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Search of human proteins with 37595537
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|37595537 ring finger protein 34 isoform 2 [Homo sapiens]
(372 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|37595537 ring finger protein 34 isoform 2 [Homo sapiens] 766 0.0
gi|37595539 ring finger protein 34 isoform 1 [Homo sapiens] 764 0.0
gi|62865649 rififylin [Homo sapiens] 280 1e-75
gi|17432433 rififylin [Homo sapiens] 280 1e-75
gi|171542821 mitochondrial ubiquitin ligase activator of NFKB 1 ... 62 6e-10
gi|44680139 baculoviral IAP repeat-containing 8 [Homo sapiens] 59 7e-09
gi|32528299 baculoviral IAP repeat-containing protein 4 [Homo sa... 59 9e-09
gi|4502141 baculoviral IAP repeat-containing protein 2 [Homo sap... 57 3e-08
gi|30348954 mindbomb homolog 1 [Homo sapiens] 57 3e-08
gi|33946285 baculoviral IAP repeat-containing protein 3 [Homo sa... 57 3e-08
gi|4502139 baculoviral IAP repeat-containing protein 3 [Homo sap... 57 3e-08
gi|11545910 livin inhibitor of apoptosis isoform beta [Homo sapi... 50 2e-06
gi|21536421 livin inhibitor of apoptosis isoform alpha [Homo sap... 50 3e-06
gi|38788243 myosin regulatory light chain interacting protein [H... 49 6e-06
gi|5729765 cell growth regulator with ring finger domain 1 [Homo... 49 7e-06
gi|217416388 neuralized homolog 1B [Homo sapiens] 49 9e-06
gi|223278368 neuralized-like [Homo sapiens] 47 3e-05
gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens] 47 3e-05
gi|53729363 leucine rich repeat and sterile alpha motif containi... 47 4e-05
gi|53729361 leucine rich repeat and sterile alpha motif containi... 47 4e-05
gi|53729359 leucine rich repeat and sterile alpha motif containi... 47 4e-05
gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens] 45 1e-04
gi|45387949 ring finger and SPRY domain containing 1 [Homo sapiens] 45 1e-04
gi|47716512 mex-3 homolog B [Homo sapiens] 44 2e-04
gi|21264330 mindbomb homolog 2 [Homo sapiens] 44 2e-04
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens] 44 2e-04
gi|214010238 mahogunin, ring finger 1 isoform 4 [Homo sapiens] 42 7e-04
gi|214010236 mahogunin, ring finger 1 isoform 3 [Homo sapiens] 42 7e-04
gi|214010234 mahogunin, ring finger 1 isoform 2 [Homo sapiens] 42 7e-04
gi|44917608 mahogunin, ring finger 1 isoform 1 [Homo sapiens] 42 7e-04
>gi|37595537 ring finger protein 34 isoform 2 [Homo sapiens]
Length = 372
Score = 766 bits (1979), Expect = 0.0
Identities = 372/372 (100%), Positives = 372/372 (100%)
Query: 1 MKAGATSMWASCCGLLNEVMGTGAVRGQQSAFAGATGPFRFTPNPEFSTYPPAATEGPNI 60
MKAGATSMWASCCGLLNEVMGTGAVRGQQSAFAGATGPFRFTPNPEFSTYPPAATEGPNI
Sbjct: 1 MKAGATSMWASCCGLLNEVMGTGAVRGQQSAFAGATGPFRFTPNPEFSTYPPAATEGPNI 60
