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Search of human proteins with 38016911
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38016911 stomatin isoform a [Homo sapiens]
(288 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38016911 stomatin isoform a [Homo sapiens] 559 e-159
gi|21686995 stomatin-like 3 isoform 1 [Homo sapiens] 378 e-105
gi|221316744 stomatin-like 3 isoform 2 [Homo sapiens] 377 e-105
gi|7657615 podocin [Homo sapiens] 276 1e-74
gi|38016907 stomatin isoform b [Homo sapiens] 133 2e-31
gi|20149563 stomatin (EPB72)-like 1 [Homo sapiens] 128 7e-30
gi|7305503 stomatin (EPB72)-like 2 [Homo sapiens] 110 1e-24
gi|5031699 flotillin 1 [Homo sapiens] 50 2e-06
gi|4505773 prohibitin [Homo sapiens] 48 9e-06
gi|6005854 prohibitin 2 isoform 2 [Homo sapiens] 45 1e-04
gi|221307584 prohibitin 2 isoform 1 [Homo sapiens] 45 1e-04
gi|94538362 flotillin 2 [Homo sapiens] 44 2e-04
gi|154800489 ER lipid raft associated 1 [Homo sapiens] 35 0.058
gi|154800487 ER lipid raft associated 1 [Homo sapiens] 35 0.058
gi|58535453 CDK5 regulatory subunit associated protein 2 isoform... 34 0.13
gi|58535451 CDK5 regulatory subunit associated protein 2 isoform... 34 0.13
gi|88196790 coiled-coil domain containing 88 [Homo sapiens] 32 0.50
gi|30578410 source of immunodominant MHC-associated peptides [Ho... 32 0.84
gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens] 32 0.84
gi|118498362 kinectin 1 isoform b [Homo sapiens] 31 1.4
gi|118498368 kinectin 1 isoform c [Homo sapiens] 31 1.4
gi|167900484 pentraxin 3 [Homo sapiens] 31 1.4
gi|21536423 amphiphysin isoform 2 [Homo sapiens] 29 5.5
gi|4502081 amphiphysin isoform 1 [Homo sapiens] 29 5.5
gi|19913410 major vault protein [Homo sapiens] 28 7.2
gi|19913412 major vault protein [Homo sapiens] 28 7.2
gi|4504643 interleukin 12 receptor, beta 2 precursor [Homo sapiens] 28 7.2
gi|148762963 armadillo repeat containing 2 [Homo sapiens] 28 7.2
gi|45439306 aspartyl-tRNA synthetase [Homo sapiens] 28 7.2
gi|227430303 CD109 antigen isoform 3 precursor [Homo sapiens] 28 9.3
>gi|38016911 stomatin isoform a [Homo sapiens]
Length = 288
Score = 559 bits (1440), Expect = e-159
Identities = 288/288 (100%), Positives = 288/288 (100%)
Query: 1 MAEKRHTRDSEAQRLPDSFKDSPSKGLGPCGWILVAFSFLFTVITFPISIWMCIKIIKEY 60
MAEKRHTRDSEAQRLPDSFKDSPSKGLGPCGWILVAFSFLFTVITFPISIWMCIKIIKEY
Sbjct: 1 MAEKRHTRDSEAQRLPDSFKDSPSKGLGPCGWILVAFSFLFTVITFPISIWMCIKIIKEY 60
Query: 61 ERAIIFRLGRILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDG 120
ERAIIFRLGRILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDG
Sbjct: 61 ERAIIFRLGRILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDG 120
Query: 121 VVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQSTLDD 180
VVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQSTLDD
Sbjct: 121 VVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQSTLDD 180
Query: 181 ATDAWGIKVERVEIKDVKLPVQLQRAMAAEAEASREARAKVIAAEGEMNASRALKEASMV 240
ATDAWGIKVERVEIKDVKLPVQLQRAMAAEAEASREARAKVIAAEGEMNASRALKEASMV
