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Search of human proteins with 125625324
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|125625324 nuclear RNA export factor 1 isoform 2 [Homo
sapiens]
(356 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|125625324 nuclear RNA export factor 1 isoform 2 [Homo sapiens] 723 0.0
gi|15487670 nuclear RNA export factor 1 isoform 1 [Homo sapiens] 686 0.0
gi|153791282 nuclear RNA export factor 2B [Homo sapiens] 363 e-100
gi|14277694 nuclear RNA export factor 2 [Homo sapiens] 363 e-100
gi|13430854 nuclear RNA export factor 2 [Homo sapiens] 363 e-100
gi|254039592 nuclear RNA export factor 5 [Homo sapiens] 302 3e-82
gi|11545757 nuclear RNA export factor 3 [Homo sapiens] 231 6e-61
gi|5454088 acidic (leucine-rich) nuclear phosphoprotein 32 famil... 43 5e-04
gi|11321571 slit homolog 3 [Homo sapiens] 40 0.003
gi|153791330 leucine rich repeat neuronal 1 [Homo sapiens] 39 0.009
gi|239756368 PREDICTED: similar to acidic (leucine-rich) nuclear... 37 0.027
gi|239750893 PREDICTED: similar to acidic (leucine-rich) nuclear... 37 0.027
gi|239745256 PREDICTED: similar to hCG1791241 [Homo sapiens] 37 0.027
gi|24308207 leucine rich repeat containing 47 [Homo sapiens] 37 0.035
gi|5453880 acidic (leucine-rich) nuclear phosphoprotein 32 famil... 36 0.046
gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 fami... 36 0.060
gi|92087055 PERQ amino acid rich, with GYF domain 1 [Homo sapiens] 35 0.10
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 35 0.10
gi|41406097 dishevelled 3 [Homo sapiens] 34 0.18
gi|16904383 leucine rich repeat containing 7 [Homo sapiens] 34 0.18
gi|194239701 tubulin folding cofactor E-like [Homo sapiens] 34 0.18
gi|194239699 tubulin folding cofactor E-like [Homo sapiens] 34 0.18
gi|153791507 leucine rich repeat neuronal 3 [Homo sapiens] 34 0.18
gi|153792651 leucine rich repeat neuronal 3 [Homo sapiens] 34 0.18
gi|153792227 leucine rich repeat neuronal 3 [Homo sapiens] 34 0.18
gi|4503743 flightless I homolog [Homo sapiens] 34 0.23
gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32 fam... 34 0.23
gi|157694513 leucine-rich repeat-containing G protein-coupled re... 34 0.23
gi|21071028 acidic nuclear phosphoprotein 32D [Homo sapiens] 34 0.23
gi|20302168 toll-like receptor 8 [Homo sapiens] 33 0.30
>gi|125625324 nuclear RNA export factor 1 isoform 2 [Homo sapiens]
Length = 356
Score = 723 bits (1866), Expect = 0.0
Identities = 356/356 (100%), Positives = 356/356 (100%)
Query: 1 MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVA 60
MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVA
Sbjct: 1 MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVA 60
Query: 61 MSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWF 120
MSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWF
Sbjct: 61 MSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWF 120
Query: 121 KITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKIL 180
KITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKIL
Sbjct: 121 KITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKIL 180
Query: 181 DRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVA 240
DRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVA
Sbjct: 181 DRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVA 240
Query: 241 QNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 300
QNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG
Sbjct: 241 QNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 300
Query: 301 NELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIRSVVACVSPPGDLHPLGG 356
NELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIRSVVACVSPPGDLHPLGG
Sbjct: 301 NELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIRSVVACVSPPGDLHPLGG 356
>gi|15487670 nuclear RNA export factor 1 isoform 1 [Homo sapiens]
Length = 619
Score = 686 bits (1770), Expect = 0.0
Identities = 338/341 (99%), Positives = 340/341 (99%)
Query: 1 MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVA 60
MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVA
Sbjct: 1 MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVA 60
Query: 61 MSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWF 120
MSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWF
Sbjct: 61 MSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWF 120
Query: 121 KITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKIL 180
KITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKIL
Sbjct: 121 KITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKIL 180
Query: 181 DRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVA 240
DRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVA
Sbjct: 181 DRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVA 240
Query: 241 QNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 300
QNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG
Sbjct: 241 QNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 300
Query: 301 NELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIRSV 341
NELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYI ++
Sbjct: 301 NELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 341
>gi|153791282 nuclear RNA export factor 2B [Homo sapiens]
Length = 626
Score = 363 bits (932), Expect = e-100
Identities = 180/325 (55%), Positives = 233/325 (71%), Gaps = 1/325 (0%)
Query: 20 QRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRP 79
Q +KKG FR + + + GG S +E+DG V M D ++R+ PY+ R
Sbjct: 26 QGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQENDGSVEMRDVHKDQQLRHTPYSIRC 85
Query: 80 NRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWFKITIPYGRKYDKAWLLSMI 139
RR WH D I +T R+R PPER + +QDG ++NWFK+TIPYG KYDKAWL++ I
Sbjct: 86 ERRMK-WHSEDEIRITTWRNRKPPERKMSQNTQDGYTRNWFKVTIPYGIKYDKAWLMNSI 144
Query: 140 QSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHT 199
QS CS FTP++FHY RA FFV+DAS ASALK V+YKI D EN++I I +N S P++
Sbjct: 145 QSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDVSYKIYDDENQKICIFVNHSTAPYS 204
Query: 200 ILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRI 259
+ N+LKP Q+E LKL M+KRY+ SQQALDL+ LR DPDL+ ++ID++LNRR+CMAATL+I
Sbjct: 205 VKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAATLKI 264
Query: 260 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 319
IE N PELLSLNL NN+LY+LD +S I +KAP +K LNLS N+L+S EL K+KGLKLEE
Sbjct: 265 IERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEE 324
Query: 320 LWLDGNSLCDTFRDQSTYIRSVVAC 344
LWL+GN LC TF DQS Y+ ++ C
Sbjct: 325 LWLEGNPLCSTFSDQSAYVSAIRDC 349
