Guide to the Human Genome
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Name: PHB Sequence: fasta or formatted (272aa) NCBI GI: 4505773
Description:

prohibitin

Referenced in:

Mitochondria
RB1 and Related Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         31           2
 C cysteine            0.4          1           1
 D aspartate           5.5         15           2
 E glutamate           7.4         20           1
 F phenylalanine       4.8         13           1
 G glycine             6.2         17           2
 H histidine           1.1          3           1
 I isoleucine          7.7         21           2
 K lysine              4.4         12           2
 L leucine             9.9         27           2
 M methionine          0.4          1           1
 N asparagine          2.6          7           1
 P proline             3.3          9           1
 Q glutamine           5.5         15           2
 R arginine            7.0         19           1
 S serine              6.2         17           1
 T threonine           5.1         14           2
 V valine              9.2         25           2
 W tryptophan          0.4          1           1
 Y tyrosine            1.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   prohibitin 
PHB2                  0.470   prohibitin 2 isoform 2 
PHB2                  0.470   prohibitin 2 isoform 1 
STOM                  0.047   stomatin isoform a 
LOC653203             0.016   PREDICTED: hypothetical protein 
STOML3                0.016   stomatin-like 3 isoform 2 
STOML3                0.016   stomatin-like 3 isoform 1 
PLEC1                 0.014   plectin 1 isoform 11 
PLEC1                 0.014   plectin 1 isoform 10 
PLEC1                 0.014   plectin 1 isoform 8 
PLEC1                 0.014   plectin 1 isoform 7 
PLEC1                 0.014   plectin 1 isoform 6 
PLEC1                 0.014   plectin 1 isoform 3 
PLEC1                 0.014   plectin 1 isoform 2 
PLEC1                 0.014   plectin 1 isoform 1 
DNAH1                 0.014   dynein, axonemal, heavy chain 1 
LOC727962             0.012   PREDICTED: similar to collagen, type I, alpha 2 [Ho...
EVPL                  0.012   envoplakin 
CALCOCO1              0.008   coiled-coil transcriptional coactivator isoform 2 [...
ARGLU1                0.008   arginine and glutamate rich 1 
CNTLN                 0.008   centlein isoform 1 
CNTLN                 0.008   centlein isoform 2 
STOML2                0.008   stomatin (EPB72)-like 2 
EPC1                  0.006   enhancer of polycomb 1 
EFR3B                 0.006   EFR3 homolog B 
FAM134A               0.006   hypothetical protein LOC79137 
PPP1R12A              0.006   protein phosphatase 1, regulatory (inhibitor) subun...
PPP1R12A              0.006   protein phosphatase 1, regulatory (inhibitor) subun...
PPP1R12A              0.006   protein phosphatase 1, regulatory (inhibitor) subunit...
C1orf125              0.006   hypothetical protein LOC126859 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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