Sbjct: 181 ATDAWGIKVERVEIKDVKLPVQLQRAMAAEAEASREARAKVIAAEGEMNASRALKEASMV 240
Query: 241 ITESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGIIGAKHSHLG 288
ITESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGIIGAKHSHLG
Sbjct: 241 ITESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGIIGAKHSHLG 288
>gi|21686995 stomatin-like 3 isoform 1 [Homo sapiens]
Length = 291
Score = 378 bits (970), Expect = e-105
Identities = 186/270 (68%), Positives = 228/270 (84%)
Query: 17 DSFKDSPSKGLGPCGWILVAFSFLFTVITFPISIWMCIKIIKEYERAIIFRLGRILQGGA 76
++F +K LG CGWIL + SFL +ITFPISIWMC+KIIKEYERA++FRLGRI A
Sbjct: 14 ENFVGVNNKRLGVCGWILFSLSFLLVIITFPISIWMCLKIIKEYERAVVFRLGRIQADKA 73
Query: 77 KGPGLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANI 136
KGPGL +LPC D F+KVD+RT++ +IPPQEILT+DSVT VDGVVYYR+ +A AVAN+
Sbjct: 74 KGPGLILVLPCIDVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANV 133
Query: 137 TNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQSTLDDATDAWGIKVERVEIKD 196
+ AT LLAQTTLRNVLGT+ LSQIL+ REEIAH++Q+ LDDAT+ WGI+V RVEIKD
Sbjct: 134 NDVHQATFLLAQTTLRNVLGTQTLSQILAGREEIAHSIQTLLDDATELWGIRVARVEIKD 193
Query: 197 VKLPVQLQRAMAAEAEASREARAKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTL 256
V++PVQLQR+MAAEAEA+REARAKV+AAEGEMNAS++LK ASMV+ ESP ALQLRYLQTL
Sbjct: 194 VRIPVQLQRSMAAEAEATREARAKVLAAEGEMNASKSLKSASMVLAESPIALQLRYLQTL 253
Query: 257 TTIAAEKNSTIVFPLPIDMLQGIIGAKHSH 286
+T+A EKNSTIVFPLP+++L+GI G + +
Sbjct: 254 STVATEKNSTIVFPLPMNILEGIGGVSYDN 283
>gi|221316744 stomatin-like 3 isoform 2 [Homo sapiens]
Length = 282
Score = 377 bits (968), Expect = e-105
Identities = 185/263 (70%), Positives = 225/263 (85%)
Query: 24 SKGLGPCGWILVAFSFLFTVITFPISIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFF 83
+K LG CGWIL + SFL +ITFPISIWMC+KIIKEYERA++FRLGRI AKGPGL
Sbjct: 12 NKRLGVCGWILFSLSFLLVIITFPISIWMCLKIIKEYERAVVFRLGRIQADKAKGPGLIL 71
Query: 84 ILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSAT 143
+LPC D F+KVD+RT++ +IPPQEILT+DSVT VDGVVYYR+ +A AVAN+ + AT
Sbjct: 72 VLPCIDVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANVNDVHQAT 131
Query: 144 RLLAQTTLRNVLGTKNLSQILSDREEIAHNMQSTLDDATDAWGIKVERVEIKDVKLPVQL 203
LLAQTTLRNVLGT+ LSQIL+ REEIAH++Q+ LDDAT+ WGI+V RVEIKDV++PVQL
Sbjct: 132 FLLAQTTLRNVLGTQTLSQILAGREEIAHSIQTLLDDATELWGIRVARVEIKDVRIPVQL 191
Query: 204 QRAMAAEAEASREARAKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEK 263
QR+MAAEAEA+REARAKV+AAEGEMNAS++LK ASMV+ ESP ALQLRYLQTL+T+A EK
Sbjct: 192 QRSMAAEAEATREARAKVLAAEGEMNASKSLKSASMVLAESPIALQLRYLQTLSTVATEK 251
Query: 264 NSTIVFPLPIDMLQGIIGAKHSH 286
NSTIVFPLP+++L+GI G + +
Sbjct: 252 NSTIVFPLPMNILEGIGGVSYDN 274
>gi|7657615 podocin [Homo sapiens]
Length = 383
Score = 276 bits (707), Expect = 1e-74
Identities = 128/253 (50%), Positives = 186/253 (73%)
Query: 24 SKGLGPCGWILVAFSFLFTVITFPISIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFF 83
S GLG C W+LV S LF ++TFP SIW C+K+++EYER IIFRLG +L G AKGPGLFF
Sbjct: 95 SSGLGACEWLLVLISLLFIIMTFPFSIWFCVKVVQEYERVIIFRLGHLLPGRAKGPGLFF 154
