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Search of human proteins with 12545402
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|12545402 intercellular adhesion molecule 4 isoform 2
precursor [Homo sapiens]
(237 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|12545402 intercellular adhesion molecule 4 isoform 2 precurso... 486 e-138
gi|4504561 intercellular adhesion molecule 4 isoform 1 precursor... 478 e-135
gi|85068578 intercellular adhesion molecule 4 isoform 3 precurso... 274 6e-74
gi|189571583 intercellular adhesion molecule 5 precursor [Homo s... 90 1e-18
gi|153082722 intercellular adhesion molecule 2 precursor [Homo s... 78 8e-15
gi|153082719 intercellular adhesion molecule 2 precursor [Homo s... 78 8e-15
gi|153082699 intercellular adhesion molecule 2 precursor [Homo s... 78 8e-15
gi|153082686 intercellular adhesion molecule 2 precursor [Homo s... 78 8e-15
gi|153082696 intercellular adhesion molecule 2 precursor [Homo s... 78 8e-15
gi|167466207 intercellular adhesion molecule 3 precursor [Homo s... 73 2e-13
gi|167466198 intercellular adhesion molecule 1 precursor [Homo s... 54 1e-07
gi|4507875 vascular cell adhesion molecule 1 isoform a precursor... 52 6e-07
gi|18201909 vascular cell adhesion molecule 1 isoform b precurso... 45 7e-05
gi|25121980 dispatched B [Homo sapiens] 37 0.015
gi|239757369 PREDICTED: hypothetical protein [Homo sapiens] 35 0.043
gi|239751917 PREDICTED: hypothetical protein [Homo sapiens] 35 0.043
gi|239746407 PREDICTED: hypothetical protein XP_002343705 [Homo ... 35 0.043
gi|19923084 polycystin-1L1 [Homo sapiens] 33 0.16
gi|153281158 dual specificity phosphatase 8 [Homo sapiens] 32 0.37
gi|38787970 tensin like C1 domain containing phosphatase isoform... 31 0.82
gi|38787957 tensin like C1 domain containing phosphatase isoform... 31 0.82
gi|38787941 tensin like C1 domain containing phosphatase isoform... 31 0.82
gi|109633022 mucosal vascular addressin cell adhesion molecule 1... 30 1.8
gi|18780285 mucosal vascular addressin cell adhesion molecule 1 ... 30 1.8
gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precurs... 30 2.4
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 30 2.4
gi|14277685 protocadherin gamma subfamily C, 5 isoform 2 precurs... 29 3.1
gi|157311649 neogenin homolog 1 [Homo sapiens] 29 3.1
gi|4758822 nephrin precursor [Homo sapiens] 29 4.1
gi|205360962 polycystin 1 isoform 2 precursor [Homo sapiens] 29 4.1
>gi|12545402 intercellular adhesion molecule 4 isoform 2 precursor
[Homo sapiens]
Length = 237
Score = 486 bits (1250), Expect = e-138
Identities = 237/237 (100%), Positives = 237/237 (100%)
Query: 1 MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ 60
MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ
Sbjct: 1 MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ 60
Query: 61 PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK 120
PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK
Sbjct: 61 PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK 120
