Search of human proteins with 37622903

Search of human proteins with 37622903

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|37622903 TSC22 domain family, member 3 isoform 1 [Homo
sapiens]
         (200 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|37622903 TSC22 domain family, member 3 isoform 1 [Homo sapiens]    401   e-112
gi|37622901 TSC22 domain family, member 3 isoform 2 [Homo sapiens]    183   1e-46
gi|62865625 TSC22 domain family, member 3 isoform 3 [Homo sapiens]    153   1e-37
gi|5174729 TSC22 domain family, member 1 isoform 2 [Homo sapiens]     125   2e-29
gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens]   125   3e-29
gi|7662236 TSC22 domain family, member 2 [Homo sapiens]               107   5e-24
gi|13569901 TSC22 domain family, member 4 [Homo sapiens]              104   4e-23
gi|33946313 ninein isoform 4 [Homo sapiens]                            35   0.043
gi|33946321 ninein isoform 5 [Homo sapiens]                            35   0.043
gi|148536871 ninein isoform 1 [Homo sapiens]                           35   0.043
gi|148536869 ninein isoform 2 [Homo sapiens]                           35   0.043
gi|38570109 CAP-binding protein complex interacting protein 1 is...    34   0.073
gi|38570107 CAP-binding protein complex interacting protein 1 is...    34   0.073
gi|57242777 c-myc binding protein [Homo sapiens]                       33   0.16 
gi|9966805 DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Homo sapiens]    33   0.21 
gi|28460688 taxilin [Homo sapiens]                                     32   0.36 
gi|116686122 kinesin family member 4 [Homo sapiens]                    31   0.61 
gi|55769533 PRKC, apoptosis, WT1, regulator [Homo sapiens]             31   0.80 
gi|120431745 huntingtin-associated protein 1 isoform 4 [Homo sap...    31   0.80 
gi|120431743 huntingtin-associated protein 1 isoform 3 [Homo sap...    31   0.80 
gi|120431738 huntingtin-associated protein 1 isoform 2 [Homo sap...    31   0.80 
gi|4759344 centromere/kinetochore protein zw10 [Homo sapiens]          31   0.80 
gi|31563330 A-kinase anchor protein 13 isoform 1 [Homo sapiens]        31   0.80 
gi|21493031 A-kinase anchor protein 13 isoform 3 [Homo sapiens]        31   0.80 
gi|21493029 A-kinase anchor protein 13 isoform 2 [Homo sapiens]        31   0.80 
gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo...    31   0.80 
gi|4503593 epidermal growth factor receptor pathway substrate 15...    30   1.0  
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa...    30   1.0  
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s...    30   1.0  
gi|60498973 myelin transcription factor 1-like [Homo sapiens]          30   1.0  

>gi|37622903 TSC22 domain family, member 3 isoform 1 [Homo sapiens]
          Length = 200

 Score =  401 bits (1031), Expect = e-112
 Identities = 200/200 (100%), Positives = 200/200 (100%)

Query: 1   MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL 60
           MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
Sbjct: 1   MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL 60

Query: 61  NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI 120
           NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
Sbjct: 61  NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI 120

Query: 121 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS 180
           EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
Sbjct: 121 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS 180

Query: 181 PEEPAPESPQVPEAPGGSAV 200
           PEEPAPESPQVPEAPGGSAV
Sbjct: 181 PEEPAPESPQVPEAPGGSAV 200


>gi|37622901 TSC22 domain family, member 3 isoform 2 [Homo sapiens]
          Length = 134

 Score =  183 bits (464), Expect = 1e-46
 Identities = 94/95 (98%), Positives = 95/95 (100%)

Query: 106 HSASGASVVAIDNKIEQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKT 165
           +SASGASVVAIDNKIEQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKT
Sbjct: 40  NSASGASVVAIDNKIEQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKT 99

Query: 166 LASPEQLEKFQSCLSPEEPAPESPQVPEAPGGSAV 200
           LASPEQLEKFQSCLSPEEPAPESPQVPEAPGGSAV
Sbjct: 100 LASPEQLEKFQSCLSPEEPAPESPQVPEAPGGSAV 134


