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Search of human proteins with 36287110
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|36287110 FGFR1 oncogene partner isoform b [Homo sapiens]
(379 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|36287110 FGFR1 oncogene partner isoform b [Homo sapiens] 733 0.0
gi|5901954 FGFR1 oncogene partner isoform a [Homo sapiens] 721 0.0
gi|21389391 hypothetical protein LOC123811 [Homo sapiens] 46 6e-05
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 41 0.002
gi|148233596 LPS-responsive vesicle trafficking, beach and ancho... 37 0.022
gi|42518068 trans-golgi network protein 2 [Homo sapiens] 36 0.050
gi|4503179 oral-facial-digital syndrome 1 [Homo sapiens] 35 0.085
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 35 0.085
gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithora... 34 0.19
gi|217416394 hyaluronan-mediated motility receptor isoform b [Ho... 34 0.19
gi|5032055 reticulon 2 isoform A [Homo sapiens] 34 0.19
gi|46255005 reticulon 2 isoform B [Homo sapiens] 34 0.19
gi|47933392 cytohesin 1 interacting protein [Homo sapiens] 33 0.55
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 33 0.55
gi|157738619 smoothelin-like 1 [Homo sapiens] 33 0.55
gi|44955929 calmodulin regulated spectrin-associated protein 1-l... 33 0.55
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 32 0.94
gi|224809582 RAP1 GTPase activating protein isoform c [Homo sapi... 32 0.94
gi|224809578 RAP1 GTPase activating protein isoform a [Homo sapi... 32 0.94
gi|34452686 ring finger protein, LIM domain interacting [Homo sa... 32 1.2
gi|34452684 ring finger protein, LIM domain interacting [Homo sa... 32 1.2
gi|19923592 oxysterol binding protein-like 11 [Homo sapiens] 32 1.2
gi|59814411 hypothetical protein LOC253725 [Homo sapiens] 32 1.2
gi|67906195 ankyrin repeat and sterile alpha motif domain contai... 31 1.6
gi|154090959 hypothetical protein LOC55747 [Homo sapiens] 31 1.6
gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens] 31 2.1
gi|4502805 chromogranin A precursor [Homo sapiens] 31 2.1
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 31 2.1
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 31 2.1
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 31 2.1
>gi|36287110 FGFR1 oncogene partner isoform b [Homo sapiens]
Length = 379
Score = 733 bits (1891), Expect = 0.0
Identities = 379/379 (100%), Positives = 379/379 (100%)
Query: 1 MAATAAAVVAEEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE 60
MAATAAAVVAEEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE
Sbjct: 1 MAATAAAVVAEEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE 60
Query: 61 SLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRENLARDLGIIEAE 120
SLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRENLARDLGIIEAE
Sbjct: 61 SLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRENLARDLGIIEAE 120