Query: 121 TRWATSRITAYKPPHSVILEPPVLKGRKYTLRCHVTQVFPVGYLVVTLRHGSRVIYSESL 180
TRWATSRITAYKPPHSVILEPPVLKGRKYTLRCHVTQVFPVGYLVVTLRHGSRVIYSESL
Sbjct: 121 TRWATSRITAYKPPHSVILEPPVLKGRKYTLRCHVTQVFPVGYLVVTLRHGSRVIYSESL 180
Query: 181 ERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNLDGLVVRNSSAPITLMLGEAPL 237
ERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNLDGLVVRNSSAPITLMLGEAPL
Sbjct: 181 ERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNLDGLVVRNSSAPITLMLGEAPL 237
>gi|4504561 intercellular adhesion molecule 4 isoform 1 precursor
[Homo sapiens]
Length = 271
Score = 478 bits (1229), Expect = e-135
Identities = 233/236 (98%), Positives = 234/236 (99%)
Query: 1 MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ 60
MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ
Sbjct: 1 MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ 60
Query: 61 PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK 120
PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK
Sbjct: 61 PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK 120
Query: 121 TRWATSRITAYKPPHSVILEPPVLKGRKYTLRCHVTQVFPVGYLVVTLRHGSRVIYSESL 180
TRWATSRITAYKPPHSVILEPPVLKGRKYTLRCHVTQVFPVGYLVVTLRHGSRVIYSESL
Sbjct: 121 TRWATSRITAYKPPHSVILEPPVLKGRKYTLRCHVTQVFPVGYLVVTLRHGSRVIYSESL 180
Query: 181 ERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNLDGLVVRNSSAPITLMLGEAP 236
ERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNLDGLVVRNSSAPITLML +P
Sbjct: 181 ERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNLDGLVVRNSSAPITLMLAWSP 236
>gi|85068578 intercellular adhesion molecule 4 isoform 3 precursor
[Homo sapiens]
Length = 272
Score = 274 bits (700), Expect = 6e-74
Identities = 132/138 (95%), Positives = 134/138 (97%)
Query: 1 MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ 60
MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ
Sbjct: 1 MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ 60
Query: 61 PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK 120
PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK
Sbjct: 61 PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK 120
Query: 121 TRWATSRITAYKPPHSVI 138
TRWATSRITAY P ++
Sbjct: 121 TRWATSRITAYSVPGGLL 138
>gi|189571583 intercellular adhesion molecule 5 precursor [Homo
sapiens]
Length = 924
Score = 90.1 bits (222), Expect = 1e-18
Identities = 66/191 (34%), Positives = 88/191 (46%), Gaps = 15/191 (7%)
Query: 47 PFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRA 106
PFW + P V+ G S+ LNCS +CP+P+ L T LR+ T RG W++ QL+D+R
Sbjct: 33 PFWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIRE 92
Query: 107 WSSLAHCLVTCAGKTRWATSRITAYKPPHSVILEP-----PVLKGRKYTLRCHVTQVFPV 161
+ C CA +T A I ++ P V L P PV G +TL C V P
Sbjct: 93 PETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPV--GENFTLSCRVPGAGPR 150
Query: 162 GYLVVTLRHGSRVIYSESLERFTGLD--LANVTLTYEFAAGPRDFWQPVICHARLNL--D 217
L +TL G++ + S F G LT A D C A L+L
Sbjct: 151 ASLTLTLLRGAQELIRRS---FAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRPH 207