>gi|14277694 nuclear RNA export factor 2 [Homo sapiens]
Length = 626
Score = 363 bits (932), Expect = e-100
Identities = 180/325 (55%), Positives = 233/325 (71%), Gaps = 1/325 (0%)
Query: 20 QRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRP 79
Q +KKG FR + + + GG S +E+DG V M D ++R+ PY+ R
Sbjct: 26 QGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQENDGSVEMRDVHKDQQLRHTPYSIRC 85
Query: 80 NRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWFKITIPYGRKYDKAWLLSMI 139
RR WH D I +T R+R PPER + +QDG ++NWFK+TIPYG KYDKAWL++ I
Sbjct: 86 ERRMK-WHSEDEIRITTWRNRKPPERKMSQNTQDGYTRNWFKVTIPYGIKYDKAWLMNSI 144
Query: 140 QSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHT 199
QS CS FTP++FHY RA FFV+DAS ASALK V+YKI D EN++I I +N S P++
Sbjct: 145 QSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDVSYKIYDDENQKICIFVNHSTAPYS 204
Query: 200 ILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRI 259
+ N+LKP Q+E LKL M+KRY+ SQQALDL+ LR DPDL+ ++ID++LNRR+CMAATL+I
Sbjct: 205 VKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAATLKI 264
Query: 260 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 319
IE N PELLSLNL NN+LY+LD +S I +KAP +K LNLS N+L+S EL K+KGLKLEE
Sbjct: 265 IERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEE 324
Query: 320 LWLDGNSLCDTFRDQSTYIRSVVAC 344
LWL+GN LC TF DQS Y+ ++ C
Sbjct: 325 LWLEGNPLCSTFSDQSAYVSAIRDC 349
>gi|13430854 nuclear RNA export factor 2 [Homo sapiens]
Length = 626
Score = 363 bits (932), Expect = e-100
Identities = 180/325 (55%), Positives = 233/325 (71%), Gaps = 1/325 (0%)
Query: 20 QRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRP 79
Q +KKG FR + + + GG S +E+DG V M D ++R+ PY+ R
Sbjct: 26 QGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQENDGSVEMRDVHKDQQLRHTPYSIRC 85
Query: 80 NRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWFKITIPYGRKYDKAWLLSMI 139
RR WH D I +T R+R PPER + +QDG ++NWFK+TIPYG KYDKAWL++ I
Sbjct: 86 ERRMK-WHSEDEIRITTWRNRKPPERKMSQNTQDGYTRNWFKVTIPYGIKYDKAWLMNSI 144
Query: 140 QSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHT 199
QS CS FTP++FHY RA FFV+DAS ASALK V+YKI D EN++I I +N S P++
Sbjct: 145 QSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDVSYKIYDDENQKICIFVNHSTAPYS 204
Query: 200 ILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRI 259
+ N+LKP Q+E LKL M+KRY+ SQQALDL+ LR DPDL+ ++ID++LNRR+CMAATL+I
Sbjct: 205 VKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAATLKI 264
Query: 260 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 319
IE N PELLSLNL NN+LY+LD +S I +KAP +K LNLS N+L+S EL K+KGLKLEE
Sbjct: 265 IERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEE 324
Query: 320 LWLDGNSLCDTFRDQSTYIRSVVAC 344
LWL+GN LC TF DQS Y+ ++ C
Sbjct: 325 LWLEGNPLCSTFSDQSAYVSAIRDC 349
>gi|254039592 nuclear RNA export factor 5 [Homo sapiens]
Length = 365
Score = 302 bits (773), Expect = 3e-82
Identities = 144/234 (61%), Positives = 184/234 (78%)
Query: 111 SQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTAS 170
+QD + WFK+TIPYG KYDKAWL++ IQS CSVPFTP++FHY RA FFV+ AS AS
Sbjct: 5 TQDENMRKWFKVTIPYGIKYDKAWLMNSIQSNCSVPFTPVDFHYIRNRACFFVQVASAAS 64
Query: 171 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLK 230
ALK V+YKI D EN++I I ++ P+++ N+LKP Q+E LKL M+KRY+ SQQALDL+