Query: 84 ILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSAT 143
LPC D++ KVD+R + +IP EI+TKD + +D + YYR++NA+L ++++ + A
Sbjct: 155 FLPCLDTYHKVDLRLQTLEIPFHEIVTKDMFIMEIDAICYYRMENASLLLSSLAHVSKAV 214
Query: 144 RLLAQTTLRNVLGTKNLSQILSDREEIAHNMQSTLDDATDAWGIKVERVEIKDVKLPVQL 203
+ L QTT++ +L ++L++IL +R+ IA + + LD T WGIKVER+EIKDV+LP L
Sbjct: 215 QFLVQTTMKRLLAHRSLTEILLERKSIAQDAKVALDSVTCIWGIKVERIEIKDVRLPAGL 274
Query: 204 QRAMAAEAEASREARAKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEK 263
Q ++A EAEA R+A+ ++IAAE E AS +L+ A+ +++ +PAA+QLRYL TL +++ EK
Sbjct: 275 QHSLAVEAEAQRQAKVRMIAAEAEKAASESLRMAAEILSGTPAAVQLRYLHTLQSLSTEK 334
Query: 264 NSTIVFPLPIDML 276
ST+V PLP D+L
Sbjct: 335 PSTVVLPLPFDLL 347
>gi|38016907 stomatin isoform b [Homo sapiens]
Length = 123
Score = 133 bits (334), Expect = 2e-31
Identities = 69/69 (100%), Positives = 69/69 (100%)
Query: 220 KVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGI 279
KVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGI
Sbjct: 55 KVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGI 114
Query: 280 IGAKHSHLG 288
IGAKHSHLG
Sbjct: 115 IGAKHSHLG 123
Score = 121 bits (304), Expect = 6e-28
Identities = 56/57 (98%), Positives = 57/57 (100%)
Query: 1 MAEKRHTRDSEAQRLPDSFKDSPSKGLGPCGWILVAFSFLFTVITFPISIWMCIKII 57
MAEKRHTRDSEAQRLPDSFKDSPSKGLGPCGWILVAFSFLFTVITFPISIWMCIK+I
Sbjct: 1 MAEKRHTRDSEAQRLPDSFKDSPSKGLGPCGWILVAFSFLFTVITFPISIWMCIKVI 57
>gi|20149563 stomatin (EPB72)-like 1 [Homo sapiens]
Length = 398
Score = 128 bits (321), Expect = 7e-30
Identities = 62/165 (37%), Positives = 104/165 (63%), Gaps = 2/165 (1%)
Query: 30 CGWILVAFSFLFTVITFPISIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTD 89
C ++ FL ++TFPIS W +KI+ YER I+FRLGRI +GPG+ +LP D
Sbjct: 55 CHGLISFLGFLLLLVTFPISGWFALKIVPTYERMIVFRLGRIRT--PQGPGMVLLLPFID 112
Query: 90 SFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLLAQT 149
SF +VD+RT +F++PP ++ +KD +SV V +R+ + L+V + + ++ATR+ AQ
Sbjct: 113 SFQRVDLRTRAFNVPPCKLASKDGAVLSVGADVQFRIWDPVLSVMTVKDLNTATRMTAQN 172
Query: 150 TLRNVLGTKNLSQILSDREEIAHNMQSTLDDATDAWGIKVERVEI 194
+ L + L +I ++ +I+ + ++D T AWG++V+RVE+
Sbjct: 173 AMTKALLKRPLREIQMEKLKISDQLLLEINDVTRAWGLEVDRVEL 217
>gi|7305503 stomatin (EPB72)-like 2 [Homo sapiens]
Length = 356
Score = 110 bits (275), Expect = 1e-24
Identities = 61/202 (30%), Positives = 113/202 (55%), Gaps = 7/202 (3%)
Query: 54 IKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTDSFIKVD-MRTISFDIPPQEILTKD 112
+ + + E ++ R+GR + PGL ++P D V ++ I ++P Q +T D
Sbjct: 38 VLFVPQQEAWVVERMGRFHR--ILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLD 95
Query: 113 SVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAH 172
+VT+ +DGV+Y R+ + A + + + A LAQTT+R+ LG +L ++ +RE +
Sbjct: 96 NVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNA 155
Query: 173 NMQSTLDDATDAWGIKVERVEIKDVKLPVQLQRAMAAEAEASREARAKVIAAEG----EM 228
++ ++ A D WGI+ R EIKD+ +P +++ +M + EA R RA V+ +EG +
Sbjct: 156 SIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAI 215