Query: 218 GL-VVRNSSAP 227
GL + NSSAP
Sbjct: 208 GLGLFENSSAP 218
>gi|153082722 intercellular adhesion molecule 2 precursor [Homo
sapiens]
Length = 275
Score = 77.8 bits (190), Expect = 8e-15
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 8/200 (4%)
Query: 41 PSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQ 100
P F V + P+ +AV+P S+++NCS +C QP+ L T L + W Y
Sbjct: 20 PGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLDKILLDEQAQWKHYL 79
Query: 101 LLDVRAWSSLAHCLVTCAGKTRWATSRITAYKPPHSVI--LEPP-VLKGRKYTLRCHVTQ 157
+ ++ + ++ C TC+GK S ++ Y+PP VI L+P V G+ +T+ C V
Sbjct: 80 VSNI-SHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPT 138
Query: 158 VFPVGYLVVTLRHGSRVIYSESLERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNL- 216
V P+ L + L G+ ++ E+ + T T+ A D + C A L+L
Sbjct: 139 VEPLDSLTLFLFRGNETLHYETFGKAAPAP-QEATATFNSTADREDGHRNFSCLAVLDLM 197
Query: 217 --DGLVVRNSSAPITLMLGE 234
G + SAP L + E
Sbjct: 198 SRGGNIFHKHSAPKMLEIYE 217
>gi|153082719 intercellular adhesion molecule 2 precursor [Homo
sapiens]
Length = 275
Score = 77.8 bits (190), Expect = 8e-15
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 8/200 (4%)
Query: 41 PSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQ 100
P F V + P+ +AV+P S+++NCS +C QP+ L T L + W Y
Sbjct: 20 PGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLDKILLDEQAQWKHYL 79
Query: 101 LLDVRAWSSLAHCLVTCAGKTRWATSRITAYKPPHSVI--LEPP-VLKGRKYTLRCHVTQ 157
+ ++ + ++ C TC+GK S ++ Y+PP VI L+P V G+ +T+ C V
Sbjct: 80 VSNI-SHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPT 138
Query: 158 VFPVGYLVVTLRHGSRVIYSESLERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNL- 216
V P+ L + L G+ ++ E+ + T T+ A D + C A L+L
Sbjct: 139 VEPLDSLTLFLFRGNETLHYETFGKAAPAP-QEATATFNSTADREDGHRNFSCLAVLDLM 197
Query: 217 --DGLVVRNSSAPITLMLGE 234
G + SAP L + E
Sbjct: 198 SRGGNIFHKHSAPKMLEIYE 217
>gi|153082699 intercellular adhesion molecule 2 precursor [Homo
sapiens]
Length = 275
Score = 77.8 bits (190), Expect = 8e-15
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 8/200 (4%)
Query: 41 PSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQ 100
P F V + P+ +AV+P S+++NCS +C QP+ L T L + W Y
Sbjct: 20 PGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLDKILLDEQAQWKHYL 79
Query: 101 LLDVRAWSSLAHCLVTCAGKTRWATSRITAYKPPHSVI--LEPP-VLKGRKYTLRCHVTQ 157
+ ++ + ++ C TC+GK S ++ Y+PP VI L+P V G+ +T+ C V
Sbjct: 80 VSNI-SHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPT 138
Query: 158 VFPVGYLVVTLRHGSRVIYSESLERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNL- 216
V P+ L + L G+ ++ E+ + T T+ A D + C A L+L
Sbjct: 139 VEPLDSLTLFLFRGNETLHYETFGKAAPAP-QEATATFNSTADREDGHRNFSCLAVLDLM 197
Query: 217 --DGLVVRNSSAPITLMLGE 234
G + SAP L + E
Sbjct: 198 SRGGNIFHKHSAPKMLEIYE 217
>gi|153082686 intercellular adhesion molecule 2 precursor [Homo
sapiens]
Length = 275
Score = 77.8 bits (190), Expect = 8e-15
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 8/200 (4%)
Query: 41 PSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQ 100