Sbjct: 65 ALKDVSYKIYDDENQKICIFVSHFTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQ 124
Query: 231 GLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKA 290
LR DPDL+ ++ID++LNRR+CMAATL+I E N PELLSLNL NN+LY+LD +S I +KA
Sbjct: 125 NLRFDPDLMGRDIDIILNRRNCMAATLKITERNFPELLSLNLCNNKLYQLDGLSDITEKA 184
Query: 291 PNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIRSVVAC 344
P +K LNLS N+L+S EL K+KGLKLEELWL+GN LC TF DQS Y+ ++ C
Sbjct: 185 PKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDC 238
>gi|11545757 nuclear RNA export factor 3 [Homo sapiens]
Length = 531
Score = 231 bits (590), Expect = 6e-61
Identities = 126/304 (41%), Positives = 177/304 (58%), Gaps = 36/304 (11%)
Query: 39 RSGRGGSGIRSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRR 98
RS G+ SS ++ DGD AM A VRY PYT P R ++ +D+ HV + R
Sbjct: 33 RSEPVNPGMHSSSHQQQDGDAAMHGAHMDSPVRYTPYTISPYNRKGSFRKQDQTHVNMER 92
Query: 99 DRAPPERGGAGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTR 158
++ PPER G DGT +WFKIT+P+G KY++ WLL++IQ++CSVPF P+EFHYEN
Sbjct: 93 EQKPPERRMEGNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQNECSVPFVPVEFHYENMH 152
Query: 159 AQFFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSK 218
A FFVE+AS A ALK V+ KI D +N +ISI +N + PH + ELK E+VEQ+KL M++
Sbjct: 153 ASFFVENASIAYALKNVSGKIWDEDNEKISIFVNPAGIPHFVHRELKSEKVEQIKLAMNQ 212
Query: 219 RYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLY 278
+ D SQ+ALD++ L PD+V ++ + N R CMAA+L + EENIP ++S
Sbjct: 213 QCDVSQEALDIQRLPFYPDMVNRDTKMASNPRKCMAASLDVHEENIPTVMSAG------- 265
Query: 279 RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 338
E+DK KG++ E D + +C TF D S+ I
Sbjct: 266 -----------------------------EMDKWKGIEPGEKCADRSPVCTTFSDTSSNI 296
Query: 339 RSVV 342
S++
Sbjct: 297 NSIL 300
>gi|5454088 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member B [Homo sapiens]
Length = 251
Score = 42.7 bits (99), Expect = 5e-04
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 264 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK 316
+P+L L LS NR++ DM + +K PNL LNLSGN+LK L+ +K L+
Sbjct: 63 LPKLKKLELSENRIFGGLDM--LAEKLPNLTHLNLSGNKLKDISTLEPLKKLE 113
>gi|11321571 slit homolog 3 [Homo sapiens]
Length = 1523
Score = 40.0 bits (92), Expect = 0.003
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 252 CMAATLRIIEENIPELLS-LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD 310
C L I ++PE ++ L L++N + L+ + I +K PNL+ +NLS N++K RE
Sbjct: 518 CSNQKLVRIPSHLPEYVTDLRLNDNEVSVLE-ATGIFKKLPNLRKINLSNNKIKEVREGA 576
Query: 311 KIKGLKLEELWLDGNSL 327
++EL L GN L
Sbjct: 577 FDGAASVQELMLTGNQL 593
>gi|153791330 leucine rich repeat neuronal 1 [Homo sapiens]
Length = 716
Score = 38.5 bits (88), Expect = 0.009
Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 211 QLKLIMSKRYDGSQQALDLKGLRSDP--DLVAQNIDVVLNRRSCMAATLRIIE------E 262
+LK+I S+ +D + L++ + +P ++ N + N RS + A + + +
Sbjct: 178 KLKVIDSRWFDSTPN-LEILMIGENPVIGILDMNFKPLANLRSLVLAGMYLTDIPGNALV 236
Query: 263 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 322
+ L SL+ +N+L ++ ++ +QK PNLK L+L+ N + +E D L+L+EL +
Sbjct: 237 GLDSLESLSFYDNKLVKVPQLA--LQKVPNLKFLDLNKNPIHKIQEGDFKNMLRLKELGI 294
Query: 323 D 323
+
Sbjct: 295 N 295
>gi|239756368 PREDICTED: similar to acidic (leucine-rich) nuclear
phosphoprotein 32 family, member B [Homo sapiens]