Query: 229 NASRALKEASMVITESPAALQL 250
N + K+A ++ +E+ A Q+
Sbjct: 216 NVAEGKKQAQILASEAEKAEQI 237
>gi|5031699 flotillin 1 [Homo sapiens]
Length = 427
Score = 50.1 bits (118), Expect = 2e-06
Identities = 40/183 (21%), Positives = 77/183 (42%), Gaps = 23/183 (12%)
Query: 80 GLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQN------ATLAV 133
G F+LPC ++ + T++ ++ +++ T+ V ISV G+ ++Q A
Sbjct: 27 GRVFVLPCIQQIQRISLNTLTLNVKSEKVYTRHGVPISVTGIAQVKIQGQNKEMLAAACQ 86
Query: 134 ANITNADSATRLLAQTTL----RNVLGTKNLSQILSDREEIAHNMQSTLDDATDAWGIKV 189
+ ++ +A TL R ++ + +I DR++ + + GI V
Sbjct: 87 MFLGKTEAEIAHIALETLEGHQRAIMAHMTVEEIYKDRQKFSEQVFKVASSDLVNMGISV 146
Query: 190 ERVEIKDV------------KLPVQLQR-AMAAEAEASREARAKVIAAEGEMNASRALKE 236
+KD+ Q+Q+ A EAEA R+A + A+ E +++ L E
Sbjct: 147 VSYTLKDIHDDQDYLHSLGKARTAQVQKDARIGEAEAKRDAGIREAKAKQEKVSAQYLSE 206
Query: 237 ASM 239
M
Sbjct: 207 IEM 209
>gi|4505773 prohibitin [Homo sapiens]
Length = 272
Score = 48.1 bits (113), Expect = 9e-06
Identities = 48/219 (21%), Positives = 98/219 (44%), Gaps = 25/219 (11%)
Query: 62 RAIIFRLGRILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILT--KDSVTISVD 119
RA+IF R +Q G G F++P I D R+ ++P ++T KD +++
Sbjct: 35 RAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVP---VITGSKDLQNVNIT 91
Query: 120 GVVYYR-VQNATLAVANITNADSATRLLAQTT---LRNVLGTKNLSQILSDREEIAHNMQ 175
+ +R V + + D R+L T L++V+ + ++++ RE ++ +
Sbjct: 92 LRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVS 151
Query: 176 STLDDATDAWGIKVERVEIKDVKLPVQLQRAMAAEAEASREA--------------RAKV 221
L + +G+ ++ V + + + A+ A+ A +EA +A +
Sbjct: 152 DDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAI 211
Query: 222 IAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIA 260
I+AEG+ A+ + A+ + T ++LR L+ IA
Sbjct: 212 ISAEGDSKAAELI--ANSLATAGDGLIELRKLEAAEDIA 248
>gi|6005854 prohibitin 2 isoform 2 [Homo sapiens]
Length = 299
Score = 44.7 bits (104), Expect = 1e-04
Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 31/222 (13%)
Query: 62 RAIIF-RLGRILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILT----KDSVTI 116
RAI F R+G + Q GL F +P I D+R P++I + KD +
Sbjct: 48 RAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRA-----RPRKISSPTGSKDLQMV 102
Query: 117 SVDGVVYYRVQNATL-AVANITNADSATRLL---AQTTLRNVLGTKNLSQILSDREEIAH 172
++ V R L ++ D R+L L++V+ N SQ+++ R +++
Sbjct: 103 NISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSL 162
Query: 173 NMQSTLDDATDAWGIKVERVEIKDVKLP--------------VQLQRAMAAEAEASREAR 218
++ L + + + ++ V I ++ + QRA +A +E R
Sbjct: 163 LIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQR 222
Query: 219 AKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIA 260
K++ AEGE A++ L EA ++++P ++LR ++ I+
Sbjct: 223 QKIVQAEGEAEAAKMLGEA---LSKNPGYIKLRKIRAAQNIS 261
>gi|221307584 prohibitin 2 isoform 1 [Homo sapiens]
Length = 299
Score = 44.7 bits (104), Expect = 1e-04
Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 31/222 (13%)