P F V + P+ +AV+P S+++NCS +C QP+ L T L + W Y
Sbjct: 20 PGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLDKILLDEQAQWKHYL 79
Query: 101 LLDVRAWSSLAHCLVTCAGKTRWATSRITAYKPPHSVI--LEPP-VLKGRKYTLRCHVTQ 157
+ ++ + ++ C TC+GK S ++ Y+PP VI L+P V G+ +T+ C V
Sbjct: 80 VSNI-SHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPT 138
Query: 158 VFPVGYLVVTLRHGSRVIYSESLERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNL- 216
V P+ L + L G+ ++ E+ + T T+ A D + C A L+L
Sbjct: 139 VEPLDSLTLFLFRGNETLHYETFGKAAPAP-QEATATFNSTADREDGHRNFSCLAVLDLM 197
Query: 217 --DGLVVRNSSAPITLMLGE 234
G + SAP L + E
Sbjct: 198 SRGGNIFHKHSAPKMLEIYE 217
>gi|153082696 intercellular adhesion molecule 2 precursor [Homo
sapiens]
Length = 275
Score = 77.8 bits (190), Expect = 8e-15
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 8/200 (4%)
Query: 41 PSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQ 100
P F V + P+ +AV+P S+++NCS +C QP+ L T L + W Y
Sbjct: 20 PGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLDKILLDEQAQWKHYL 79
Query: 101 LLDVRAWSSLAHCLVTCAGKTRWATSRITAYKPPHSVI--LEPP-VLKGRKYTLRCHVTQ 157
+ ++ + ++ C TC+GK S ++ Y+PP VI L+P V G+ +T+ C V
Sbjct: 80 VSNI-SHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPT 138
Query: 158 VFPVGYLVVTLRHGSRVIYSESLERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNL- 216
V P+ L + L G+ ++ E+ + T T+ A D + C A L+L
Sbjct: 139 VEPLDSLTLFLFRGNETLHYETFGKAAPAP-QEATATFNSTADREDGHRNFSCLAVLDLM 197
Query: 217 --DGLVVRNSSAPITLMLGE 234
G + SAP L + E
Sbjct: 198 SRGGNIFHKHSAPKMLEIYE 217
>gi|167466207 intercellular adhesion molecule 3 precursor [Homo
sapiens]
Length = 547
Score = 73.2 bits (178), Expect = 2e-13
Identities = 64/199 (32%), Positives = 88/199 (44%), Gaps = 21/199 (10%)
Query: 39 LAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVS 98
L P F +R+ P+ + G S+ +NCS CP + +L T L + G GW +
Sbjct: 23 LTPGVQGQEFLLRVEPQNPVLSAGGSLFVNCSTDCPSSEKIALETSLSKELVASGMGWAA 82
Query: 99 YQLLDVRAWSSLAHCLVTCAGKTRWATSRITAYKPPHSVILEP-----PVLKGRKYTLRC 153
+ L +V S + C V C G +S IT Y+ P V L P PV G+ +TLRC
Sbjct: 83 FNLSNVTGNSRIL-CSVYCNGSQITGSSNITVYRLPERVELAPLPPWQPV--GQNFTLRC 139
Query: 154 HVTQVFPVGYLVVTLRHGSRVIYSESLERFTGL-DLANVTLTYEFAAGPRDFWQPVICHA 212
V P L V L + + E L R + + A VT T A D P C
Sbjct: 140 QVEDGSPRTSLTVVL-----LRWEEELSRQPAVEEPAEVTAT--VLASRDDHGAPFSCRT 192
Query: 213 RLNLD----GLVVRNSSAP 227
L++ GL V N+SAP
Sbjct: 193 ELDMQPQGLGLFV-NTSAP 210
>gi|167466198 intercellular adhesion molecule 1 precursor [Homo
sapiens]
Length = 532
Score = 53.9 bits (128), Expect = 1e-07
Identities = 55/177 (31%), Positives = 72/177 (40%), Gaps = 34/177 (19%)
Query: 8 SLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQL 67
+LL L A +PG G+A TSV SP V + G SV +
Sbjct: 12 ALLVLLGALFPGPGNAQ-------------------TSV------SPSKVILPRGGSVLV 46
Query: 68 NCSNSCPQPQNSSLRTPL-RQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGKTRWATS 126
CS SC QP+ + TPL ++ L G Y+L +V+ S C C A +
Sbjct: 47 TCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQE-DSQPMCYSNCPDGQSTAKT 105
