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Search of human proteins with 37622901
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|37622901 TSC22 domain family, member 3 isoform 2 [Homo
sapiens]
(134 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|37622901 TSC22 domain family, member 3 isoform 2 [Homo sapiens] 261 2e-70
gi|37622903 TSC22 domain family, member 3 isoform 1 [Homo sapiens] 183 4e-47
gi|5174729 TSC22 domain family, member 1 isoform 2 [Homo sapiens] 162 6e-41
gi|62865625 TSC22 domain family, member 3 isoform 3 [Homo sapiens] 153 5e-38
gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens] 127 3e-30
gi|13569901 TSC22 domain family, member 4 [Homo sapiens] 108 1e-24
gi|7662236 TSC22 domain family, member 2 [Homo sapiens] 108 1e-24
gi|33946313 ninein isoform 4 [Homo sapiens] 38 0.002
gi|33946321 ninein isoform 5 [Homo sapiens] 38 0.002
gi|148536871 ninein isoform 1 [Homo sapiens] 38 0.002
gi|148536869 ninein isoform 2 [Homo sapiens] 38 0.002
gi|38570109 CAP-binding protein complex interacting protein 1 is... 34 0.031
gi|38570107 CAP-binding protein complex interacting protein 1 is... 34 0.031
gi|57242777 c-myc binding protein [Homo sapiens] 33 0.069
gi|115495445 ankyrin repeat domain 30A [Homo sapiens] 33 0.089
gi|9966805 DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Homo sapiens] 33 0.089
gi|116686122 kinesin family member 4 [Homo sapiens] 31 0.26
gi|55769533 PRKC, apoptosis, WT1, regulator [Homo sapiens] 31 0.34
gi|120431745 huntingtin-associated protein 1 isoform 4 [Homo sap... 31 0.34
gi|120431743 huntingtin-associated protein 1 isoform 3 [Homo sap... 31 0.34
gi|120431738 huntingtin-associated protein 1 isoform 2 [Homo sap... 31 0.34
gi|31563330 A-kinase anchor protein 13 isoform 1 [Homo sapiens] 31 0.34
gi|21493031 A-kinase anchor protein 13 isoform 3 [Homo sapiens] 31 0.34
gi|21493029 A-kinase anchor protein 13 isoform 2 [Homo sapiens] 31 0.34
gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo... 31 0.34
gi|4503593 epidermal growth factor receptor pathway substrate 15... 30 0.44
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa... 30 0.44
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s... 30 0.44
gi|4759344 centromere/kinetochore protein zw10 [Homo sapiens] 30 0.44
gi|60498973 myelin transcription factor 1-like [Homo sapiens] 30 0.44
>gi|37622901 TSC22 domain family, member 3 isoform 2 [Homo sapiens]
Length = 134
Score = 261 bits (666), Expect = 2e-70
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MNTEMYQTPMEVAVYQLHNFSISFFSSLLGGDVVSVKLDNSASGASVVAIDNKIEQAMDL 60
MNTEMYQTPMEVAVYQLHNFSISFFSSLLGGDVVSVKLDNSASGASVVAIDNKIEQAMDL
Sbjct: 1 MNTEMYQTPMEVAVYQLHNFSISFFSSLLGGDVVSVKLDNSASGASVVAIDNKIEQAMDL 60
Query: 61 VKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEEPAP 120
VKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEEPAP
Sbjct: 61 VKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEEPAP 120
Query: 121 ESPQVPEAPGGSAV 134
ESPQVPEAPGGSAV
Sbjct: 121 ESPQVPEAPGGSAV 134
>gi|37622903 TSC22 domain family, member 3 isoform 1 [Homo sapiens]
Length = 200
Score = 183 bits (464), Expect = 4e-47
Identities = 94/95 (98%), Positives = 95/95 (100%)
Query: 40 NSASGASVVAIDNKIEQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKT 99
+SASGASVVAIDNKIEQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKT
Sbjct: 106 HSASGASVVAIDNKIEQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKT 165
Query: 100 LASPEQLEKFQSCLSPEEPAPESPQVPEAPGGSAV 134
LASPEQLEKFQSCLSPEEPAPESPQVPEAPGGSAV
Sbjct: 166 LASPEQLEKFQSCLSPEEPAPESPQVPEAPGGSAV 200
>gi|5174729 TSC22 domain family, member 1 isoform 2 [Homo sapiens]
Length = 144
Score = 162 bits (411), Expect = 6e-41
Identities = 87/121 (71%), Positives = 101/121 (83%), Gaps = 1/121 (0%)
Query: 10 MEVAVYQLHNFSISFFSSLLGGDVVSVKLDNSASGASVVAIDNKIEQAMDLVKNHLMYAV 69
M++ VYQL +FSISF SSLLG + SV+LDNS+SGASVVAIDNKIEQAMDLVK+HLMYAV
Sbjct: 11 MDLGVYQLRHFSISFLSSLLGTENASVRLDNSSSGASVVAIDNKIEQAMDLVKSHLMYAV 70
Query: 70 REEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCL-SPEEPAPESPQVPEA 128
REEVE+LKEQI+EL+EKNSQLE+EN LLKTLASPEQL +FQ+ L + PA PQ
Sbjct: 71 REEVEVLKEQIKELIEKNSQLEQENNLLKTLASPEQLAQFQAQLQTGSPPATTQPQGTTQ 130
Query: 129 P 129
P
Sbjct: 131 P 131
>gi|62865625 TSC22 domain family, member 3 isoform 3 [Homo sapiens]
Length = 77
Score = 153 bits (386), Expect = 5e-38
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 58 MDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEE 117
MDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEE
Sbjct: 1 MDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEE 60
Query: 118 PAPESPQVPEAPGGSAV 134
PAPESPQVPEAPGGSAV
Sbjct: 61 PAPESPQVPEAPGGSAV 77
>gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens]
Length = 1073
Score = 127 bits (319), Expect = 3e-30
Identities = 68/92 (73%), Positives = 77/92 (83%), Gaps = 1/92 (1%)
Query: 39 DNSASGASVVAIDNKIEQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLK 98
D S+SGASVVAIDNKIEQAMDLVK+HLMYAVREEVE+LKEQI+EL+EKNSQLE+EN LLK
Sbjct: 969 DESSSGASVVAIDNKIEQAMDLVKSHLMYAVREEVEVLKEQIKELIEKNSQLEQENNLLK 1028
Query: 99 TLASPEQLEKFQSCL-SPEEPAPESPQVPEAP 129
TLASPEQL +FQ+ L + PA PQ P
Sbjct: 1029 TLASPEQLAQFQAQLQTGSPPATTQPQGTTQP 1060
>gi|13569901 TSC22 domain family, member 4 [Homo sapiens]
Length = 395
Score = 108 bits (271), Expect = 1e-24
Identities = 61/123 (49%), Positives = 80/123 (65%), Gaps = 5/123 (4%)
Query: 5 MYQTPMEVAVYQLHNFSISFFSSLLGGDVVSVKLDNSASGASVVAIDNKIEQAMDLVKNH 64
++++P FS++ + G + S D+ + S+V IDNKIEQAMDLVK+H
Sbjct: 276 VHKSPDPFGAVAAQKFSLAHSMLAISGHLDS---DDDSGSGSLVGIDNKIEQAMDLVKSH 332
Query: 65 LMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPE--EPAPES 122
LM+AVREEVE+LKEQIREL E+N+ LE+EN LL+ LASPEQL + S P PAP
Sbjct: 333 LMFAVREEVEVLKEQIRELAERNAALEQENGLLRALASPEQLAQLPSSGVPRLGPPAPNG 392
Query: 123 PQV 125
P V
Sbjct: 393 PSV 395
>gi|7662236 TSC22 domain family, member 2 [Homo sapiens]
Length = 780
Score = 108 bits (271), Expect = 1e-24
Identities = 63/111 (56%), Positives = 76/111 (68%), Gaps = 14/111 (12%)
Query: 35 SVKLDNSASGASVVAIDNKIEQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLEREN 94
S L +SASG VVAIDNKIEQAMDLVK+HLMYAVREEVE+LKEQI+ELVE+NS LEREN
Sbjct: 671 SKSLWDSASGGGVVAIDNKIEQAMDLVKSHLMYAVREEVEVLKEQIKELVERNSLLEREN 730
Query: 95 TLLKTLASPEQLEKF------------QSCLSPEEPAPESPQVPEAPGGSA 133
LLK+L+S +QL + Q + + P P P P+ P S+
Sbjct: 731 ALLKSLSSNDQLSQLPTQQANPGSTSQQQAVIAQPPQPTQP--PQQPNVSS 779
>gi|33946313 ninein isoform 4 [Homo sapiens]
Length = 2096
Score = 38.1 bits (87), Expect = 0.002
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 26 SSLLGGDVVSVKLDNSASGASVVAIDNKIE---QAMDLVKNHLMYAVREEVEILKEQIRE 82
+S+L ++ ++ ++S S + ++ E Q + VK AV++ VE LK+QI E
Sbjct: 1529 NSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENA-AVQKMVENLKKQISE 1587