Query: 62 RAIIF-RLGRILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILT----KDSVTI 116
RAI F R+G + Q GL F +P I D+R P++I + KD +
Sbjct: 48 RAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRA-----RPRKISSPTGSKDLQMV 102
Query: 117 SVDGVVYYRVQNATL-AVANITNADSATRLL---AQTTLRNVLGTKNLSQILSDREEIAH 172
++ V R L ++ D R+L L++V+ N SQ+++ R +++
Sbjct: 103 NISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSL 162
Query: 173 NMQSTLDDATDAWGIKVERVEIKDVKLP--------------VQLQRAMAAEAEASREAR 218
++ L + + + ++ V I ++ + QRA +A +E R
Sbjct: 163 LIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQR 222
Query: 219 AKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIA 260
K++ AEGE A++ L EA ++++P ++LR ++ I+
Sbjct: 223 QKIVQAEGEAEAAKMLGEA---LSKNPGYIKLRKIRAAQNIS 261
>gi|94538362 flotillin 2 [Homo sapiens]
Length = 428
Score = 43.5 bits (101), Expect = 2e-04
Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 9/153 (5%)
Query: 87 CTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRV--QNATLAVA-------NIT 137
C ++ + ++ +++ T + V ++V GV ++ + LAVA N+
Sbjct: 38 CISDTQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQ 97
Query: 138 NADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQSTLDDATDAWGIKVERVEIKDV 197
+ + + LR++LGT + QI DR++ A ++ GI++ IKDV
Sbjct: 98 DIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDV 157
Query: 198 KLPVQLQRAMAAEAEASREARAKVIAAEGEMNA 230
V ++ A + A + AE E +A
Sbjct: 158 YDKVDYLSSLGKTQTAVVQRDADIGVAEAERDA 190
>gi|154800489 ER lipid raft associated 1 [Homo sapiens]
Length = 348
Score = 35.4 bits (80), Expect = 0.058
Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 14/223 (6%)
Query: 48 ISIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQE 107
+ ++ I I+E A+ +R G +L + GPG +LP +F V + ++
Sbjct: 19 VLLYASIHKIEEGHLAVYYRGGALLTSPS-GPGYHIMLPFITTFRSVQTTLQTDEVKNVP 77
Query: 108 ILTKDSVTISVD--GVVYYRVQNATLAVANITNADSATRLL---AQTTLRNVLGTKNLSQ 162
T V I +D VV A + AD L+ L L +
Sbjct: 78 CGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHELNQFCSAHTLQE 137
Query: 163 ILSDR-EEIAHNMQSTLDDATD--AWGIKVERVEIKDVKLPVQLQRAM-AAEAEASR--- 215
+ + ++I N++ L + A G+ ++ V + K+P ++R EAE ++
Sbjct: 138 VYIELFDQIDENLKQALQKDLNLMAPGLTIQAVRVTKPKIPEAIRRNFELMEAEKTKLLI 197
Query: 216 -EARAKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLT 257
+ KV+ E E +A+ EA + + Q + ++ T
Sbjct: 198 AAQKQKVVEKEAETERKKAVIEAEKIAQVAKIRFQQKVMEKET 240
>gi|154800487 ER lipid raft associated 1 [Homo sapiens]
Length = 348
Score = 35.4 bits (80), Expect = 0.058
Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 14/223 (6%)
Query: 48 ISIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQE 107
+ ++ I I+E A+ +R G +L + GPG +LP +F V + ++
Sbjct: 19 VLLYASIHKIEEGHLAVYYRGGALLTSPS-GPGYHIMLPFITTFRSVQTTLQTDEVKNVP 77
Query: 108 ILTKDSVTISVD--GVVYYRVQNATLAVANITNADSATRLL---AQTTLRNVLGTKNLSQ 162
T V I +D VV A + AD L+ L L +
Sbjct: 78 CGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHELNQFCSAHTLQE 137
Query: 163 ILSDR-EEIAHNMQSTLDDATD--AWGIKVERVEIKDVKLPVQLQRAM-AAEAEASR--- 215