Query: 127 RITAYKPPHSVILEP-----PVLKGRKYTLRCHVTQVFPVGYLVVTLRHGSRVIYSE 178
+T Y P V L P PV G+ TLRC V P L V L G + + E
Sbjct: 106 FLTVYWTPERVELAPLPSWQPV--GKNLTLRCQVEGGAPRANLTVVLLRGEKELKRE 160
>gi|4507875 vascular cell adhesion molecule 1 isoform a precursor
[Homo sapiens]
Length = 739
Score = 51.6 bits (122), Expect = 6e-07
Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 12/183 (6%)
Query: 47 PFWVRMSP-EFVAVQPGKSVQLNCS-NSCPQPQNS---SLRTPLRQGKTLRGPGWVSYQL 101
PF V +SP +A Q G SV L CS C P S + +PL GK +R G S
Sbjct: 312 PFTVEISPGPRIAAQIGDSVMLTCSVMGCESPSFSWRTQIDSPL-SGK-VRSEGTNSTLT 369
Query: 102 LDVRAWSSLAH--CLVTCAGKTRWATSRITAYKPPHSVILEPP--VLKGRKYTLRCHVTQ 157
L ++ + C VTC K ++ Y P +E ++ G T+ C V
Sbjct: 370 LSPVSFENEHSYLCTVTCGHKKLEKGIQVELYSFPRDPEIEMSGGLVNGSSVTVSCKVPS 429
Query: 158 VFPVGYLVVTLRHGSRVIYS-ESLERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNL 216
V+P+ L + L G ++ + E LE L N +L F D + ++C A+L++
Sbjct: 430 VYPLDRLEIELLKGETILENIEFLEDTDMKSLENKSLEMTFIPTIEDTGKALVCQAKLHI 489
Query: 217 DGL 219
D +
Sbjct: 490 DDM 492
Score = 44.7 bits (104), Expect = 7e-05
Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 10/182 (5%)
Query: 45 SVPFWVRMSPEF-VAVQPGKSVQLNCSNS-CPQP---QNSSLRTPLRQGKTLRGPGWVSY 99
S F + +PE Q G SV L CS + C P + + +PL GK +
Sbjct: 22 SQAFKIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN-GKVTNEGTTSTL 80
Query: 100 QLLDVRAWSSLAH-CLVTCAGKTRWATSRITAYKPPHS--VILEPPVLKGRKYTLRCHVT 156
+ V + ++ C TC + ++ Y P + L P+ G+ T++C V
Sbjct: 81 TMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVA 140
Query: 157 QVFPVGYLVVTLRHGSRVIYS-ESLERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLN 215
V+P L + L G ++ S E LE L +L F D + ++C A+L+
Sbjct: 141 DVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLH 200
Query: 216 LD 217
+D
Sbjct: 201 ID 202
>gi|18201909 vascular cell adhesion molecule 1 isoform b precursor
[Homo sapiens]
Length = 647
Score = 44.7 bits (104), Expect = 7e-05
Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 10/182 (5%)
Query: 45 SVPFWVRMSPEF-VAVQPGKSVQLNCSNS-CPQP---QNSSLRTPLRQGKTLRGPGWVSY 99
S F + +PE Q G SV L CS + C P + + +PL GK +
Sbjct: 22 SQAFKIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN-GKVTNEGTTSTL 80
Query: 100 QLLDVRAWSSLAH-CLVTCAGKTRWATSRITAYKPPHS--VILEPPVLKGRKYTLRCHVT 156
+ V + ++ C TC + ++ Y P + L P+ G+ T++C V
Sbjct: 81 TMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVA 140
Query: 157 QVFPVGYLVVTLRHGSRVIYS-ESLERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLN 215
V+P L + L G ++ S E LE L +L F D + ++C A+L+
Sbjct: 141 DVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLH 200
Query: 216 LD 217
+D
Sbjct: 201 ID 202
Score = 39.7 bits (91), Expect = 0.002
Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 4/165 (2%)
Query: 59 VQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCL--VT 116
+Q G SV + CS+ L G G + L+ +R S + V
Sbjct: 236 LQEGGSVTMTCSSEGLPAPEIFWSKKLDNGNLQHLSGNATLTLIAMRMEDSGIYVCEGVN 295
Query: 117 CAGKTRWATSRIT-AYKPPHSVILEPPVLKGRKYTLRCHVTQVFPVGYLVVTLRHGSRVI 175
GK R I A+ + + ++ G T+ C V V+P+ L + L G ++