Query: 61 VCKACGLSFSVFRKKHVCCDCKKDFCSVCSVLQENLRRCSTCHLLQETAFQRPQLMRLKV 120
VCKACGLSFSVFRKKHVCCDCKKDFCSVCSVLQENLRRCSTCHLLQETAFQRPQLMRLKV
Sbjct: 61 VCKACGLSFSVFRKKHVCCDCKKDFCSVCSVLQENLRRCSTCHLLQETAFQRPQLMRLKV 120
Query: 121 KDLRQYLILRNIPIDTCREKEDLVDLVLCHHGLGSEDDMDTSSLNSSRSQTSSFFTRSFF 180
KDLRQYLILRNIPIDTCREKEDLVDLVLCHHGLGSEDDMDTSSLNSSRSQTSSFFTRSFF
Sbjct: 121 KDLRQYLILRNIPIDTCREKEDLVDLVLCHHGLGSEDDMDTSSLNSSRSQTSSFFTRSFF 180
Query: 181 SNYTAPSATMSSFQGELMDGDQTSRSGVPAQVQSEITSANTEDDDDDDDEDDDDEEENAE 240
SNYTAPSATMSSFQGELMDGDQTSRSGVPAQVQSEITSANTEDDDDDDDEDDDDEEENAE
Sbjct: 181 SNYTAPSATMSSFQGELMDGDQTSRSGVPAQVQSEITSANTEDDDDDDDEDDDDEEENAE 240
Query: 241 DRNPGLSKERVRASLSDLSSLDDVEGMSVRQLKEILARNFVNYSGCCEKWELVEKVNRLY 300
DRNPGLSKERVRASLSDLSSLDDVEGMSVRQLKEILARNFVNYSGCCEKWELVEKVNRLY
Sbjct: 241 DRNPGLSKERVRASLSDLSSLDDVEGMSVRQLKEILARNFVNYSGCCEKWELVEKVNRLY 300
Query: 301 KENEENQKSYGERLQLQDEEDDSLCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICR 360
KENEENQKSYGERLQLQDEEDDSLCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICR
Sbjct: 301 KENEENQKSYGERLQLQDEEDDSLCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICR 360
Query: 361 QYVVRAVHVFKS 372
QYVVRAVHVFKS
Sbjct: 361 QYVVRAVHVFKS 372
>gi|37595539 ring finger protein 34 isoform 1 [Homo sapiens]
Length = 373
Score = 764 bits (1974), Expect = 0.0
Identities = 371/371 (100%), Positives = 371/371 (100%)
Query: 2 KAGATSMWASCCGLLNEVMGTGAVRGQQSAFAGATGPFRFTPNPEFSTYPPAATEGPNIV 61
KAGATSMWASCCGLLNEVMGTGAVRGQQSAFAGATGPFRFTPNPEFSTYPPAATEGPNIV
Sbjct: 3 KAGATSMWASCCGLLNEVMGTGAVRGQQSAFAGATGPFRFTPNPEFSTYPPAATEGPNIV 62
Query: 62 CKACGLSFSVFRKKHVCCDCKKDFCSVCSVLQENLRRCSTCHLLQETAFQRPQLMRLKVK 121
CKACGLSFSVFRKKHVCCDCKKDFCSVCSVLQENLRRCSTCHLLQETAFQRPQLMRLKVK
Sbjct: 63 CKACGLSFSVFRKKHVCCDCKKDFCSVCSVLQENLRRCSTCHLLQETAFQRPQLMRLKVK 122
Query: 122 DLRQYLILRNIPIDTCREKEDLVDLVLCHHGLGSEDDMDTSSLNSSRSQTSSFFTRSFFS 181
DLRQYLILRNIPIDTCREKEDLVDLVLCHHGLGSEDDMDTSSLNSSRSQTSSFFTRSFFS
Sbjct: 123 DLRQYLILRNIPIDTCREKEDLVDLVLCHHGLGSEDDMDTSSLNSSRSQTSSFFTRSFFS 182
Query: 182 NYTAPSATMSSFQGELMDGDQTSRSGVPAQVQSEITSANTEDDDDDDDEDDDDEEENAED 241
NYTAPSATMSSFQGELMDGDQTSRSGVPAQVQSEITSANTEDDDDDDDEDDDDEEENAED
Sbjct: 183 NYTAPSATMSSFQGELMDGDQTSRSGVPAQVQSEITSANTEDDDDDDDEDDDDEEENAED 242
Query: 242 RNPGLSKERVRASLSDLSSLDDVEGMSVRQLKEILARNFVNYSGCCEKWELVEKVNRLYK 301
RNPGLSKERVRASLSDLSSLDDVEGMSVRQLKEILARNFVNYSGCCEKWELVEKVNRLYK
Sbjct: 243 RNPGLSKERVRASLSDLSSLDDVEGMSVRQLKEILARNFVNYSGCCEKWELVEKVNRLYK 302
Query: 302 ENEENQKSYGERLQLQDEEDDSLCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQ 361
ENEENQKSYGERLQLQDEEDDSLCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQ
Sbjct: 303 ENEENQKSYGERLQLQDEEDDSLCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQ 362