+ + ++I N++ L + A G+ ++ V + K+P ++R EAE ++
Sbjct: 138 VYIELFDQIDENLKQALQKDLNLMAPGLTIQAVRVTKPKIPEAIRRNFELMEAEKTKLLI 197
Query: 216 -EARAKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLT 257
+ KV+ E E +A+ EA + + Q + ++ T
Sbjct: 198 AAQKQKVVEKEAETERKKAVIEAEKIAQVAKIRFQQKVMEKET 240
>gi|58535453 CDK5 regulatory subunit associated protein 2 isoform b
[Homo sapiens]
Length = 1814
Score = 34.3 bits (77), Expect = 0.13
Identities = 26/132 (19%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 143 TRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQSTLDDATDAWGIKVERVEIKDVKLPVQ 202
T + +T + + ++L + L +RE++ ++ +A G +++RV+ +D + VQ
Sbjct: 96 TEHIYKTNIELKVEVESLKRELQEREQLLIKASKAVESLAEAGGSEIQRVK-EDARKKVQ 154
Query: 203 LQRAMAAEAEASREARAKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAE 262
+ + +++ E ++ A++A E + TE+ AL+LR L+ +
Sbjct: 155 QVEDLLTK---------RILLLEKDVTAAQAELEKAFAGTETEKALRLRLESKLSEMKKM 205
Query: 263 KNSTIVFPLPID 274
+ L +D
Sbjct: 206 HEGDLAMALVLD 217
>gi|58535451 CDK5 regulatory subunit associated protein 2 isoform a
[Homo sapiens]
Length = 1893
Score = 34.3 bits (77), Expect = 0.13
Identities = 26/132 (19%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 143 TRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQSTLDDATDAWGIKVERVEIKDVKLPVQ 202
T + +T + + ++L + L +RE++ ++ +A G +++RV+ +D + VQ
Sbjct: 96 TEHIYKTNIELKVEVESLKRELQEREQLLIKASKAVESLAEAGGSEIQRVK-EDARKKVQ 154
Query: 203 LQRAMAAEAEASREARAKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAE 262
+ + +++ E ++ A++A E + TE+ AL+LR L+ +
Sbjct: 155 QVEDLLTK---------RILLLEKDVTAAQAELEKAFAGTETEKALRLRLESKLSEMKKM 205
Query: 263 KNSTIVFPLPID 274
+ L +D
Sbjct: 206 HEGDLAMALVLD 217
>gi|88196790 coiled-coil domain containing 88 [Homo sapiens]
Length = 1476
Score = 32.3 bits (72), Expect = 0.50
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 167 REEIAH--NMQSTLDDATDAWGIKVERVEIKDVKLPVQLQRAMAAEAEASREARAK 220
REE+A L D +A K+E + +L +L +A AEAEA REA A+
Sbjct: 731 REEVAQLRRKAEALGDELEAQARKLEAQNTEAARLSKELAQARRAEAEAHREAEAQ 786
>gi|30578410 source of immunodominant MHC-associated peptides [Homo
sapiens]
Length = 826
Score = 31.6 bits (70), Expect = 0.84
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 29 PCGWILVAFSFLFTVITFPISIWMCIKIIKEYERAII 65
P W+ F V TFP +W CIK I + ER +
Sbjct: 408 PTTWVSFFFDLHILVCTFPAGLWFCIKNIND-ERVFV 443
>gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]
Length = 1498
Score = 31.6 bits (70), Expect = 0.84
Identities = 42/179 (23%), Positives = 75/179 (41%), Gaps = 26/179 (14%)
Query: 93 KVDMRTISFDIPP--QEILTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTT 150
K MR + D+ +E+ TK + G++ R+Q A A ++A L Q
Sbjct: 975 KQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAA------KEAADAELGQ-- 1026
Query: 151 LRNVLGTKNLSQILSDREEIAHNMQSTLDDATDAWGIKVERVEIKDVKLPVQLQRAMAAE 210
LR G+ + S L +R + A +++ V L +LQ +A
Sbjct: 1027 LRAQGGSSDSSLALHERIQ--------------ALEAELQAVSHSKTLLEKELQEVIALT 1072
Query: 211 AEASREARAKVIAAEGEMNASRALKEASMVITES--PAALQLRYLQTLTTIAAEKNSTI 267