Sbjct: 296 LIGKNRKEVELIVQAFPRDPEIEMSGGLVNGSSVTVSCKVPSVYPLDRLEIELLKGETIL 355
Query: 176 YS-ESLERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNLDGL 219
+ E LE L N +L F D + ++C A+L++D +
Sbjct: 356 ENIEFLEDTDMKSLENKSLEMTFIPTIEDTGKALVCQAKLHIDDM 400
>gi|25121980 dispatched B [Homo sapiens]
Length = 1401
Score = 37.0 bits (84), Expect = 0.015
Identities = 29/78 (37%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 19 GVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCS-NSCPQPQ 77
G G A G + Q P+G PLAP G S S + AV P S + +CS +SCP
Sbjct: 11 GSGPAPGPGPEGEQRPEGEPLAPDGGSPD-----STQTKAVPPEASPERSCSLHSCPLED 65
Query: 78 NSSLRTPLRQGKTLRGPG 95
SS P TL+ G
Sbjct: 66 PSSSSGPPPTTSTLQPVG 83
>gi|239757369 PREDICTED: hypothetical protein [Homo sapiens]
Length = 188
Score = 35.4 bits (80), Expect = 0.043
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 16/78 (20%)
Query: 6 PLSLLFFLAAAYPGVGSALGR---RTKRAQSPKGSPL---APSGTSVP--FWVRMS---- 53
P L L+ A G+G + R R + Q P+G L APS P FW + +
Sbjct: 106 PRLLFLLLSGARRGIGKGVPRGRLRRQLRQHPRGGGLLAGAPSALLPPPAFWNKAASLWI 165
Query: 54 ----PEFVAVQPGKSVQL 67
PEF++VQPG SV+L
Sbjct: 166 SFHQPEFLSVQPGGSVRL 183
>gi|239751917 PREDICTED: hypothetical protein [Homo sapiens]
Length = 188
Score = 35.4 bits (80), Expect = 0.043
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 16/78 (20%)
Query: 6 PLSLLFFLAAAYPGVGSALGR---RTKRAQSPKGSPL---APSGTSVP--FWVRMS---- 53
P L L+ A G+G + R R + Q P+G L APS P FW + +
Sbjct: 106 PRLLFLLLSGARRGIGKGVPRGRLRRQLRQHPRGGGLLAGAPSALLPPPAFWNKAASLWI 165
Query: 54 ----PEFVAVQPGKSVQL 67
PEF++VQPG SV+L
Sbjct: 166 SFHQPEFLSVQPGGSVRL 183
>gi|239746407 PREDICTED: hypothetical protein XP_002343705 [Homo
sapiens]
Length = 188
Score = 35.4 bits (80), Expect = 0.043
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 16/78 (20%)
Query: 6 PLSLLFFLAAAYPGVGSALGR---RTKRAQSPKGSPL---APSGTSVP--FWVRMS---- 53
P L L+ A G+G + R R + Q P+G L APS P FW + +
Sbjct: 106 PRLLFLLLSGARRGIGKGVPRGRLRRQLRQHPRGGGLLAGAPSALLPPPAFWNKAASLWI 165
Query: 54 ----PEFVAVQPGKSVQL 67
PEF++VQPG SV+L
Sbjct: 166 SFHQPEFLSVQPGGSVRL 183
>gi|19923084 polycystin-1L1 [Homo sapiens]
Length = 2849
Score = 33.5 bits (75), Expect = 0.16
Identities = 42/167 (25%), Positives = 60/167 (35%), Gaps = 14/167 (8%)
Query: 8 SLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQL 67
SL L YPG G+ R G G+SV +++ P + P L
Sbjct: 2341 SLTTLLDGLYPG-GTPSARVPGAQPGALGGKCYLIGSSVIRQLKVFPRHLCKPPRPFSAL 2399
Query: 68 ------NCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQ---LLDVRAWSSLAHCLVTCA 118
CS P+N L P Q TL GPG + +L + + AH ++
Sbjct: 2400 IEDSIPTCSPEVGGPENPYLIDPENQNVTLNGPGGCGTREDCVLSLGRTRTEAHTALSRL 2459
Query: 119 GKTRWATSRITAYKPPHSVILEPPVLKGRKYTLRCHVTQVFPVGYLV 165
+ W R T H + PP +LR ++ P G LV
Sbjct: 2460 RASMW-IDRSTRAVSVHFTLYNPPTQLFTSVSLR---VEILPTGSLV 2502
>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
Length = 625
Score = 32.3 bits (72), Expect = 0.37
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 60 QPGKSVQLNCSNSCPQP----QNSSLRTPLRQGKTLRGPGWV--SYQLLDVRAWSS---L 110