Query: 362 YVVRAVHVFKS 372
YVVRAVHVFKS
Sbjct: 363 YVVRAVHVFKS 373
>gi|62865649 rififylin [Homo sapiens]
Length = 363
Score = 280 bits (716), Expect = 1e-75
Identities = 167/385 (43%), Positives = 224/385 (58%), Gaps = 42/385 (10%)
Query: 8 MWASCCGLLNEVMGTGAVRGQQSAFAGATGP-FRFTPNPEFSTYPPAATEGPNIVCKACG 66
MWA+CC + GQ G + NP +S++P P+ CK+CG
Sbjct: 1 MWATCCNWF-------CLDGQPEEVPPPQGARMQAYSNPGYSSFPSPTGLEPS--CKSCG 51
Query: 67 LSFSVFRKKHVCCDCKKDFCSVCSVLQEN-LRRCSTCHLLQETAFQRPQLMRLKVKDLRQ 125
F+ +K C DCKK+FC CS N R C C + TAFQR +LM++KVKDLR
Sbjct: 52 AHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRATAFQREELMKMKVKDLRD 111
Query: 126 YLILRNIPIDTCREKEDLVDLVLCHHGLGSEDDMD-TSSLNSSRSQTSSFFTRSFFSNY- 183
YL L +I + CREKE+LV LVL + S++D S+L+ + +F T+ S
Sbjct: 112 YLSLHDISTEMCREKEELVLLVLGQQPVISQEDRTRASTLSPDFPEQQAFLTQPHSSMVP 171
Query: 184 -TAPSATMSSFQGELMDGDQTSRSGVPAQVQ-SEITSANTEDDDDDDDEDDDDEEENAED 241
T+P+ SS Q + S PAQVQ ++ + + D ++ + AED
Sbjct: 172 PTSPNLPSSSAQ---------ATSVPPAQVQENQQANGHVSQDQEEPVYLESVARVPAED 222
Query: 242 RNPGLSKERV-----RASLSDLSSLDDVEGMSVRQLKEILARNFVNYSGCCEKWELVEKV 296
+ E RASLSDL+ L+D+EG++VRQLKEILARNFVNY GCCEKWEL+E+V
Sbjct: 223 ETQSIDSEDSFVPGRRASLSDLTDLEDIEGLTVRQLKEILARNFVNYKGCCEKWELMERV 282
Query: 297 NRLYKENEENQKSYGERLQLQDEE---------DDSLCRICMDAVIDCVLLECGHMVTCT 347
RLYK+ QK + +++ +++LC+ICMD+ IDCVLLECGHMVTCT
Sbjct: 283 TRLYKD----QKGLQHLVSGAEDQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCT 338
Query: 348 KCGKRMSECPICRQYVVRAVHVFKS 372
KCGKRM+ECPICRQYV+RAVHVF+S
Sbjct: 339 KCGKRMNECPICRQYVIRAVHVFRS 363
>gi|17432433 rififylin [Homo sapiens]
Length = 363
Score = 280 bits (716), Expect = 1e-75
Identities = 167/385 (43%), Positives = 224/385 (58%), Gaps = 42/385 (10%)
Query: 8 MWASCCGLLNEVMGTGAVRGQQSAFAGATGP-FRFTPNPEFSTYPPAATEGPNIVCKACG 66
MWA+CC + GQ G + NP +S++P P+ CK+CG
Sbjct: 1 MWATCCNWF-------CLDGQPEEVPPPQGARMQAYSNPGYSSFPSPTGLEPS--CKSCG 51
Query: 67 LSFSVFRKKHVCCDCKKDFCSVCSVLQEN-LRRCSTCHLLQETAFQRPQLMRLKVKDLRQ 125
F+ +K C DCKK+FC CS N R C C + TAFQR +LM++KVKDLR
Sbjct: 52 AHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRATAFQREELMKMKVKDLRD 111
Query: 126 YLILRNIPIDTCREKEDLVDLVLCHHGLGSEDDMD-TSSLNSSRSQTSSFFTRSFFSNY- 183
YL L +I + CREKE+LV LVL + S++D S+L+ + +F T+ S
Sbjct: 112 YLSLHDISTEMCREKEELVLLVLGQQPVISQEDRTRASTLSPDFPEQQAFLTQPHSSMVP 171
Query: 184 -TAPSATMSSFQGELMDGDQTSRSGVPAQVQ-SEITSANTEDDDDDDDEDDDDEEENAED 241
T+P+ SS Q + S PAQVQ ++ + + D ++ + AED
Sbjct: 172 PTSPNLPSSSAQ---------ATSVPPAQVQENQQANGHVSQDQEEPVYLESVARVPAED 222
Query: 242 RNPGLSKERV-----RASLSDLSSLDDVEGMSVRQLKEILARNFVNYSGCCEKWELVEKV 296
+ E RASLSDL+ L+D+EG++VRQLKEILARNFVNY GCCEKWEL+E+V
Sbjct: 223 ETQSIDSEDSFVPGRRASLSDLTDLEDIEGLTVRQLKEILARNFVNYKGCCEKWELMERV 282