++ E+R KV+ E E+ SR ++ + ES AL+L + + T + N+ +
Sbjct: 1073 SQELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALELEHEKGKLTGLGQSNAAL 1131
>gi|118498362 kinectin 1 isoform b [Homo sapiens]
Length = 1306
Score = 30.8 bits (68), Expect = 1.4
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 13/118 (11%)
Query: 155 LGTKNLSQILSDREEIAHNMQSTLDDATDAWGIKVERVEIKDVKLPVQLQRAMAAEAEAS 214
L + +L++ E I +Q +++ + W +KV+ K +K Q+Q + + +
Sbjct: 1111 LECEKYKSVLAETEGILQKLQRSVEQEENKWKVKVDESH-KTIK---QMQSSFTSSEQEL 1166
Query: 215 REARAKVIAAEG--------EMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKN 264
R++ E EM +A E S +TE L+ + +TLT + E+N
Sbjct: 1167 ERLRSENKDIENLRREREHLEMELEKAEMERSTYVTE-VRELKAQLNETLTKLRTEQN 1223
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 30.8 bits (68), Expect = 1.4
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 13/118 (11%)
Query: 155 LGTKNLSQILSDREEIAHNMQSTLDDATDAWGIKVERVEIKDVKLPVQLQRAMAAEAEAS 214
L + +L++ E I +Q +++ + W +KV+ K +K Q+Q + + +
Sbjct: 1105 LECEKYKSVLAETEGILQKLQRSVEQEENKWKVKVDESH-KTIK---QMQSSFTSSEQEL 1160
Query: 215 REARAKVIAAEG--------EMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKN 264
R++ E EM +A E S +TE L+ + +TLT + E+N
Sbjct: 1161 ERLRSENKDIENLRREREHLEMELEKAEMERSTYVTE-VRELKAQLNETLTKLRTEQN 1217
>gi|167900484 pentraxin 3 [Homo sapiens]
Length = 381
Score = 30.8 bits (68), Expect = 1.4
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 15/106 (14%)
Query: 136 ITNADSATRLLAQTT----------LRNVLG--TKNLSQILSDREEIAHNMQSTLDD--- 180
+ N+ R+L Q T LR LG ++L++ + + S LD+
Sbjct: 63 LENSQMRERMLLQATDDVLRGELQRLREELGRLAESLARPCAPGAPAEARLTSALDELLQ 122
Query: 181 ATDAWGIKVERVEIKDVKLPVQLQRAMAAEAEASREARAKVIAAEG 226
AT G ++ R+E + + P + RA+AA E R+ RA + A +G
Sbjct: 123 ATRDAGRRLARMEGAEAQRPEEAGRALAAVLEELRQTRADLHAVQG 168
>gi|21536423 amphiphysin isoform 2 [Homo sapiens]
Length = 653
Score = 28.9 bits (63), Expect = 5.5
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 171 AHNMQSTLDDATDAWGIKVERV-EIKDVKLPVQLQRAMAAEAEASREARAKVIAAEGEMN 229
A N+Q L+ A + K+ + E KD + +Q EAE +R R G +
Sbjct: 10 AKNVQKRLNRAQEKVLQKLGKADETKDEQFEEYVQNFKRQEAEGTRLQRE----LRGYLA 65
Query: 230 ASRALKEASMVITES 244
A + ++EASM +TES
Sbjct: 66 AIKGMQEASMKLTES 80
>gi|4502081 amphiphysin isoform 1 [Homo sapiens]
Length = 695
Score = 28.9 bits (63), Expect = 5.5
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 171 AHNMQSTLDDATDAWGIKVERV-EIKDVKLPVQLQRAMAAEAEASREARAKVIAAEGEMN 229
A N+Q L+ A + K+ + E KD + +Q EAE +R R G +
Sbjct: 10 AKNVQKRLNRAQEKVLQKLGKADETKDEQFEEYVQNFKRQEAEGTRLQRE----LRGYLA 65
Query: 230 ASRALKEASMVITES 244
A + ++EASM +TES
Sbjct: 66 AIKGMQEASMKLTES 80
>gi|19913410 major vault protein [Homo sapiens]
Length = 893
Score = 28.5 bits (62), Expect = 7.2
Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 129 ATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQST--------LDD 180
+++ V ++ D TR Q +++ + SQ + + E Q + D
Sbjct: 636 SSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILD 695