Q G S LN SNSCP+P ++ +R P+ + W+ S + +D SS +
Sbjct: 184 QNGISYVLNASNSCPKPDFICESRFMRVPINDNYCEKLLPWLDKSIEFIDKAKLSSCQVI 243
Query: 111 AHCLVTCAGKTRWATSRI 128
HCL AG +R AT I
Sbjct: 244 VHCL---AGISRSATIAI 258
>gi|38787970 tensin like C1 domain containing phosphatase isoform 3
[Homo sapiens]
Length = 1285
Score = 31.2 bits (69), Expect = 0.82
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 33 SPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLR 92
SP GSPL P + +P W+ SPE P + L S N + PL + + L
Sbjct: 902 SPDGSPLTPVPSQMP-WLVASPEPPQSSPTPAFPLAAS----YDTNGLSQPPLPEKRHLP 956
Query: 93 GPG 95
GPG
Sbjct: 957 GPG 959
>gi|38787957 tensin like C1 domain containing phosphatase isoform 2
[Homo sapiens]
Length = 1409
Score = 31.2 bits (69), Expect = 0.82
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 33 SPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLR 92
SP GSPL P + +P W+ SPE P + L S N + PL + + L
Sbjct: 1026 SPDGSPLTPVPSQMP-WLVASPEPPQSSPTPAFPLAAS----YDTNGLSQPPLPEKRHLP 1080
Query: 93 GPG 95
GPG
Sbjct: 1081 GPG 1083
>gi|38787941 tensin like C1 domain containing phosphatase isoform 1
[Homo sapiens]
Length = 1419
Score = 31.2 bits (69), Expect = 0.82
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 33 SPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLR 92
SP GSPL P + +P W+ SPE P + L S N + PL + + L
Sbjct: 1036 SPDGSPLTPVPSQMP-WLVASPEPPQSSPTPAFPLAAS----YDTNGLSQPPLPEKRHLP 1090
Query: 93 GPG 95
GPG
Sbjct: 1091 GPG 1093
>gi|109633022 mucosal vascular addressin cell adhesion molecule 1
isoform a precursor [Homo sapiens]
Length = 382
Score = 30.0 bits (66), Expect = 1.8
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 5/119 (4%)
Query: 47 PFWVRMSPEFVAVQPGKSVQLNCSNSC----PQPQNSSLRTPLRQGKTLRGPGWVSYQLL 102
P V VAV G S QL C +C Q L T L ++ G ++ +
Sbjct: 25 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNA 84
Query: 103 DVRAWSSLAHCLVTCAGKTRWATSRITAYKPPHSVILEPPVLKGRKYTLRCHVTQVFPV 161
+ A + C+ +C G+T T ++ Y P + + P L + C +V PV
Sbjct: 85 SLSA-AGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTVSPAALVPGDPEVACTAHKVTPV 142
>gi|18780285 mucosal vascular addressin cell adhesion molecule 1
isoform b precursor [Homo sapiens]
Length = 295
Score = 30.0 bits (66), Expect = 1.8
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 5/119 (4%)
Query: 47 PFWVRMSPEFVAVQPGKSVQLNCSNSC----PQPQNSSLRTPLRQGKTLRGPGWVSYQLL 102
P V VAV G S QL C +C Q L T L ++ G ++ +
Sbjct: 25 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNA 84
Query: 103 DVRAWSSLAHCLVTCAGKTRWATSRITAYKPPHSVILEPPVLKGRKYTLRCHVTQVFPV 161
+ A + C+ +C G+T T ++ Y P + + P L + C +V PV
Sbjct: 85 SLSA-AGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTVSPAALVPGDPEVACTAHKVTPV 142
>gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precursor
[Homo sapiens]
Length = 944
Score = 29.6 bits (65), Expect = 2.4
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 95 GWVSYQLLDVRAWSSLAHCLVTC----AGKTRWATSRITAYKPPHSVILEPPVLKGRKYT 150
G + Y + +R S +HC TC + + + R + + P ++ LEP ++ R T