>gi|62865625 TSC22 domain family, member 3 isoform 3 [Homo sapiens]
          Length = 77

 Score =  153 bits (386), Expect = 1e-37
 Identities = 77/77 (100%), Positives = 77/77 (100%)

Query: 124 MDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEE 183
           MDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEE
Sbjct: 1   MDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEE 60

Query: 184 PAPESPQVPEAPGGSAV 200
           PAPESPQVPEAPGGSAV
Sbjct: 61  PAPESPQVPEAPGGSAV 77


>gi|5174729 TSC22 domain family, member 1 isoform 2 [Homo sapiens]
          Length = 144

 Score =  125 bits (314), Expect = 2e-29
 Identities = 67/91 (73%), Positives = 77/91 (84%), Gaps = 1/91 (1%)

Query: 106 HSASGASVVAIDNKIEQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKT 165
           +S+SGASVVAIDNKIEQAMDLVK+HLMYAVREEVE+LKEQI+EL+EKNSQLE+EN LLKT
Sbjct: 41  NSSSGASVVAIDNKIEQAMDLVKSHLMYAVREEVEVLKEQIKELIEKNSQLEQENNLLKT 100

Query: 166 LASPEQLEKFQSCL-SPEEPAPESPQVPEAP 195
           LASPEQL +FQ+ L +   PA   PQ    P
Sbjct: 101 LASPEQLAQFQAQLQTGSPPATTQPQGTTQP 131


>gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens]
          Length = 1073

 Score =  125 bits (313), Expect = 3e-29
 Identities = 67/90 (74%), Positives = 76/90 (84%), Gaps = 1/90 (1%)

Query: 107  SASGASVVAIDNKIEQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTL 166
            S+SGASVVAIDNKIEQAMDLVK+HLMYAVREEVE+LKEQI+EL+EKNSQLE+EN LLKTL
Sbjct: 971  SSSGASVVAIDNKIEQAMDLVKSHLMYAVREEVEVLKEQIKELIEKNSQLEQENNLLKTL 1030

Query: 167  ASPEQLEKFQSCL-SPEEPAPESPQVPEAP 195
            ASPEQL +FQ+ L +   PA   PQ    P
Sbjct: 1031 ASPEQLAQFQAQLQTGSPPATTQPQGTTQP 1060


>gi|7662236 TSC22 domain family, member 2 [Homo sapiens]
          Length = 780

 Score =  107 bits (268), Expect = 5e-24
 Identities = 61/105 (58%), Positives = 73/105 (69%), Gaps = 14/105 (13%)

Query: 107 SASGASVVAIDNKIEQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTL 166
           SASG  VVAIDNKIEQAMDLVK+HLMYAVREEVE+LKEQI+ELVE+NS LEREN LLK+L
Sbjct: 677 SASGGGVVAIDNKIEQAMDLVKSHLMYAVREEVEVLKEQIKELVERNSLLERENALLKSL 736

Query: 167 ASPEQLEKF------------QSCLSPEEPAPESPQVPEAPGGSA 199
           +S +QL +             Q  +  + P P  P  P+ P  S+
Sbjct: 737 SSNDQLSQLPTQQANPGSTSQQQAVIAQPPQPTQP--PQQPNVSS 779


>gi|13569901 TSC22 domain family, member 4 [Homo sapiens]
          Length = 395

 Score =  104 bits (260), Expect = 4e-23
 Identities = 58/87 (66%), Positives = 67/87 (77%), Gaps = 3/87 (3%)

Query: 107 SASGASVVAIDNKIEQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTL 166
           S SG S+V IDNKIEQAMDLVK+HLM+AVREEVE+LKEQIREL E+N+ LE+EN LL+ L
Sbjct: 310 SGSG-SLVGIDNKIEQAMDLVKSHLMFAVREEVEVLKEQIRELAERNAALEQENGLLRAL 368

Query: 167 ASPEQLEKFQSCLSPE--EPAPESPQV 191
           ASPEQL +  S   P    PAP  P V
Sbjct: 369 ASPEQLAQLPSSGVPRLGPPAPNGPSV 395