Query: 121 GTVGGPLLLEVIRRCQQKEKGPTTGEGALDLSDVHSPPKSPEGKTSAQTTPSKKANDEAN 180
GTVGGPLLLEVIRRCQQKEKGPTTGEGALDLSDVHSPPKSPEGKTSAQTTPSKKANDEAN
Sbjct: 121 GTVGGPLLLEVIRRCQQKEKGPTTGEGALDLSDVHSPPKSPEGKTSAQTTPSKKANDEAN 180
Query: 181 QSDTSVSLSEPKSKSSLHLLSHETKIGSFLSNRTLDGKDKAGLCPDEDDMEGDSFFDDPI 240
QSDTSVSLSEPKSKSSLHLLSHETKIGSFLSNRTLDGKDKAGLCPDEDDMEGDSFFDDPI
Sbjct: 181 QSDTSVSLSEPKSKSSLHLLSHETKIGSFLSNRTLDGKDKAGLCPDEDDMEGDSFFDDPI 240
Query: 241 PKPEKTYGLRKEPRKQAGSLASLSDAPPLKSGLSSLAGAPSLKDSESKRGNTVLKDLKLI 300
PKPEKTYGLRKEPRKQAGSLASLSDAPPLKSGLSSLAGAPSLKDSESKRGNTVLKDLKLI
Sbjct: 241 PKPEKTYGLRKEPRKQAGSLASLSDAPPLKSGLSSLAGAPSLKDSESKRGNTVLKDLKLI 300
Query: 301 SDKIGSLGLGTGEDDDYVDDFNSTSHRSEKSEISIGEEIEEDLSVEIDDINTSDKLDDLT 360
SDKIGSLGLGTGEDDDYVDDFNSTSHRSEKSEISIGEEIEEDLSVEIDDINTSDKLDDLT
Sbjct: 301 SDKIGSLGLGTGEDDDYVDDFNSTSHRSEKSEISIGEEIEEDLSVEIDDINTSDKLDDLT 360
Query: 361 QDLTVSQLSDVADYLEDVA 379
QDLTVSQLSDVADYLEDVA
Sbjct: 361 QDLTVSQLSDVADYLEDVA 379
>gi|5901954 FGFR1 oncogene partner isoform a [Homo sapiens]
Length = 399
Score = 721 bits (1860), Expect = 0.0
Identities = 379/399 (94%), Positives = 379/399 (94%), Gaps = 20/399 (5%)
Query: 1 MAATAAAVVAEEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE 60
MAATAAAVVAEEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE
Sbjct: 1 MAATAAAVVAEEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE 60
Query: 61 SLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRENLARDLGIIEAE 120
SLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRENLARDLGIIEAE
Sbjct: 61 SLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRENLARDLGIIEAE 120
Query: 121 GTVGGPLLLEVIRRCQQKEKGPTTGEGALDLSDVHSPPKSPEGKTSAQTTPSK------- 173
GTVGGPLLLEVIRRCQQKEKGPTTGEGALDLSDVHSPPKSPEGKTSAQTTPSK
Sbjct: 121 GTVGGPLLLEVIRRCQQKEKGPTTGEGALDLSDVHSPPKSPEGKTSAQTTPSKIPRYKGQ 180
Query: 174 -------------KANDEANQSDTSVSLSEPKSKSSLHLLSHETKIGSFLSNRTLDGKDK 220
KANDEANQSDTSVSLSEPKSKSSLHLLSHETKIGSFLSNRTLDGKDK
Sbjct: 181 GKKKTSGQKAGDKKANDEANQSDTSVSLSEPKSKSSLHLLSHETKIGSFLSNRTLDGKDK 240
Query: 221 AGLCPDEDDMEGDSFFDDPIPKPEKTYGLRKEPRKQAGSLASLSDAPPLKSGLSSLAGAP 280
AGLCPDEDDMEGDSFFDDPIPKPEKTYGLRKEPRKQAGSLASLSDAPPLKSGLSSLAGAP
Sbjct: 241 AGLCPDEDDMEGDSFFDDPIPKPEKTYGLRKEPRKQAGSLASLSDAPPLKSGLSSLAGAP 300
Query: 281 SLKDSESKRGNTVLKDLKLISDKIGSLGLGTGEDDDYVDDFNSTSHRSEKSEISIGEEIE 340
SLKDSESKRGNTVLKDLKLISDKIGSLGLGTGEDDDYVDDFNSTSHRSEKSEISIGEEIE
Sbjct: 301 SLKDSESKRGNTVLKDLKLISDKIGSLGLGTGEDDDYVDDFNSTSHRSEKSEISIGEEIE 360
Query: 341 EDLSVEIDDINTSDKLDDLTQDLTVSQLSDVADYLEDVA 379
EDLSVEIDDINTSDKLDDLTQDLTVSQLSDVADYLEDVA
Sbjct: 361 EDLSVEIDDINTSDKLDDLTQDLTVSQLSDVADYLEDVA 399
>gi|21389391 hypothetical protein LOC123811 [Homo sapiens]
Length = 174
Score = 45.8 bits (107), Expect = 6e-05
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 15 ELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNESLKKFLNTKDGRLV 74
EL+ +L TLE GVL +KA +RA VF AL++ E + L +E+L L+
Sbjct: 6 ELKAVLKDTLEKKGVLGHLKARIRAEVFNALDDDR--EPRPSLSHENL----------LI 53