Sbjct: 755 GTLKYMEVTLRPTDSQSHCYRTCFSPASDGSDFTFLRPLSVQQPTALALEPDAIRSRSNT 814
Query: 151 LRCHVTQVFP 160
LR Q P
Sbjct: 815 LRERSQQAPP 824
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 29.6 bits (65), Expect = 2.4
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 23 ALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLR 82
AL RR++ S KG +P G+S SPE P S S P+P+ S R
Sbjct: 1631 ALPRRSRSGSSSKGRGPSPEGSSS---TESSPEH---PPKSRTARRGSRSSPEPKTKS-R 1683
Query: 83 TPLRQGKTLRGP 94
TP R+ + P
Sbjct: 1684 TPPRRRSSRSSP 1695
>gi|14277685 protocadherin gamma subfamily C, 5 isoform 2 precursor
[Homo sapiens]
Length = 878
Score = 29.3 bits (64), Expect = 3.1
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 95 GWVSYQLLDVRAWSSLAHCLVTC----AGKTRWATSRITAYKPPHSVILEPPVLKGRKYT 150
G + Y + +R S +HC TC + + + R + + P ++ LEP ++ R T
Sbjct: 755 GTLKYMEVTLRPTDSQSHCYRTCFSPASDGSDFTFLRPLSVQQPTALALEPDAIRSRSNT 814
Query: 151 LR 152
LR
Sbjct: 815 LR 816
>gi|157311649 neogenin homolog 1 [Homo sapiens]
Length = 1461
Score = 29.3 bits (64), Expect = 3.1
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 5 FPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKS 64
F L L L PG +A R+ S SP A T PF+ + P G S
Sbjct: 16 FWLYCLLLLGRRAPGAAAA------RSGSAPQSPGASIRTFTPFYFLVEPVDTLSVRGSS 69
Query: 65 VQLNCS-NSCPQPQ 77
V LNCS S P P+
Sbjct: 70 VILNCSAYSEPSPK 83
>gi|4758822 nephrin precursor [Homo sapiens]
Length = 1241
Score = 28.9 bits (63), Expect = 4.1
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 45 SVP--FWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQL 101
SVP FW PE + V G SV+L C S P + L G R PG+ Y+L
Sbjct: 29 SVPRGFWAL--PENLTVVEGASVELRCGVSTPGSAVQWAKDGLLLGPDPRIPGFPRYRL 85
>gi|205360962 polycystin 1 isoform 2 precursor [Homo sapiens]
Length = 4302
Score = 28.9 bits (63), Expect = 4.1
Identities = 49/186 (26%), Positives = 74/186 (39%), Gaps = 40/186 (21%)
Query: 30 RAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGK 89
RA P GS +A +G+SVPFW ++ + N S P SS R P
Sbjct: 1808 RASEPGGSFVA-AGSSVPFWGQL-----------ATGTNVSWCWAVPGGSSKRGP-HVTM 1854
Query: 90 TLRGPGWVSYQL--LDVRAWSSLAHCLVT---CAGKTRWATSRITAYKPPHSVILEPPVL 144
G S +L + +W S + L G WA+S++ A P V + +
Sbjct: 1855 VFPDAGTFSIRLNASNAVSWVSATYNLTAEEPIVGLVLWASSKVVA--PGQLVHFQILLA 1912
Query: 145 KGRKYTLRCHV----TQVFP----------VGYLVVTLRHGSRVIYSES------LERFT 184
G T R V +V P VG VV++R + V ++++ LE +
Sbjct: 1913 AGSAVTFRLQVGGANPEVLPGPRFSHSFPRVGDHVVSVRGKNHVSWAQAQVRIVVLEAVS 1972
Query: 185 GLDLAN 190
GL + N
Sbjct: 1973 GLQVPN 1978
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,996,063
Number of Sequences: 37866
Number of extensions: 479262
Number of successful extensions: 1396
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1364
Number of HSP's gapped (non-prelim): 47
length of query: 237
length of database: 18,247,518
effective HSP length: 99
effective length of query: 138
effective length of database: 14,498,784
effective search space: 2000832192
effective search space used: 2000832192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.