Length = 272
Score = 37.0 bits (84), Expect = 0.027
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 264 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK 316
+P+L LS NR++ +MS+ +K PNL LNLSG +LK L+ +K L+
Sbjct: 83 LPKLKKFVLSENRIFGGLNMSA--EKLPNLTHLNLSGKKLKDISTLEPLKKLE 133
>gi|239750893 PREDICTED: similar to acidic (leucine-rich) nuclear
phosphoprotein 32 family, member B [Homo sapiens]
Length = 272
Score = 37.0 bits (84), Expect = 0.027
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 264 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK 316
+P+L LS NR++ +MS+ +K PNL LNLSG +LK L+ +K L+
Sbjct: 83 LPKLKKFVLSENRIFGGLNMSA--EKLPNLTHLNLSGKKLKDISTLEPLKKLE 133
>gi|239745256 PREDICTED: similar to hCG1791241 [Homo sapiens]
Length = 450
Score = 37.0 bits (84), Expect = 0.027
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 264 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK 316
+P+L LS NR++ +MS+ +K PNL LNLSG +LK L+ +K L+
Sbjct: 83 LPKLKKFVLSENRIFGGLNMSA--EKLPNLTHLNLSGKKLKDISTLEPLKKLE 133
>gi|24308207 leucine rich repeat containing 47 [Homo sapiens]
Length = 583
Score = 36.6 bits (83), Expect = 0.035
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 264 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 305
+P+L SLNLS NRL L + + + AP L+ LNL+GN L S
Sbjct: 128 LPQLQSLNLSGNRLRELP--ADLARCAPRLQSLNLTGNCLDS 167
Score = 30.4 bits (67), Expect = 2.5
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 263 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEEL 320
++ L +L+LSNN+L ++ + + P LK +N GN+L+ +R + G + +
Sbjct: 200 HLASLKTLDLSNNQL---SEIPAELADCPKLKEINFRGNKLRDKRLEKMVSGCQTRSI 254
>gi|5453880 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member A [Homo sapiens]
Length = 249
Score = 36.2 bits (82), Expect = 0.046
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 263 NIPEL---LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 319
N+P+L L LS+NR+ + + +K PNL LNLSGN++K ++ +K KLE
Sbjct: 59 NLPKLNKLKKLELSDNRVS--GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLK--KLEN 114
Query: 320 L 320
L
Sbjct: 115 L 115
Score = 32.0 bits (71), Expect = 0.87
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 25/146 (17%)
Query: 198 HTILNELKPEQVEQLKLIMSKRYDGSQQALDLK------------GLRSDPDLVAQN--- 242
H L P V++L L S+ +G + L + GL S +L N
Sbjct: 8 HLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLK 67
Query: 243 -IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSI--VQKAPNLKILNLS 299
+++ NR ++ L ++ E P L LNLS N ++ D+S+I ++K NLK L+L
Sbjct: 68 KLELSDNR---VSGGLEVLAEKCPNLTHLNLSGN---KIKDLSTIEPLKKLENLKSLDLF 121
Query: 300 GNELKSEREL-DKIKGLKLEELWLDG 324
E+ + + + + L + +LDG
Sbjct: 122 NCEVTNLNDYRENVFKLLPQLTYLDG 147
>gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member E isoform 1 [Homo sapiens]
Length = 268
Score = 35.8 bits (81), Expect = 0.060
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 20/93 (21%)
Query: 244 DVVLNRRSCMAATLRIIEENIPELLSLNLSN------------NRLYRLDDMSSIV---- 287
++VL+ C+ + + + EL L+++N N+L +L+ +I+
Sbjct: 21 ELVLDNCLCVNGEIEGLNDTFKELEFLSMANVELSSLARLPSLNKLRKLELSDNIISGGL 80
Query: 288 ----QKAPNLKILNLSGNELKSERELDKIKGLK 316
+K PNL LNLSGN++K ++ ++ LK
Sbjct: 81 EVLAEKCPNLTYLNLSGNKIKDLSTVEALQNLK 113