Query: 75 ASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRENLARDLGIIEAEGTVGGPLLLEVI 132
L+ E+L+F +T +V E+ R+ L +L E PLL ++
Sbjct: 54 NELIREYLEFNKYKYTASVLIAESGQPVVPLDRQFLIHELNAFEESKDNTIPLLYGIL 111
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 40.8 bits (94), Expect = 0.002
Identities = 54/235 (22%), Positives = 86/235 (36%), Gaps = 6/235 (2%)
Query: 144 TGEGALDLSDVHSPPKSPEGKTSAQTTPSKKANDEANQSDTSVSLSEPKSKSSLHLLSHE 203
+G+G D SD S S +S + ++ ++ SD+S S S S S S+
Sbjct: 542 SGKGKSDSSDSDSSDSSNSSDSSDSSDSDSSDSNSSSDSDSSDSDSSDSSDSDSSDSSNS 601
Query: 204 T-KIGSFLSNRTLDGKDKAGLCPDEDDMEGDSFFDDPIPKPEKTYGLRKEPRKQAGSLAS 262
+ S S+ + D D + D E DS D + + ++
Sbjct: 602 SDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDSSDNSDSSDSSN 661
Query: 263 LSDAPPLKSGLSSLAGAPSLKDSESKRGNTVLKDLKLISDKIGSLGLGTGEDDDYVDDFN 322
S++ S S + + S DS + ++ D S+ S + D D N
Sbjct: 662 SSNSSD-SSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSDSDSSDSSDSSN 720
Query: 323 STSHRSEKSEISIGEEI--EEDLSVEIDDINTSDKLD--DLTQDLTVSQLSDVAD 373
S S S+ S S + D S D N+SD D D + S SD +D
Sbjct: 721 SNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSD 775
Score = 35.4 bits (80), Expect = 0.085
Identities = 49/232 (21%), Positives = 85/232 (36%), Gaps = 12/232 (5%)
Query: 150 DLSDVHSPPKSPEGKTSAQTTPSKKANDEANQSDTSVSLSEPKSKSSLHLLSHETKIGSF 209
D S+ S + S+ ++ S +ND +N SD+S S + S +S S
Sbjct: 760 DSSNSSDSSDSSDSSDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSD 819
Query: 210 LSN-----RTLDGKDKAGLCPDEDDME-GDSFFDDPIPKPEKTYGLRKEPRKQAGSLASL 263
SN + D D + D + D D + + + + + +
Sbjct: 820 SSNSSDSSNSSDSSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDS 879
Query: 264 SDAPPLKSGLSSLAGAPSLKDSESKRGNTV-LKDLKLISDKIGSLGLGTGEDDDYVDDFN 322
SD+ +S + S S+S ++ D S+ S D+ D +
Sbjct: 880 SDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSS 939
Query: 323 STSHRSEKSEISIGEEIEEDLSVEIDDINTSDKLDDLTQDLT-VSQLSDVAD 373
++S S+ S+ S D S D N+SD D + D + S SD +D
Sbjct: 940 NSSDSSDSSDSS----NSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSD 987
Score = 34.3 bits (77), Expect = 0.19
Identities = 44/222 (19%), Positives = 77/222 (34%), Gaps = 30/222 (13%)
Query: 152 SDVHSPPKSPEGKTSAQTTPSKKANDEANQSDTSVSLSEPKSKSSLHLLSHETKIGSFLS 211
+D + S +GK+ + + S +++ ++ SD+S S S + SS
Sbjct: 534 NDDNDKSDSGKGKSDSSDSDSSDSSNSSDSSDSSDSDSSDSNSSS--------------- 578
Query: 212 NRTLDGKDKAGLCPDEDDMEGDSFFDDPIPKPEKTYGLRKEPRKQAGSLASLSDAPPLKS 271
D D + DS + + + + SD+ KS
Sbjct: 579 --------------DSDSSDSDSSDSSDSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSKS 624
Query: 272 GLSSLAGAPSLKDSESKRGNTVLKDLKLISDKIGSLGLGTGEDDDYVDDFNSTSHRSEKS 331
S S DS+S ++ D SD S D D + +S S+ S
Sbjct: 625 DSSKSESDSSDSDSKSDSSDSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSSDSS 684
Query: 332 EISIGEEIEEDLSVEIDDINTSDKLDDLTQDLTVSQLSDVAD 373
S + D S + ++SD D + D + S S+ +D
Sbjct: 685 NSSDSSD-SSDSSNSSESSDSSDSSDSDSSDSSDSSNSNSSD 725
>gi|148233596 LPS-responsive vesicle trafficking, beach and anchor