Query: 83 LVEKNSQLERENTLLKTLASPEQLEKFQ 110
L KN QL+ ENT L S Q EK Q
Sbjct: 1588 LKIKNQQLDLENTELSQKNSQNQ-EKLQ 1614
>gi|33946321 ninein isoform 5 [Homo sapiens]
Length = 2090
Score = 38.1 bits (87), Expect = 0.002
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 26 SSLLGGDVVSVKLDNSASGASVVAIDNKIE---QAMDLVKNHLMYAVREEVEILKEQIRE 82
+S+L ++ ++ ++S S + ++ E Q + VK AV++ VE LK+QI E
Sbjct: 1523 NSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENA-AVQKMVENLKKQISE 1581
Query: 83 LVEKNSQLERENTLLKTLASPEQLEKFQ 110
L KN QL+ ENT L S Q EK Q
Sbjct: 1582 LKIKNQQLDLENTELSQKNSQNQ-EKLQ 1608
>gi|148536871 ninein isoform 1 [Homo sapiens]
Length = 2046
Score = 38.1 bits (87), Expect = 0.002
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 26 SSLLGGDVVSVKLDNSASGASVVAIDNKIE---QAMDLVKNHLMYAVREEVEILKEQIRE 82
+S+L ++ ++ ++S S + ++ E Q + VK AV++ VE LK+QI E
Sbjct: 1523 NSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENA-AVQKMVENLKKQISE 1581
Query: 83 LVEKNSQLERENTLLKTLASPEQLEKFQ 110
L KN QL+ ENT L S Q EK Q
Sbjct: 1582 LKIKNQQLDLENTELSQKNSQNQ-EKLQ 1608
>gi|148536869 ninein isoform 2 [Homo sapiens]
Length = 2133
Score = 38.1 bits (87), Expect = 0.002
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 26 SSLLGGDVVSVKLDNSASGASVVAIDNKIE---QAMDLVKNHLMYAVREEVEILKEQIRE 82
+S+L ++ ++ ++S S + ++ E Q + VK AV++ VE LK+QI E
Sbjct: 1523 NSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENA-AVQKMVENLKKQISE 1581
Query: 83 LVEKNSQLERENTLLKTLASPEQLEKFQ 110
L KN QL+ ENT L S Q EK Q
Sbjct: 1582 LKIKNQQLDLENTELSQKNSQNQ-EKLQ 1608
>gi|38570109 CAP-binding protein complex interacting protein 1
isoform b [Homo sapiens]
Length = 1349
Score = 34.3 bits (77), Expect = 0.031
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 71 EEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEEPA 119
E ++ ++Q +L E+ E + TL K + + E +EKF+ C+ ++PA
Sbjct: 438 EHLQKDEQQQPDLSERTKLTEDKTTLTKKMTTEEVIEKFKKCIQQQDPA 486
>gi|38570107 CAP-binding protein complex interacting protein 1
isoform a [Homo sapiens]
Length = 1501
Score = 34.3 bits (77), Expect = 0.031
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 71 EEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEEPA 119
E ++ ++Q +L E+ E + TL K + + E +EKF+ C+ ++PA
Sbjct: 590 EHLQKDEQQQPDLSERTKLTEDKTTLTKKMTTEEVIEKFKKCIQQQDPA 638
>gi|57242777 c-myc binding protein [Homo sapiens]
Length = 103
Score = 33.1 bits (74), Expect = 0.069
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 53 KIEQAMDLVKNHLMYAVRE--EVEILKEQIRELVEKNSQLERENTLLKTLAS---PEQLE 107
K A+D +K+HL A E E+E+L+ ++ E+ EK + EN LK + P Q E
Sbjct: 40 KPNSALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQYEPPQEE 99
Query: 108 K 108
K
Sbjct: 100 K 100
>gi|115495445 ankyrin repeat domain 30A [Homo sapiens]
Length = 1341
Score = 32.7 bits (73), Expect = 0.089
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 32 DVVSVKLDNSASGASVVAIDNKIEQAMDLVKNHL------MYAVREEVEILKEQIRELVE 85
D +S KL++S S + ++ + E+A +L K+H M ++++ +LK+++ E E
Sbjct: 893 DKISGKLEDSTSLSKILDTVHSCERARELQKDHCEQRTGKMEQMKKKFCVLKKKLSEAKE 952
Query: 86 KNSQLERE 93
SQLE +
Sbjct: 953 IKSQLENQ 960
>gi|9966805 DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Homo sapiens]
Length = 859
Score = 32.7 bits (73), Expect = 0.089
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 17/72 (23%)
Query: 70 REEVEILKEQIRELVEKNSQLERENTLLKT--------LASPEQLEKFQSCLS------- 114