Query: 297 NRLYKENEENQKSYGERLQLQDEE---------DDSLCRICMDAVIDCVLLECGHMVTCT 347
RLYK+ QK + +++ +++LC+ICMD+ IDCVLLECGHMVTCT
Sbjct: 283 TRLYKD----QKGLQHLVSGAEDQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCT 338
Query: 348 KCGKRMSECPICRQYVVRAVHVFKS 372
KCGKRM+ECPICRQYV+RAVHVF+S
Sbjct: 339 KCGKRMNECPICRQYVIRAVHVFRS 363
>gi|171542821 mitochondrial ubiquitin ligase activator of NFKB 1
[Homo sapiens]
Length = 352
Score = 62.4 bits (150), Expect = 6e-10
Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 16/133 (12%)
Query: 254 SLSDLSSLDDVEGMSVRQLKEILARNFVNYSGCCEKWELVEK----------VNRLYKEN 303
S D SL + SVR L ++LA F ++ C + ++ K + ++ +E
Sbjct: 222 SSQDFDSLLQRQESSVR-LWKVLALVF-GFATCATLFFILRKQYLQRQERLRLKQMQEEF 279
Query: 304 EENQKSYGERLQLQDEED-DSLCRICMDAVIDCVLLECGHMVTCTKCGKRMSE---CPIC 359
+E++ R + +D E S C +C+ + CV LECGH+ +CT+C + + E CPIC
Sbjct: 280 QEHEAQLLSRAKPEDRESLKSACVVCLSSFKSCVFLECGHVCSCTECYRALPEPKKCPIC 339
Query: 360 RQYVVRAVHVFKS 372
RQ + R + ++ S
Sbjct: 340 RQAITRVIPLYNS 352
>gi|44680139 baculoviral IAP repeat-containing 8 [Homo sapiens]
Length = 236
Score = 58.9 bits (141), Expect = 7e-09
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 302 ENEENQKSYGERLQLQDE----EDDSLCRICMDAVIDCVLLECGHMVTCTKCGKRMSECP 357
ENE NQ S + ++ +++ LC+ICMD I V + CGH+VTC +C + + CP
Sbjct: 162 ENELNQTSLQREISPEEPLRRLQEEKLCKICMDRHIAVVFIPCGHLVTCKQCAEAVDRCP 221
Query: 358 ICRQYVVRAVHVFKS 372
+C + VF S
Sbjct: 222 MCSAVIDFKQRVFMS 236
>gi|32528299 baculoviral IAP repeat-containing protein 4 [Homo
sapiens]
Length = 497
Score = 58.5 bits (140), Expect = 9e-09
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 307 QKSYGERLQLQDEEDDSLCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQYVVRA 366
QK QL+ +++ LC+ICMD I V + CGH+VTC +C + + +CP+C +
Sbjct: 432 QKEISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFK 491
Query: 367 VHVFKS 372
+F S
Sbjct: 492 QKIFMS 497
>gi|4502141 baculoviral IAP repeat-containing protein 2 [Homo
sapiens]
Length = 618
Score = 57.0 bits (136), Expect = 3e-08
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 315 QLQDEEDDSLCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQYVVRAVHVFKS 372
QL+ +++ C++CMD + V + CGH+V C +C + +CPICR + V F S
Sbjct: 561 QLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS 618
>gi|30348954 mindbomb homolog 1 [Homo sapiens]
Length = 1006
Score = 57.0 bits (136), Expect = 3e-08
Identities = 25/56 (44%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 315 QLQDEEDDSLCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQYVVRAVHVF 370
QLQD ++ ++C +C+D + + + L CGH TC CG RMSECPICR+ + R + ++
Sbjct: 953 QLQDIKEQTMCPVCLDRLKNMIFL-CGHG-TCQLCGDRMSECPICRKAIERRILLY 1006
Score = 45.1 bits (105), Expect = 1e-04