>gi|92087055 PERQ amino acid rich, with GYF domain 1 [Homo sapiens]
Length = 1035
Score = 35.0 bits (79), Expect = 0.10
Identities = 37/125 (29%), Positives = 49/125 (39%), Gaps = 26/125 (20%)
Query: 24 KGRGP--FRWKYGEGNRRS---GRGGSGIRSSRLEEDDGDVAMSDAQDGPRVRYNPYTTR 78
KG GP G G+ RS GRG S +EE DG S R
Sbjct: 105 KGAGPPLAGTSRGRGSTRSRGRGRGDSCFYQRSIEEGDGAFGRS--------------PR 150
Query: 79 PNRRGDTWHDRD--RIHVTVRRD--RAPPERGGAGTSQD---GTSKNWFKITIPYGRKYD 131
+R +W DR R + RRD R E GGAG ++ S+NW + + +
Sbjct: 151 EIQRSQSWDDRGERRFEKSARRDGARCGFEEGGAGPRKEHARSDSENWRSLREEQEEEEE 210
Query: 132 KAWLL 136
+W L
Sbjct: 211 GSWRL 215
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 35.0 bits (79), Expect = 0.10
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 262 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK 316
EN+ L LNL+ N + + + +K +L++LNL GN++ S +++ K+K L+
Sbjct: 166 ENMCNLQKLNLAGNEIEHIPVW--LGKKLKSLRVLNLKGNKISSLQDISKLKPLQ 218
Score = 29.6 bits (65), Expect = 4.3
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 16/70 (22%)
Query: 262 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-----------LKSERELD 310
+ + +L LNLS N++ +++ + ++ NL+ LNL+GNE LKS R L+
Sbjct: 144 DKLLKLRELNLSYNKISKIEGIENMC----NLQKLNLAGNEIEHIPVWLGKKLKSLRVLN 199
Query: 311 KIKGLKLEEL 320
+KG K+ L
Sbjct: 200 -LKGNKISSL 208
Score = 29.3 bits (64), Expect = 5.6
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 11/72 (15%)
Query: 261 EENIPELLSLNLS-----NNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL 315
++N+ + SLNLS + ++++ +K L++LNLS N + +LDK+ L
Sbjct: 94 QDNLALIKSLNLSLSKDGGKKFKYIENL----EKCVKLEVLNLSYNLIGKIEKLDKL--L 147
Query: 316 KLEELWLDGNSL 327
KL EL L N +
Sbjct: 148 KLRELNLSYNKI 159
>gi|41406097 dishevelled 3 [Homo sapiens]
Length = 716
Score = 34.3 bits (77), Expect = 0.18
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 17/88 (19%)
Query: 25 GRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGD 84
G G ++ EG+R SG SG S R +E D D++ G + +TTR + RG
Sbjct: 561 GGGSASSQHSEGSRSSGSNRSG--SDRRKEKDPKAG--DSKSGGSGSESDHTTRSSLRGP 616
Query: 85 TWHDRDRIHVTVRRDRAPPERGGAGTSQ 112
R+RAP ER G S+
Sbjct: 617 -------------RERAPSERSGPAASE 631
>gi|16904383 leucine rich repeat containing 7 [Homo sapiens]
Length = 1537
Score = 34.3 bits (77), Expect = 0.18
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 255 ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIK 313
A L + N L+ L + R L + + K L+ L+L NE E LD+I+
Sbjct: 148 AFLEFLPANFGRLVKLRILELRENHLKTLPKSMHKLAQLERLDLGNNEFGELPEVLDQIQ 207
Query: 314 GLKLEELWLDGNSL 327
L+ ELW+D N+L
Sbjct: 208 NLR--ELWMDNNAL 219
>gi|194239701 tubulin folding cofactor E-like [Homo sapiens]
Length = 424
Score = 34.3 bits (77), Expect = 0.18
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 265 PELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWL 322
P L +L L+NN L +++ S+ + PNL+ ++L + L+S ++DK+ KLEE+ L
Sbjct: 200 PSLDTLVLANNHLNAIEEPDDSLARLFPNLRSISLHKSGLQSWEDIDKLNSFPKLEEVRL 259
Query: 323 DGNSLCDTF 331
G L +
Sbjct: 260 LGIPLLQPY 268
Score = 33.1 bits (74), Expect = 0.39
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 242 NIDVVLNRRSC---MAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL 298
N+ VL SC A + I + L+LS+N+L ++S IV P L+ LNL
Sbjct: 48 NLPSVLVLNSCGITCAGDEKEIAAFCAHVSELDLSDNKLEDWHEVSKIVSNVPQLEFLNL 107
