Guide to the Human Genome
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Name: C1orf58 Sequence: fasta or formatted (411aa) NCBI GI: 124244088
Description:

Bro1-domain-containing protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         40           2
 C cysteine            2.2          9           1
 D aspartate           3.6         15           2
 E glutamate           8.8         36           3
 F phenylalanine       4.4         18           2
 G glycine             4.6         19           1
 H histidine           2.4         10           1
 I isoleucine          4.6         19           1
 K lysine              9.0         37           1
 L leucine            10.0         41           2
 M methionine          1.2          5           2
 N asparagine          3.4         14           1
 P proline             6.1         25           2
 Q glutamine           4.1         17           2
 R arginine            3.6         15           1
 S serine              6.3         26           2
 T threonine           6.1         25           1
 V valine              3.6         15           2
 W tryptophan          1.2          5           1
 Y tyrosine            4.9         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Bro1-domain-containing protein 
PTPN23                0.044   protein tyrosine phosphatase, non-receptor type 23 [...
PDCD6IP               0.042   programmed cell death 6 interacting protein isoform...
PDCD6IP               0.042   programmed cell death 6 interacting protein isoform ...
RHPN1                 0.022   rhophilin 1 
RHPN2                 0.018   rhophilin, Rho GTPase binding protein 2 
TXNDC2                0.011   thioredoxin domain-containing 2 isoform 1 
TXNDC2                0.011   thioredoxin domain-containing 2 isoform 2 
TXNDC2                0.011   thioredoxin domain-containing 2 isoform 1 
TRIP10                0.010   thyroid hormone receptor interactor 10 
CALR                  0.009   calreticulin precursor 
CEP110                0.009   centrosomal protein 110kDa 
TTN                   0.006   titin isoform N2-A 
TTN                   0.006   titin isoform novex-2 
TTN                   0.006   titin isoform novex-1 
TTN                   0.006   titin isoform N2-B 
MYO9B                 0.006   myosin IXB isoform 2 
MYO9B                 0.006   myosin IXB isoform 1 
MOSPD2                0.006   motile sperm domain containing 2 
USHBP1                0.006   Usher syndrome 1C binding protein 1 
PDGFRB                0.005   platelet-derived growth factor receptor beta precurso...
TSSK1B                0.005   testis-specific serine kinase 1 
KIAA0467              0.005   hypothetical protein LOC23334 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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