Guide to the Human Genome
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Name: STT3B Sequence: fasta or formatted (826aa) NCBI GI: 30578410
Description:

source of immunodominant MHC-associated peptides

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         65           3
 C cysteine            1.3         11           3
 D aspartate           4.0         33           2
 E glutamate           4.0         33           2
 F phenylalanine       6.5         54           3
 G glycine             7.0         58           2
 H histidine           3.1         26           2
 I isoleucine          6.3         52           2
 K lysine              5.2         43           2
 L leucine             9.4         78           3
 M methionine          3.0         25           2
 N asparagine          4.0         33           2
 P proline             4.1         34           2
 Q glutamine           2.4         20           1
 R arginine            4.6         38           1
 S serine              7.3         60           2
 T threonine           5.7         47           2
 V valine              6.5         54           2
 W tryptophan          2.7         22           2
 Y tyrosine            4.8         40           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   source of immunodominant MHC-associated peptides [Ho... 
STT3A                 0.503   integral membrane protein 1 
IRF7                  0.005   interferon regulatory factor 7 isoform d 
IRF7                  0.005   interferon regulatory factor 7 isoform a 
IRF7                  0.005   interferon regulatory factor 7 isoform b 
SALL3                 0.005   sal-like 3 
DDX11                 0.005   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso...
NPHS2                 0.005   podocin 
STOM                  0.005   stomatin isoform b 
LAMA1                 0.004   laminin, alpha 1 precursor 
STOM                  0.004   stomatin isoform a 
FTO                   0.004   fat mass and obesity associated 
STOML3                0.004   stomatin-like 3 isoform 2 
STOML3                0.004   stomatin-like 3 isoform 1 
LOC100287930          0.003   PREDICTED: similar to Putative uncharacterized prot...
TNKS                  0.003   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
IL17RB                0.003   interleukin 17B receptor precursor 
CHGB                  0.003   chromogranin B precursor 
ZCCHC14               0.003   zinc finger, CCHC domain containing 14 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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