++++++LK+++R L+ + E + T T +++P + E SCLS
Sbjct: 782 QKQMKVLKKELRHLLSQPLFTESQKTKYPTQSGKPPLLVSAPSKSESALSCLSKQKKKKT 841
Query: 115 --PEEPAPESPQ 124
P+EP PE PQ
Sbjct: 842 KKPKEPQPEQPQ 853
>gi|116686122 kinesin family member 4 [Homo sapiens]
Length = 1232
Score = 31.2 bits (69), Expect = 0.26
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 51 DNKIEQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLEREN-------TLLKTLASP 103
+ ++E+++ + L+ ++ + E L E++RE+ E+N QL REN TLL+ +
Sbjct: 945 EKQLEESVSEKEQQLLSTLKCQDEEL-EKMREVCEQNQQLLRENEIIKQKLTLLQVASRQ 1003
Query: 104 EQLEKFQSCLSPEEPAPESPQVPE 127
+ L K + LSP+ P P+
Sbjct: 1004 KHLPK-DTLLSPDSSFEYVPPKPK 1026
>gi|55769533 PRKC, apoptosis, WT1, regulator [Homo sapiens]
Length = 340
Score = 30.8 bits (68), Expect = 0.34
Identities = 13/40 (32%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 62 KNHLMYAVREEVEILKEQIRELVEKNSQLEREN-TLLKTL 100
K ++ ++EE+++L + ++ ++N QL++EN TLLK +
Sbjct: 296 KEEMIGKLKEEIDLLNRDLDDIEDENEQLKQENKTLLKVV 335
>gi|120431745 huntingtin-associated protein 1 isoform 4 [Homo
sapiens]
Length = 594
Score = 30.8 bits (68), Expect = 0.34
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 72 EVEILKEQIRELVEKNSQLERENTLLKTLASPEQL 106
++E L+E++R L E+N QL E + L TL EQ+
Sbjct: 313 QLEALQEKLRLLEEENHQLREEASQLDTLEDEEQM 347
>gi|120431743 huntingtin-associated protein 1 isoform 3 [Homo
sapiens]
Length = 602
Score = 30.8 bits (68), Expect = 0.34
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 72 EVEILKEQIRELVEKNSQLERENTLLKTLASPEQL 106
++E L+E++R L E+N QL E + L TL EQ+
Sbjct: 321 QLEALQEKLRLLEEENHQLREEASQLDTLEDEEQM 355
>gi|120431738 huntingtin-associated protein 1 isoform 2 [Homo
sapiens]
Length = 619
Score = 30.8 bits (68), Expect = 0.34
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 72 EVEILKEQIRELVEKNSQLERENTLLKTLASPEQL 106
++E L+E++R L E+N QL E + L TL EQ+
Sbjct: 313 QLEALQEKLRLLEEENHQLREEASQLDTLEDEEQM 347
>gi|31563330 A-kinase anchor protein 13 isoform 1 [Homo sapiens]
Length = 2817
Score = 30.8 bits (68), Expect = 0.34
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 68 AVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEEPAPESPQVPE 127
A ++++E +EQ+R E+ SQ + E L + +L + S P+PE P P
Sbjct: 2660 AAQKQLEREQEQLRREAERLSQRQTERDLCQVSHPHTKLMRIPSFF----PSPEEPPSPS 2715
Query: 128 AP 129
AP
Sbjct: 2716 AP 2717
>gi|21493031 A-kinase anchor protein 13 isoform 3 [Homo sapiens]
Length = 1058
Score = 30.8 bits (68), Expect = 0.34
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 68 AVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEEPAPESPQVPE 127
A ++++E +EQ+R E+ SQ + E L + +L + S P+PE P P
Sbjct: 901 AAQKQLEREQEQLRREAERLSQRQTERDLCQVSHPHTKLMRIPSFF----PSPEEPPSPS 956
Query: 128 AP 129
AP
Sbjct: 957 AP 958
>gi|21493029 A-kinase anchor protein 13 isoform 2 [Homo sapiens]
Length = 2813
Score = 30.8 bits (68), Expect = 0.34
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 68 AVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEEPAPESPQVPE 127
A ++++E +EQ+R E+ SQ + E L + +L + S P+PE P P
Sbjct: 2656 AAQKQLEREQEQLRREAERLSQRQTERDLCQVSHPHTKLMRIPSFF----PSPEEPPSPS 2711
Query: 128 AP 129
AP
Sbjct: 2712 AP 2713
>gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo
sapiens]
Length = 2168
Score = 30.8 bits (68), Expect = 0.34
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 56 QAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQS--CL 113
