Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: MGRN1 Sequence: fasta or formatted (555aa) NCBI GI: 214010234
Description:

mahogunin, ring finger 1 isoform 2

Referenced in:

Ring Finger Proteins

Other entries for this name:
alt prot [552aa] mahogunin, ring finger 1 isoform 3
alt prot [531aa] mahogunin, ring finger 1 isoform 4
alt prot [576aa] mahogunin, ring finger 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         40           2
 C cysteine            2.0         11           1
 D aspartate           7.2         40           2
 E glutamate           7.4         41           2
 F phenylalanine       3.6         20           2
 G glycine             5.6         31           2
 H histidine           2.5         14           1
 I isoleucine          4.5         25           1
 K lysine              3.8         21           2
 L leucine             9.4         52           2
 M methionine          0.9          5           1
 N asparagine          3.2         18           2
 P proline             9.2         51           3
 Q glutamine           3.6         20           2
 R arginine            5.2         29           2
 S serine             11.4         63           3
 T threonine           4.0         22           2
 V valine              5.9         33           2
 W tryptophan          0.4          2           1
 Y tyrosine            3.1         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mahogunin, ring finger 1 isoform 2 
MGRN1                 0.983   mahogunin, ring finger 1 isoform 1 
MGRN1                 0.929   mahogunin, ring finger 1 isoform 4 
MGRN1                 0.912   mahogunin, ring finger 1 isoform 3 
RNF157                0.497   ring finger protein 157 
RNF26                 0.027   ring finger protein 26 
NEURL1B               0.026   neuralized homolog 1B 
MUL1                  0.024   mitochondrial ubiquitin ligase activator of NFKB 1 ...
CGRRF1                0.023   cell growth regulator with ring finger domain 1 [Homo...
NEURL                 0.022   neuralized-like 
ITIH5L                0.017   inter-alpha (globulin) inhibitor H5-like 
LRSAM1                0.017   leucine rich repeat and sterile alpha motif containi...
LRSAM1                0.017   leucine rich repeat and sterile alpha motif containi...
LRSAM1                0.017   leucine rich repeat and sterile alpha motif containi...
FCRL3                 0.016   Fc receptor-like 3 precursor 
RNF141                0.016   ring finger protein 141 
RFFL                  0.016   rififylin 
RFFL                  0.016   rififylin 
MDM2                  0.015   mouse double minute 2 homolog isoform MDM2e 
RNF34                 0.015   ring finger protein 34 isoform 1 
RNF34                 0.015   ring finger protein 34 isoform 2 
RERE                  0.015   atrophin-1 like protein isoform a 
RERE                  0.015   atrophin-1 like protein isoform a 
POLR2A                0.015   DNA-directed RNA polymerase II A 
MAGEA10               0.015   melanoma antigen family A, 10 
MAGEA10               0.015   melanoma antigen family A, 10 
RNF165                0.015   ring finger protein 165 
TNS1                  0.015   tensin 
RNF133                0.015   ring finger protein 133 
BIRC2                 0.014   baculoviral IAP repeat-containing protein 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press