Query: 181 ATDAWGIKVERVEIKDVKLPVQLQRAMAAEAEASREARAKVIAAEGEMNASRALKEASMV 240
++A + E +E++ + + V+ AEAE +RA+ EGE + +A +A +
Sbjct: 696 QSEAEKARKELLELEALSMAVESTGTAKAEAE----SRAEAARIEGEGSVLQAKLKAQAL 751
Query: 241 ITESPAALQ 249
E+ A LQ
Sbjct: 752 AIETEAELQ 760
>gi|19913412 major vault protein [Homo sapiens]
Length = 893
Score = 28.5 bits (62), Expect = 7.2
Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 129 ATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQST--------LDD 180
+++ V ++ D TR Q +++ + SQ + + E Q + D
Sbjct: 636 SSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILD 695
Query: 181 ATDAWGIKVERVEIKDVKLPVQLQRAMAAEAEASREARAKVIAAEGEMNASRALKEASMV 240
++A + E +E++ + + V+ AEAE +RA+ EGE + +A +A +
Sbjct: 696 QSEAEKARKELLELEALSMAVESTGTAKAEAE----SRAEAARIEGEGSVLQAKLKAQAL 751
Query: 241 ITESPAALQ 249
E+ A LQ
Sbjct: 752 AIETEAELQ 760
>gi|4504643 interleukin 12 receptor, beta 2 precursor [Homo sapiens]
Length = 862
Score = 28.5 bits (62), Expect = 7.2
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 124 YRVQNATLAVANITNADSATRLLA-QTTLRNVLGTKNLSQILSDREEIAHNMQSTLDDAT 182
Y Q +L N++ +++ ++L Q TL+ + G K ++Q ++ H +T+ T
Sbjct: 336 YSRQQISLFWKNLSVSEARGKILHYQVTLQELTGGKAMTQNIT-----GHTSWTTVIPRT 390
Query: 183 DAWGIKVERVEIKDVKLPVQLQRAMAAEA 211
W + V K LP ++ EA
Sbjct: 391 GNWAVAVSAANSKGSSLPTRINIMNLCEA 419
>gi|148762963 armadillo repeat containing 2 [Homo sapiens]
Length = 867
Score = 28.5 bits (62), Expect = 7.2
Identities = 19/107 (17%), Positives = 47/107 (43%)
Query: 64 IIFRLGRILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVVY 123
++ +L R+L A PG+ +L + + + T+ + + T +++ + Y
Sbjct: 603 VLIKLTRVLANIAIHPGVGPVLAANPGIVGLLLTTLEYKSLDDCEELVINATATINNLSY 662
Query: 124 YRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEI 170
Y+V+N+ + + A+ +LL + +L + LS ++
Sbjct: 663 YQVKNSIIQDKKLYIAELLLKLLVSNNMDGILEAVRVFGNLSQDHDV 709
>gi|45439306 aspartyl-tRNA synthetase [Homo sapiens]
Length = 501
Score = 28.5 bits (62), Expect = 7.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 188 KVERVEIKDVKLPVQLQRAMAAEAEASREARAKV 221
K+ + + + +LP+QL A+ EAE E RA V
Sbjct: 141 KIYVISLAEPRLPLQLDDAVRPEAEGEEEGRATV 174
>gi|227430303 CD109 antigen isoform 3 precursor [Homo sapiens]
Length = 1368
Score = 28.1 bits (61), Expect = 9.3
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 73 QGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVV 122
+G K +L TD+ ++ ++T+SF PP + + V I+ G V
Sbjct: 777 EGIEKSYSQSILLDLTDNRLQSTLKTLSFSFPPNTVTGSERVQITAIGDV 826
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,058,007
Number of Sequences: 37866
Number of extensions: 325838
Number of successful extensions: 938
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 912
Number of HSP's gapped (non-prelim): 36
length of query: 288
length of database: 18,247,518
effective HSP length: 101
effective length of query: 187
effective length of database: 14,423,052
effective search space: 2697110724
effective search space used: 2697110724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.