ++ +S S+
Sbjct: 2605 ASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2664
Query: 248 QLMNTLRNDLQLSESGSDSD 267
++ + S SD +
Sbjct: 2665 SSSSSSSTTDEDSSCSSDDE 2684
Score = 30.0 bits (66), Expect = 2.2
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 126 QPTRPPQTSQPPPPPPPMPFRAPTKPPVGPKTSP----LKDNPSPEP 168
+P+ P + + PP P +AP P P+ SP P+PEP
Sbjct: 2365 EPSSTPGSKKSPPEPVDKRAKAPKARPAPPQPSPAPPAFTSCPAPEP 2411
Score = 30.0 bits (66), Expect = 2.2
Identities = 20/81 (24%), Positives = 36/81 (44%)
Query: 188 SSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGTSRPQGSN 247
++SS ++S S SSS S SSSS + +S S +S + ++ +S S+
Sbjct: 2604 AASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2663
Query: 248 QLMNTLRNDLQLSESGSDSDD 268
++ + S S D+
Sbjct: 2664 SSSSSSSSTTDEDSSCSSDDE 2684
Score = 29.3 bits (64), Expect = 3.8
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 40/123 (32%)
Query: 96 EYVLEKLSSSIQVKKTRAEGSSKIQARMEQQPTRPPQTSQPP------------------ 137
E V+EK ++++K E S QA P R P + PP
Sbjct: 1053 ENVVEK--KDLELEK---EAPSPFQALFSDIPPRYPFQALPPHYGRPYPFLLQPTAAADA 1107
Query: 138 ---PPPPPMPFRAPTKPPVGPK-----------TSPLKDNPSPEPQLDDIKRELRAEVDI 183
P P+P P + + P+ T PL++ P EP + RE++AEV+
Sbjct: 1108 DGLAPDVPLPADGPERLALSPEDKPIRLSPSKITEPLREGPEEEPLAE---REVKAEVED 1164
Query: 184 IEQ 186
+++
Sbjct: 1165 MDE 1167
Score = 28.9 bits (63), Expect = 4.9
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 104 SSIQVKKTRAEGSSKIQARMEQQPTRPPQTSQPPPPP--PPMPFRAPTKPPVGPKTSPLK 161
+++ K T+ G ++ A + T PQ PPP P P P K G K+ P K
Sbjct: 2697 AALPTKATKQAGKARPSAHSPGKKTPAPQPQAPPPQPTQPLQP-----KAQAGAKSRPKK 2751
Query: 162 DNPSPEPQLDDIKRELR 178
P ++ + R
Sbjct: 2752 REGVHLPTTKELAKRQR 2768
>gi|7669528 neuregulin 2 isoform 2 [Homo sapiens]
Length = 844
Score = 44.3 bits (103), Expect = 1e-04
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 188 SSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQP-SHQQPYNSRPAVANGTSRPQGS 246
SS SSSS S S SGS SSS+ + PA+PP+P QQP PA +R + +
Sbjct: 29 SSERSSSSSSSSSESGSSSRSSSNNSSISRPAAPPEPRPQQQPQPRSPAARRAAARSRAA 88
Score = 29.6 bits (65), Expect = 2.9
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 14/91 (15%)
Query: 132 QTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDI-KRELRAEVDIIEQMSSS 190
Q PPPPP P A + GP+ +L+ + + RA D S
Sbjct: 711 QECAPPPPPRPRARGASRRTSAGPRR-------WRRSRLNGLAAQRARAARD------SL 757
Query: 191 SGSSSSDSESSSGSDDDSSSSGGEDNGPASP 221
S SS S S+S SDDD+ + G ++P
Sbjct: 758 SLSSGSGGGSASASDDDADDADGALAAESTP 788
>gi|7669532 neuregulin 2 isoform 4 [Homo sapiens]
Length = 852
Score = 44.3 bits (103), Expect = 1e-04
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 188 SSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQP-SHQQPYNSRPAVANGTSRPQGS 246
SS SSSS S S SGS SSS+ + PA+PP+P QQP PA +R + +
Sbjct: 29 SSERSSSSSSSSSESGSSSRSSSNNSSISRPAAPPEPRPQQQPQPRSPAARRAAARSRAA 88
Score = 29.6 bits (65), Expect = 2.9
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 14/91 (15%)
Query: 132 QTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDI-KRELRAEVDIIEQMSSS 190
Q PPPPP P A + GP+ +L+ + + RA D S
Sbjct: 719 QECAPPPPPRPRARGASRRTSAGPRR-------WRRSRLNGLAAQRARAARD------SL 765
Query: 191 SGSSSSDSESSSGSDDDSSSSGGEDNGPASP 221
S SS S S+S SDDD+ + G ++P
Sbjct: 766 SLSSGSGGGSASASDDDADDADGALAAESTP 796
>gi|7669530 neuregulin 2 isoform 3 [Homo sapiens]
Length = 858
Score = 44.3 bits (103), Expect = 1e-04
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 188 SSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQP-SHQQPYNSRPAVANGTSRPQGS 246
SS SSSS S S SGS SSS+ + PA+PP+P QQP PA +R + +
Sbjct: 29 SSERSSSSSSSSSESGSSSRSSSNNSSISRPAAPPEPRPQQQPQPRSPAARRAAARSRAA 88
Score = 29.6 bits (65), Expect = 2.9
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 14/91 (15%)
Query: 132 QTSQPPPPPPPMPFRAPTKPPVGPKTSPLKDNPSPEPQLDDI-KRELRAEVDIIEQMSSS 190
Q PPPPP P A + GP+ +L+ + + RA D S
Sbjct: 725 QECAPPPPPRPRARGASRRTSAGPRR-------WRRSRLNGLAAQRARAARD------SL 771
Query: 191 SGSSSSDSESSSGSDDDSSSSGGEDNGPASP 221
S SS S S+S SDDD+ + G ++P
Sbjct: 772 SLSSGSGGGSASASDDDADDADGALAAESTP 802
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.306 0.127 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,643,560
Number of Sequences: 37866
Number of extensions: 955569
Number of successful extensions: 25510
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 1086
Number of HSP's that attempted gapping in prelim test: 9091
Number of HSP's gapped (non-prelim): 9584
length of query: 268
length of database: 18,247,518
effective HSP length: 100
effective length of query: 168
effective length of database: 14,460,918
effective search space: 2429434224
effective search space used: 2429434224
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.