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 287 CEKWELVEKVNRLYKENEENQK-SYGERLQLQDEEDDSLCRICMDAVIDCVLLECGHMVT 345
C L + + + +KE Q S + D E C +C D D + CGH+ T
Sbjct: 780 CPDPNLCKALAKCHKEKVSGQVGSRSPSMISNDSETLEECMVCSDMKRDTLFGPCGHIAT 839
Query: 346 CTKCGKRMSECPICRQYV 363
C+ C R+ +C IC++ V
Sbjct: 840 CSLCSPRVKKCLICKEQV 857
Score = 39.7 bits (91), Expect = 0.004
Identities = 18/53 (33%), Positives = 22/53 (41%)
Query: 315 QLQDEEDDSLCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQYVVRAV 367
Q+Q C +C D + CGHM C C M +C CR V R V
Sbjct: 856 QVQSRTKIEECVVCSDKKAAVLFQPCGHMCACENCANLMKKCVQCRAVVERRV 908
>gi|33946285 baculoviral IAP repeat-containing protein 3 [Homo
sapiens]
Length = 604
Score = 56.6 bits (135), Expect = 3e-08
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 315 QLQDEEDDSLCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQYVVRAVHVFKS 372
QL+ +++ C++CMD + V + CGH+V C C + +CPICR + V F S
Sbjct: 547 QLRRLQEERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTVRTFLS 604
>gi|4502139 baculoviral IAP repeat-containing protein 3 [Homo
sapiens]
Length = 604
Score = 56.6 bits (135), Expect = 3e-08
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 315 QLQDEEDDSLCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQYVVRAVHVFKS 372
QL+ +++ C++CMD + V + CGH+V C C + +CPICR + V F S
Sbjct: 547 QLRRLQEERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTVRTFLS 604
>gi|11545910 livin inhibitor of apoptosis isoform beta [Homo
sapiens]
Length = 280
Score = 50.4 bits (119), Expect = 2e-06
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 291 ELVEKVNRLYKENEENQKSYGERLQLQDEEDDSLCRICMDAVIDCVLLECGHMVTCTKCG 350
EL + E+ + + QL+ +++ C++C+D + V + CGH+V C +C
Sbjct: 200 ELPTPRREVQSESAQEPGARDVEAQLRRLQEERTCKVCLDRAVSIVFVPCGHLV-CAECA 258
Query: 351 KRMSECPICRQYVVRAVHVFKS 372
+ CPICR V V F S
Sbjct: 259 PGLQLCPICRAPVRSRVRTFLS 280
>gi|21536421 livin inhibitor of apoptosis isoform alpha [Homo
sapiens]
Length = 298
Score = 50.1 bits (118), Expect = 3e-06
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 315 QLQDEEDDSLCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQYVVRAVHVFKS 372
QL+ +++ C++C+D + V + CGH+V C +C + CPICR V V F S
Sbjct: 242 QLRRLQEERTCKVCLDRAVSIVFVPCGHLV-CAECAPGLQLCPICRAPVRSRVRTFLS 298
>gi|38788243 myosin regulatory light chain interacting protein [Homo
sapiens]
Length = 445
Score = 49.3 bits (116), Expect = 6e-06
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 315 QLQDEEDDSLCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQYVVRAVHVF 370
+L+ ++ LC +C + I+ CGH V C C ++ CP+CR V HV+
Sbjct: 377 KLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVY 432
>gi|5729765 cell growth regulator with ring finger domain 1 [Homo
sapiens]
Length = 332
Score = 48.9 bits (115), Expect = 7e-06