>gi|33946313 ninein isoform 4 [Homo sapiens]
          Length = 2096

 Score = 35.0 bits (79), Expect = 0.043
 Identities = 23/43 (53%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 134  AVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQ 176
            AV++ VE LK+QI EL  KN QL+ ENT L    S  Q EK Q
Sbjct: 1573 AVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQ-EKLQ 1614


>gi|33946321 ninein isoform 5 [Homo sapiens]
          Length = 2090

 Score = 35.0 bits (79), Expect = 0.043
 Identities = 23/43 (53%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 134  AVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQ 176
            AV++ VE LK+QI EL  KN QL+ ENT L    S  Q EK Q
Sbjct: 1567 AVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQ-EKLQ 1608


>gi|148536871 ninein isoform 1 [Homo sapiens]
          Length = 2046

 Score = 35.0 bits (79), Expect = 0.043
 Identities = 23/43 (53%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 134  AVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQ 176
            AV++ VE LK+QI EL  KN QL+ ENT L    S  Q EK Q
Sbjct: 1567 AVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQ-EKLQ 1608


>gi|148536869 ninein isoform 2 [Homo sapiens]
          Length = 2133

 Score = 35.0 bits (79), Expect = 0.043
 Identities = 23/43 (53%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 134  AVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQ 176
            AV++ VE LK+QI EL  KN QL+ ENT L    S  Q EK Q
Sbjct: 1567 AVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQ-EKLQ 1608


>gi|38570109 CAP-binding protein complex interacting protein 1
           isoform b [Homo sapiens]
          Length = 1349

 Score = 34.3 bits (77), Expect = 0.073
 Identities = 15/49 (30%), Positives = 29/49 (59%)

Query: 137 EEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEEPA 185
           E ++  ++Q  +L E+    E + TL K + + E +EKF+ C+  ++PA
Sbjct: 438 EHLQKDEQQQPDLSERTKLTEDKTTLTKKMTTEEVIEKFKKCIQQQDPA 486


>gi|38570107 CAP-binding protein complex interacting protein 1
           isoform a [Homo sapiens]
          Length = 1501

 Score = 34.3 bits (77), Expect = 0.073
 Identities = 15/49 (30%), Positives = 29/49 (59%)

Query: 137 EEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEEPA 185
           E ++  ++Q  +L E+    E + TL K + + E +EKF+ C+  ++PA
Sbjct: 590 EHLQKDEQQQPDLSERTKLTEDKTTLTKKMTTEEVIEKFKKCIQQQDPA 638


>gi|57242777 c-myc binding protein [Homo sapiens]
          Length = 103

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 119 KIEQAMDLVKNHLMYAVRE--EVEILKEQIRELVEKNSQLERENTLLKTLAS---PEQLE 173
           K   A+D +K+HL  A  E  E+E+L+ ++ E+ EK   +  EN  LK   +   P Q E
Sbjct: 40  KPNSALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQYEPPQEE 99

Query: 174 K 174
           K
Sbjct: 100 K 100


>gi|9966805 DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Homo sapiens]
          Length = 859

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 17/72 (23%)

Query: 136 REEVEILKEQIRELVEKNSQLERENTLLKT--------LASPEQLEKFQSCLS------- 180
           ++++++LK+++R L+ +    E + T   T        +++P + E   SCLS       
Sbjct: 782 QKQMKVLKKELRHLLSQPLFTESQKTKYPTQSGKPPLLVSAPSKSESALSCLSKQKKKKT 841

Query: 181 --PEEPAPESPQ 190
             P+EP PE PQ
Sbjct: 842 KKPKEPQPEQPQ 853


>gi|28460688 taxilin [Homo sapiens]
          Length = 546

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 11/154 (7%)

Query: 28  GLQRGSSGENNNPGSPTVSNFRQLQEKLVFENLNTDKLNSIMRQDSLEPVLRDPCYLINE 87
           G+QR    E         S+F+     +  +    ++ NS +RQ+++E   R    +   
Sbjct: 259 GVQRAREEEEKR--KEVTSHFQVTLNDIQLQMEQHNERNSKLRQENMELAERLKKLIEQY 316