Q M L+K EE E LK++ R+ N + + E L+ L ++L+K CL
Sbjct: 1010 QHMMLMKAMEARKKAEEKERLKQEKRDEKRLNKERKLEQRRLE-LEMAKELKKPNEDMCL 1068
Query: 114 SPEEPAPESPQVP 126
+ ++P PE P++P
Sbjct: 1069 ADQKPLPELPRIP 1081
>gi|4503593 epidermal growth factor receptor pathway substrate 15
isoform A [Homo sapiens]
Length = 896
Score = 30.4 bits (67), Expect = 0.44
Identities = 16/66 (24%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 42 ASGASVVAIDNKIEQAMDLV--KNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKT 99
A +++ +D + +DL KN++ ++E+ + +K++ E+ + +++RENT L+
Sbjct: 327 ADFSAIKELDTLNNEIVDLQREKNNVEQDLKEKEDTIKQRTSEVQDLQDEVQRENTNLQK 386
Query: 100 LASPEQ 105
L + +Q
Sbjct: 387 LQAQKQ 392
>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
sapiens]
Length = 1843
Score = 30.4 bits (67), Expect = 0.44
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 62 KNHLMYAVREEVEILKEQIRELVEKNSQLEREN-TLLKTLAS-------PEQLEKFQSCL 113
+N L+ ++I E+I L ++NS+LEREN L KTL S E LEK S L
Sbjct: 640 ENELLQKKITNLKITCEKIEALEQENSELERENRKLKKTLDSFKNLTFQLESLEKENSQL 699
Query: 114 SPE 116
E
Sbjct: 700 DEE 702
Score = 26.2 bits (56), Expect = 8.4
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 61 VKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEK 108
++N + EE++I +++ +L ++N LE+E + L+ +QLEK
Sbjct: 791 MENQTLQKNLEELKISSKRLEQLEKENKSLEQETSQLE--KDKKQLEK 836
>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
sapiens]
Length = 1870
Score = 30.4 bits (67), Expect = 0.44
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 62 KNHLMYAVREEVEILKEQIRELVEKNSQLEREN-TLLKTLAS-------PEQLEKFQSCL 113
+N L+ ++I E+I L ++NS+LEREN L KTL S E LEK S L
Sbjct: 640 ENELLQKKITNLKITCEKIEALEQENSELERENRKLKKTLDSFKNLTFQLESLEKENSQL 699
Query: 114 SPE 116
E
Sbjct: 700 DEE 702
Score = 26.2 bits (56), Expect = 8.4
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 61 VKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEK 108
++N + EE++I +++ +L ++N LE+E + L+ +QLEK
Sbjct: 791 MENQTLQKNLEELKISSKRLEQLEKENKSLEQETSQLE--KDKKQLEK 836
>gi|4759344 centromere/kinetochore protein zw10 [Homo sapiens]
Length = 779
Score = 30.4 bits (67), Expect = 0.44
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 38 LDNSASGASVVAIDNKIEQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLL 97
L + S ++ +K+ + +DL+K+ + VR ++ + E + QLER++ +L
Sbjct: 50 LPSMQSAQGLITQVDKLSEDIDLLKSRIESEVRRDLHV---STGEFTDLKQQLERDSVVL 106
Query: 98 KTLASPEQLEKFQSCL 113
L +QL++F + +
Sbjct: 107 SLL---KQLQEFSTAI 119
>gi|60498973 myelin transcription factor 1-like [Homo sapiens]
Length = 1184
Score = 30.4 bits (67), Expect = 0.44
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 71 EEVEILKEQIRELVEKNSQLERENTLLKT 99
EE++ L E+I+EL E NSQ+E + L+T
Sbjct: 1061 EEIKQLDEEIKELNESNSQMEADMIKLRT 1089
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.126 0.336
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,287,332
Number of Sequences: 37866
Number of extensions: 222214
Number of successful extensions: 2072
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 128
Number of HSP's that attempted gapping in prelim test: 1893
Number of HSP's gapped (non-prelim): 309
length of query: 134
length of database: 18,247,518
effective HSP length: 91
effective length of query: 43
effective length of database: 14,801,712
effective search space: 636473616
effective search space used: 636473616
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.