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 297 NRLYKENEENQKSYGERLQLQD------EEDDSLCRICMDAVIDCVLLECGHMVTCTKCG 350
N E + +S E++ L + EE+ C +C + ++ VLL C H C C
Sbjct: 240 NNSSSEEKNTDRSLLEKVGLSESEVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCV 299
Query: 351 KRMSECPICRQYV 363
K +CP+CRQ+V
Sbjct: 300 KYFQQCPMCRQFV 312
>gi|217416388 neuralized homolog 1B [Homo sapiens]
Length = 555
Score = 48.5 bits (114), Expect = 9e-06
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 325 CRICMDAVIDCVLLECGHMVTCTKCGKRMSE-----CPICRQYVVRAVHVFK 371
C +C D +D V+ CGHM C CG R+ CPICR+ + + +++
Sbjct: 503 CTVCFDGEVDTVIYTCGHMCLCHSCGLRLKRQARACCPICRRPIKDVIKIYR 554
>gi|223278368 neuralized-like [Homo sapiens]
Length = 574
Score = 47.0 bits (110), Expect = 3e-05
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 325 CRICMDAVIDCVLLECGHMVTCTKCGKRMSE-----CPICRQYVVRAVHVFKS 372
C IC + +D V+ CGHM C CG R+ + CPICR+ + + ++S
Sbjct: 521 CTICYEHAVDTVIYTCGHMCLCYACGLRLKKALHACCPICRRPIKDIIKTYRS 573
>gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens]
Length = 485
Score = 47.0 bits (110), Expect = 3e-05
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 25/98 (25%)
Query: 288 EKWELVEKVNRLYKENE----------ENQKSYGERLQLQDE----------EDDSLCRI 327
E W L+E++NR K+ E E K E++Q Q E E++ C I
Sbjct: 346 EHWALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCII 405
Query: 328 CMDAVIDCVLLECGHMVTCTKC----GKRMSECPICRQ 361
C + I+ V L C H C+ C KR ECPICR+
Sbjct: 406 CSEYFIEAVTLNCAHSF-CSYCINEWMKRKIECPICRK 442
>gi|53729363 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 46.6 bits (109), Expect = 4e-05
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 319 EEDDSLCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQYVVRAVHVFKS 372
E S C +C++ + L CGH+ C +C + + CP+CRQ + + + ++ S
Sbjct: 669 EVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLRIYHS 722
>gi|53729361 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 46.6 bits (109), Expect = 4e-05
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 319 EEDDSLCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQYVVRAVHVFKS 372
E S C +C++ + L CGH+ C +C + + CP+CRQ + + + ++ S
Sbjct: 669 EVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLRIYHS 722
>gi|53729359 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 46.6 bits (109), Expect = 4e-05
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 319 EEDDSLCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQYVVRAVHVFKS 372
E S C +C++ + L CGH+ C +C + + CP+CRQ + + + ++ S
Sbjct: 669 EVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLRIYHS 722
>gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens]
Length = 1390
Score = 45.1 bits (105), Expect = 1e-04