Query: 88  GICNRNIDQTMLSILLFFHSASGASVVAIDNKIEQAMDLVKNHLMYAVREEVEILKEQIR 147
            +   +ID+      +F H      +V  D K++QA +++K       RE+  +LKE + 
Sbjct: 317 ELREEHIDK------VFKHKDLQQQLV--DAKLQQAQEMLKEAEERHQREKDFLLKEAVE 368

Query: 148 ELVEKNSQLERENTLLKTLA-SPEQLEKFQSCLS 180
                    ++E  L + LA   E+ E+FQ+ LS
Sbjct: 369 SQRMCELMKQQETHLKQQLALYTEKFEEFQNTLS 402


>gi|116686122 kinesin family member 4 [Homo sapiens]
          Length = 1232

 Score = 31.2 bits (69), Expect = 0.61
 Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 9/84 (10%)

Query: 117  DNKIEQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLEREN-------TLLKTLASP 169
            + ++E+++   +  L+  ++ + E L E++RE+ E+N QL REN       TLL+  +  
Sbjct: 945  EKQLEESVSEKEQQLLSTLKCQDEEL-EKMREVCEQNQQLLRENEIIKQKLTLLQVASRQ 1003

Query: 170  EQLEKFQSCLSPEEPAPESPQVPE 193
            + L K  + LSP+      P  P+
Sbjct: 1004 KHLPK-DTLLSPDSSFEYVPPKPK 1026


>gi|55769533 PRKC, apoptosis, WT1, regulator [Homo sapiens]
          Length = 340

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 13/40 (32%), Positives = 28/40 (70%), Gaps = 1/40 (2%)

Query: 128 KNHLMYAVREEVEILKEQIRELVEKNSQLEREN-TLLKTL 166
           K  ++  ++EE+++L   + ++ ++N QL++EN TLLK +
Sbjct: 296 KEEMIGKLKEEIDLLNRDLDDIEDENEQLKQENKTLLKVV 335


>gi|120431745 huntingtin-associated protein 1 isoform 4 [Homo
           sapiens]
          Length = 594

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 138 EVEILKEQIRELVEKNSQLERENTLLKTLASPEQL 172
           ++E L+E++R L E+N QL  E + L TL   EQ+
Sbjct: 313 QLEALQEKLRLLEEENHQLREEASQLDTLEDEEQM 347


>gi|120431743 huntingtin-associated protein 1 isoform 3 [Homo
           sapiens]
          Length = 602

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 138 EVEILKEQIRELVEKNSQLERENTLLKTLASPEQL 172
           ++E L+E++R L E+N QL  E + L TL   EQ+
Sbjct: 321 QLEALQEKLRLLEEENHQLREEASQLDTLEDEEQM 355


>gi|120431738 huntingtin-associated protein 1 isoform 2 [Homo
           sapiens]
          Length = 619

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 138 EVEILKEQIRELVEKNSQLERENTLLKTLASPEQL 172
           ++E L+E++R L E+N QL  E + L TL   EQ+
Sbjct: 313 QLEALQEKLRLLEEENHQLREEASQLDTLEDEEQM 347


>gi|4759344 centromere/kinetochore protein zw10 [Homo sapiens]
          Length = 779

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 89  ICNRNIDQTMLSILLFFHSASGASVVAIDNKIEQAMDLVKNHLMYAVREEVEILKEQIRE 148
           +CN  I +     L    SA G  +  +D K+ + +DL+K+ +   VR ++ +      E
Sbjct: 38  VCNM-ISKKYSEFLPSMQSAQGL-ITQVD-KLSEDIDLLKSRIESEVRRDLHV---STGE 91

Query: 149 LVEKNSQLERENTLLKTLASPEQLEKFQSCL 179
             +   QLER++ +L  L   +QL++F + +
Sbjct: 92  FTDLKQQLERDSVVLSLL---KQLQEFSTAI 119


>gi|31563330 A-kinase anchor protein 13 isoform 1 [Homo sapiens]
          Length = 2817

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 134  AVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEEPAPESPQVPE 193
            A ++++E  +EQ+R   E+ SQ + E  L +      +L +  S      P+PE P  P 
Sbjct: 2660 AAQKQLEREQEQLRREAERLSQRQTERDLCQVSHPHTKLMRIPSFF----PSPEEPPSPS 2715