Query: 299 SGNEL 303
S N L
Sbjct: 108 SSNPL 112
>gi|194239699 tubulin folding cofactor E-like [Homo sapiens]
Length = 424
Score = 34.3 bits (77), Expect = 0.18
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 265 PELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWL 322
P L +L L+NN L +++ S+ + PNL+ ++L + L+S ++DK+ KLEE+ L
Sbjct: 200 PSLDTLVLANNHLNAIEEPDDSLARLFPNLRSISLHKSGLQSWEDIDKLNSFPKLEEVRL 259
Query: 323 DGNSLCDTF 331
G L +
Sbjct: 260 LGIPLLQPY 268
Score = 33.1 bits (74), Expect = 0.39
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 242 NIDVVLNRRSC---MAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL 298
N+ VL SC A + I + L+LS+N+L ++S IV P L+ LNL
Sbjct: 48 NLPSVLVLNSCGITCAGDEKEIAAFCAHVSELDLSDNKLEDWHEVSKIVSNVPQLEFLNL 107
Query: 299 SGNEL 303
S N L
Sbjct: 108 SSNPL 112
>gi|153791507 leucine rich repeat neuronal 3 [Homo sapiens]
Length = 708
Score = 34.3 bits (77), Expect = 0.18
Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 11/121 (9%)
Query: 211 QLKLIMSKRYDGSQQALDLKGLRSDPDLVAQ--NIDVVLNRRSCMAATLRIIE------E 262
+L++I SK +D L++ + +P + + N ++N RS + A + + E
Sbjct: 175 RLQMINSKWFDALPN-LEILMIGENPIIRIKDMNFKPLINLRSLVIAGINLTEIPDNALV 233
Query: 263 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 322
+ L S++ +NRL ++ ++ +QK NLK L+L+ N + R D L L+EL +
Sbjct: 234 GLENLESISFYDNRLIKVPHVA--LQKVVNLKFLDLNKNPINRIRRGDFSNMLHLKELGI 291
Query: 323 D 323
+
Sbjct: 292 N 292
>gi|153792651 leucine rich repeat neuronal 3 [Homo sapiens]
Length = 708
Score = 34.3 bits (77), Expect = 0.18
Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 11/121 (9%)
Query: 211 QLKLIMSKRYDGSQQALDLKGLRSDPDLVAQ--NIDVVLNRRSCMAATLRIIE------E 262
+L++I SK +D L++ + +P + + N ++N RS + A + + E
Sbjct: 175 RLQMINSKWFDALPN-LEILMIGENPIIRIKDMNFKPLINLRSLVIAGINLTEIPDNALV 233
Query: 263 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 322
+ L S++ +NRL ++ ++ +QK NLK L+L+ N + R D L L+EL +
Sbjct: 234 GLENLESISFYDNRLIKVPHVA--LQKVVNLKFLDLNKNPINRIRRGDFSNMLHLKELGI 291
Query: 323 D 323
+
Sbjct: 292 N 292
>gi|153792227 leucine rich repeat neuronal 3 [Homo sapiens]
Length = 708
Score = 34.3 bits (77), Expect = 0.18
Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 11/121 (9%)
Query: 211 QLKLIMSKRYDGSQQALDLKGLRSDPDLVAQ--NIDVVLNRRSCMAATLRIIE------E 262
+L++I SK +D L++ + +P + + N ++N RS + A + + E
Sbjct: 175 RLQMINSKWFDALPN-LEILMIGENPIIRIKDMNFKPLINLRSLVIAGINLTEIPDNALV 233
Query: 263 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 322
+ L S++ +NRL ++ ++ +QK NLK L+L+ N + R D L L+EL +
Sbjct: 234 GLENLESISFYDNRLIKVPHVA--LQKVVNLKFLDLNKNPINRIRRGDFSNMLHLKELGI 291
Query: 323 D 323
+
Sbjct: 292 N 292
>gi|4503743 flightless I homolog [Homo sapiens]
Length = 1269
Score = 33.9 bits (76), Expect = 0.23
Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 15/141 (10%)
Query: 188 SIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVL 247
++++N + H L +L Q + S + S L+GL + D +D+
Sbjct: 178 TLVLNGNPLLHAQLRQLPAMTALQTLHLRSTQRTQSNLPTSLEGLSNLAD-----VDLSC 232
Query: 248 NRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E 306
N + + L +P L LNLS+N++ ++S + + +++ LNLS N+L S
Sbjct: 233 NDLTRVPECLY----TLPSLRRLNLSSNQI---TELSLCIDQWVHVETLNLSRNQLTSLP 285
Query: 307 RELDKIKGLKLEELWLDGNSL 327
+ K+ KL++L+L+ N L
Sbjct: 286 SAICKLS--KLKKLYLNSNKL 304
>gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32
family, member E isoform 3 [Homo sapiens]
Length = 220
Score = 33.9 bits (76), Expect = 0.23
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 263 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK 316
++ +L L LS+N + + + +K PNL LNLSGN++K ++ ++ LK
Sbjct: 14 SLNKLRKLELSDNIIS--GGLEVLAEKCPNLTYLNLSGNKIKDLSTVEALQNLK 65
Score = 31.6 bits (70), Expect = 1.1
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 257 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGL 315
L ++ E P L LNLS N++ L + ++ Q NLK L+L E+ + E + I L
Sbjct: 32 LEVLAEKCPNLTYLNLSGNKIKDLSTVEAL-QNLKNLKSLDLFNCEITNLEDYRESIFEL 90
Query: 316 KLEELWLDG 324
+ +LDG
Sbjct: 91 LQQITYLDG 99
>gi|157694513 leucine-rich repeat-containing G protein-coupled
receptor 4 [Homo sapiens]
Length = 951
Score = 33.9 bits (76), Expect = 0.23
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 264 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWL 322
+ EL L L NN+L + S ++ L+ L L N + S E D +GL +L LWL
Sbjct: 104 LKELKVLTLQNNQLKTVP--SEAIRGLSALQSLRLDANHITSVPE-DSFEGLVQLRHLWL 160
Query: 323 DGNSLCD 329
D NSL +
Sbjct: 161 DDNSLTE 167
>gi|21071028 acidic nuclear phosphoprotein 32D [Homo sapiens]
Length = 131
Score = 33.9 bits (76), Expect = 0.23
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 263 NIPEL---LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 319
N+P+L L LS+NR + + +K PNL LNLSGN++K ++ +K KLE
Sbjct: 59 NLPKLNKLKKLELSSNRASV--GLEVLAEKCPNLIHLNLSGNKIKDLSTIEPLK--KLEN 114
Query: 320 L 320
L
Sbjct: 115 L 115
Score = 31.2 bits (69), Expect = 1.5
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 24/119 (20%)
Query: 198 HTILNELKPEQVEQLKLIMSKRYDGSQQALDLK------------GLRSDPDLVAQN--- 242
H L P V++L L S+ +G + L + GL S +L N
Sbjct: 8 HLELRNRTPSDVKELFLDNSQSNEGKLEGLTDEFEELELLNTINIGLTSIANLPKLNKLK 67
Query: 243 -IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSI--VQKAPNLKILNL 298
+++ NR S L ++ E P L+ LNLS N ++ D+S+I ++K NL+ L+L
Sbjct: 68 KLELSSNRAS---VGLEVLAEKCPNLIHLNLSGN---KIKDLSTIEPLKKLENLESLDL 120
>gi|20302168 toll-like receptor 8 [Homo sapiens]
Length = 1041
Score = 33.5 bits (75), Expect = 0.30
Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 5/139 (3%)
Query: 206 PEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIP 265
P Q E L I + A L G + +D+ NR A+ + E +
Sbjct: 498 PNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASA-LTELSDL 556
Query: 266 ELLSLNLSNNRLYRLDDMS---SIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 322
E+L L+ N+ +R+ ++ +Q NLK+LNLS N + + + ++ L EL
Sbjct: 557 EVLDLSY-NSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVF 615
Query: 323 DGNSLCDTFRDQSTYIRSV 341
GN L + D S+
Sbjct: 616 SGNRLDILWNDDDNRYISI 634
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,652,472
Number of Sequences: 37866
Number of extensions: 666322
Number of successful extensions: 2185
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 2066
Number of HSP's gapped (non-prelim): 179
length of query: 356
length of database: 18,247,518
effective HSP length: 103
effective length of query: 253
effective length of database: 14,347,320
effective search space: 3629871960
effective search space used: 3629871960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.