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 202 QTSRSGVPAQVQSEITSANTEDDDDDDDEDDDDEEENAEDRNPGLSKERVR 252
++S G + + + + EDDDDDDD+DDDD++E+ ED G + + R
Sbjct: 243 ESSEEGEDQEHEDDGEDEDDEDDDDDDDDDDDDDDEDDEDEEDGEEENQKR 293
Score = 33.5 bits (75), Expect = 0.32
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 194 QGELMDGDQTSRSGVPAQVQSEITSANTEDDDDDDDEDDDDEEENAED 241
Q ++ D+ + V+S + E +DD +DEDD+D++++ +D
Sbjct: 224 QKDIQRTDEETTDNQEGSVESSEEGEDQEHEDDGEDEDDEDDDDDDDD 271
Score = 31.6 bits (70), Expect = 1.2
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 222 EDDDDDDDEDDDDEEENAEDRNPGLSKER 250
+DDDDDD++D+D+E+ E++ ++R
Sbjct: 271 DDDDDDDEDDEDEEDGEEENQKRYYLRQR 299
Score = 30.8 bits (68), Expect = 2.0
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 199 DGDQTSRSGVPAQVQSEITSANTEDDDDDDDEDDDDEEENAED 241
D + T + E EDD +D+D++DDD++++ +D
Sbjct: 231 DEETTDNQEGSVESSEEGEDQEHEDDGEDEDDEDDDDDDDDDD 273
Score = 30.4 bits (67), Expect = 2.7
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 182 NYTAPSATMSSFQGELMDGDQTSRSGVPAQVQSEITSANTEDDDDDDDEDDDDEEENAED 241
N T S +G+ D +T Q S +S ED + +DD +D+D+E++ +D
Sbjct: 209 NETEESNLNMYTRGKQKDIQRTDEETTDNQEGSVESSEEGEDQEHEDDGEDEDDEDDDDD 268
>gi|45387949 ring finger and SPRY domain containing 1 [Homo sapiens]
Length = 576
Score = 45.1 bits (105), Expect = 1e-04
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 322 DSLCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQYVVRAV 367
++ C +C D V D L CGH C C ++ CP+CR+ +V +
Sbjct: 524 ENCCSLCCDEVADTQLKPCGHSDLCMDCALQLETCPLCRKEIVSRI 569
>gi|47716512 mex-3 homolog B [Homo sapiens]
Length = 569
Score = 44.3 bits (103), Expect = 2e-04
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 325 CRICMDAVIDCVLLECGHMVTCTKCGKRM-----SECPICRQYVVRAVHVF 370
C +C ++ + L+ CGH + C +C R+ ECP+C V +A+ +F
Sbjct: 518 CSVCFESEVIAALVPCGHNLFCMECANRICEKSEPECPVCHTAVTQAIRIF 568
>gi|21264330 mindbomb homolog 2 [Homo sapiens]
Length = 1013
Score = 44.3 bits (103), Expect = 2e-04
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 18/80 (22%)
Query: 291 ELVEKVNRLYKENEENQKSYGERLQLQDEEDDSLCRICMDAVIDCVLLECGHMVTCTKCG 350
+LVE++ Y++ EE C IC+D+ I V +CGH C CG
Sbjct: 951 QLVEELQSRYRQMEER----------------ITCPICIDSHIRLVF-QCGHGA-CAPCG 992
Query: 351 KRMSECPICRQYVVRAVHVF 370
+S CPICRQ + + +F
Sbjct: 993 SALSACPICRQPIRDRIQIF 1012
Score = 32.7 bits (73), Expect = 0.54
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 325 CRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQYV 363
C +C + + + C H C +C +RM +C C+ V
Sbjct: 890 CLVCSELALLVLFSPCQHRTVCEECARRMKKCIRCQVVV 928
>gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]
Length = 651
Score = 44.3 bits (103), Expect = 2e-04
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 325 CRICMDAVIDCVLLECGHMVTCTKC-----GKRMSECPICRQYVVRAVHVF 370