Query: 194  AP 195
            AP
Sbjct: 2716 AP 2717


>gi|21493031 A-kinase anchor protein 13 isoform 3 [Homo sapiens]
          Length = 1058

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 134 AVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEEPAPESPQVPE 193
           A ++++E  +EQ+R   E+ SQ + E  L +      +L +  S      P+PE P  P 
Sbjct: 901 AAQKQLEREQEQLRREAERLSQRQTERDLCQVSHPHTKLMRIPSFF----PSPEEPPSPS 956

Query: 194 AP 195
           AP
Sbjct: 957 AP 958


>gi|21493029 A-kinase anchor protein 13 isoform 2 [Homo sapiens]
          Length = 2813

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 134  AVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEEPAPESPQVPE 193
            A ++++E  +EQ+R   E+ SQ + E  L +      +L +  S      P+PE P  P 
Sbjct: 2656 AAQKQLEREQEQLRREAERLSQRQTERDLCQVSHPHTKLMRIPSFF----PSPEEPPSPS 2711

Query: 194  AP 195
            AP
Sbjct: 2712 AP 2713


>gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo
            sapiens]
          Length = 2168

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 122  QAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQS--CL 179
            Q M L+K        EE E LK++ R+    N + + E   L+ L   ++L+K     CL
Sbjct: 1010 QHMMLMKAMEARKKAEEKERLKQEKRDEKRLNKERKLEQRRLE-LEMAKELKKPNEDMCL 1068

Query: 180  SPEEPAPESPQVP 192
            + ++P PE P++P
Sbjct: 1069 ADQKPLPELPRIP 1081


>gi|4503593 epidermal growth factor receptor pathway substrate 15
           isoform A [Homo sapiens]
          Length = 896

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 16/66 (24%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 108 ASGASVVAIDNKIEQAMDLV--KNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKT 165
           A  +++  +D    + +DL   KN++   ++E+ + +K++  E+ +   +++RENT L+ 
Sbjct: 327 ADFSAIKELDTLNNEIVDLQREKNNVEQDLKEKEDTIKQRTSEVQDLQDEVQRENTNLQK 386

Query: 166 LASPEQ 171
           L + +Q
Sbjct: 387 LQAQKQ 392


>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
           sapiens]
          Length = 1843

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 8/63 (12%)

Query: 128 KNHLMYAVREEVEILKEQIRELVEKNSQLEREN-TLLKTLAS-------PEQLEKFQSCL 179
           +N L+      ++I  E+I  L ++NS+LEREN  L KTL S        E LEK  S L
Sbjct: 640 ENELLQKKITNLKITCEKIEALEQENSELERENRKLKKTLDSFKNLTFQLESLEKENSQL 699

Query: 180 SPE 182
             E
Sbjct: 700 DEE 702


>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
           sapiens]
          Length = 1870

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 8/63 (12%)

Query: 128 KNHLMYAVREEVEILKEQIRELVEKNSQLEREN-TLLKTLAS-------PEQLEKFQSCL 179
           +N L+      ++I  E+I  L ++NS+LEREN  L KTL S        E LEK  S L
Sbjct: 640 ENELLQKKITNLKITCEKIEALEQENSELERENRKLKKTLDSFKNLTFQLESLEKENSQL 699

Query: 180 SPE 182
             E
Sbjct: 700 DEE 702


>gi|60498973 myelin transcription factor 1-like [Homo sapiens]
          Length = 1184

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 137  EEVEILKEQIRELVEKNSQLERENTLLKT 165
            EE++ L E+I+EL E NSQ+E +   L+T
Sbjct: 1061 EEIKQLDEEIKELNESNSQMEADMIKLRT 1089


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,347,014
Number of Sequences: 37866
Number of extensions: 377225
Number of successful extensions: 2447
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 2351
Number of HSP's gapped (non-prelim): 151
length of query: 200
length of database: 18,247,518
effective HSP length: 97
effective length of query: 103
effective length of database: 14,574,516
effective search space: 1501175148
effective search space used: 1501175148
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.