C +C + + L+ CGH + C C GK ECP CR +A+H+F
Sbjct: 600 CVVCAEGEVMAALVPCGHNLFCMDCAVRICGKSEPECPACRTPATQAIHIF 650
>gi|214010238 mahogunin, ring finger 1 isoform 4 [Homo sapiens]
Length = 531
Score = 42.4 bits (98), Expect = 7e-04
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 11/79 (13%)
Query: 291 ELVEKVNRLYKE-----NEENQKSYGERLQLQDEEDDSLCRICMDAVIDCVLLECGHMVT 345
++V++V+ L +E N+ NQ++ + D ++ C +C+ + D ++L C H+
Sbjct: 242 QIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNE--CVVCLSDLRDTLILPCRHLCL 299
Query: 346 CTKCGKRM----SECPICR 360
CT C + + CPICR
Sbjct: 300 CTSCADTLRYQANNCPICR 318
>gi|214010236 mahogunin, ring finger 1 isoform 3 [Homo sapiens]
Length = 552
Score = 42.4 bits (98), Expect = 7e-04
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 11/79 (13%)
Query: 291 ELVEKVNRLYKE-----NEENQKSYGERLQLQDEEDDSLCRICMDAVIDCVLLECGHMVT 345
++V++V+ L +E N+ NQ++ + D ++ C +C+ + D ++L C H+
Sbjct: 241 QIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNE--CVVCLSDLRDTLILPCRHLCL 298
Query: 346 CTKCGKRM----SECPICR 360
CT C + + CPICR
Sbjct: 299 CTSCADTLRYQANNCPICR 317
>gi|214010234 mahogunin, ring finger 1 isoform 2 [Homo sapiens]
Length = 555
Score = 42.4 bits (98), Expect = 7e-04
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 11/79 (13%)
Query: 291 ELVEKVNRLYKE-----NEENQKSYGERLQLQDEEDDSLCRICMDAVIDCVLLECGHMVT 345
++V++V+ L +E N+ NQ++ + D ++ C +C+ + D ++L C H+
Sbjct: 242 QIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNE--CVVCLSDLRDTLILPCRHLCL 299
Query: 346 CTKCGKRM----SECPICR 360
CT C + + CPICR
Sbjct: 300 CTSCADTLRYQANNCPICR 318
>gi|44917608 mahogunin, ring finger 1 isoform 1 [Homo sapiens]
Length = 576
Score = 42.4 bits (98), Expect = 7e-04
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 11/79 (13%)
Query: 291 ELVEKVNRLYKE-----NEENQKSYGERLQLQDEEDDSLCRICMDAVIDCVLLECGHMVT 345
++V++V+ L +E N+ NQ++ + D ++ C +C+ + D ++L C H+
Sbjct: 241 QIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNE--CVVCLSDLRDTLILPCRHLCL 298
Query: 346 CTKCGKRM----SECPICR 360
CT C + + CPICR
Sbjct: 299 CTSCADTLRYQANNCPICR 317
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,234,761
Number of Sequences: 37866
Number of extensions: 744133
Number of successful extensions: 12725
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 280
Number of HSP's that attempted gapping in prelim test: 7702
Number of HSP's gapped (non-prelim): 2697
length of query: 372
length of database: 18,247,518
effective HSP length: 104
effective length of query: 268
effective length of database: 14,309,454
effective search space: 3834933672
effective search space used: 3834933672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.