containing [Homo sapiens]
Length = 2863
Score = 37.4 bits (85), Expect = 0.022
Identities = 46/204 (22%), Positives = 87/204 (42%), Gaps = 11/204 (5%)
Query: 143 TTGEGALDLSDVHSPPKSPEGKTSAQTTPS-KKANDEANQSDTSVSLSEPKSKSSLHLLS 201
TTG+ ++ +S+V + SP + +++ K+ E + D V L S + L
Sbjct: 1067 TTGKDSMTVSEVTASISSPSEEDASEMPEFLDKSIVEEEEDDDYVELKVEGSPTEEANLP 1126
Query: 202 HETKIGSFLSNRTLDGKDKAGLCPDEDDMEGDSFFDDPIPKPEKTYGLRKEPRKQAG--- 258
E + S LS + +K + ++D + F + P EK + K +G
Sbjct: 1127 TELQDNS-LSPAASEAGEKLDMFGNDDKL----IFQEGKPVTEKQTDTETQDSKDSGIQT 1181
Query: 259 SLASLSDAPPLKSGLSSLAGAPSLKD--SESKRGNTVLKDLKLISDKIGSLGLGTGEDDD 316
AS S A ++ +S +A L E K+ + ++ KLI+D GS+ + E
Sbjct: 1182 MTASGSSAMSPETTVSQIAVESDLGQMLEEGKKATNLTRETKLINDCHGSVSEASSEQKI 1241
Query: 317 YVDDFNSTSHRSEKSEISIGEEIE 340
D ++ + +E+ E+ +E
Sbjct: 1242 AKLDVSNVATDTERLELKASPNVE 1265
>gi|42518068 trans-golgi network protein 2 [Homo sapiens]
Length = 437
Score = 36.2 bits (82), Expect = 0.050
Identities = 29/140 (20%), Positives = 65/140 (46%), Gaps = 14/140 (10%)
Query: 136 QQKEKGPTTGEGALDLSDVHSPPKSPEGKTSAQTTPSKKANDEANQSDTSVSLSEPKS-- 193
+Q K + GA + + P KS + +++ +P+K ++ ++ D S +S P
Sbjct: 214 KQTPKDGSNKSGAEEQGPIDGPSKSGAEEQTSKDSPNKVVPEQPSRKDHSKPISNPSDNK 273
Query: 194 ---KSSLHLLSHETKIGSFLSNRTLDGKDKAGLCPDEDDMEGDSFFDDPIPK-------- 242
K+ + L+ + K+ + +T G++ + P +++++ +D PK
Sbjct: 274 ELPKADTNQLADKGKLSPH-AFKTESGEETDLISPPQEEVKSSEPTEDVEPKEAEDDDTG 332
Query: 243 PEKTYGLRKEPRKQAGSLAS 262
PE+ ++E K +GS +S
Sbjct: 333 PEEGSPPKEEKEKMSGSASS 352
>gi|4503179 oral-facial-digital syndrome 1 [Homo sapiens]
Length = 1012
Score = 35.4 bits (80), Expect = 0.085
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 15/100 (15%)
Query: 4 TAAAVVAEEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNESLK 63
T A V++++ ELR L QT ++ G+L+ +K +LR + L P+++ L+
Sbjct: 9 TVADVLSQD--ELRKKLYQTFKDRGILDTLKTQLRNQLIHELMH--------PVLSGELQ 58
Query: 64 KFLNTKDGRLVA-----SLVAEFLQFFNLDFTLAVFQPET 98
+ +G + SLVA+ LQ +++L+VF PE+
Sbjct: 59 PRSISVEGSSLLIGASNSLVADHLQRCGYEYSLSVFFPES 98
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 35.4 bits (80), Expect = 0.085
Identities = 32/143 (22%), Positives = 54/143 (37%), Gaps = 14/143 (9%)
Query: 138 KEKGPTTGEGALDL---------SDVHSPPKSPEGKTSAQTTPSKKANDEANQSDTSVSL 188
+E+G G+G S SP S +S+ ++ S ++ ++ S +S S
Sbjct: 2584 EEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2643
Query: 189 SEPKSKSSLHLLSHETKIGSFLSNRTLDGKDKAGLCPDEDDMEGDSFFDDPIPKPEKTYG 248
S S SS S + S S+ + D+ C +D+ P P
Sbjct: 2644 SSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAA-----PAPTAGPSAQAA 2698
Query: 249 LRKEPRKQAGSLASLSDAPPLKS 271
L + KQAG + +P K+
Sbjct: 2699 LPTKATKQAGKARPSAHSPGKKT 2721
>gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 1 [Homo sapiens]
Length = 559
Score = 34.3 bits (77), Expect = 0.19
Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 139 EKGPTTGEGALDLSDVHSPPKSPEGKTSAQTTPSKKANDEANQSDTSVSLSEPKSKSSLH 198
E P + AL++ + +S ++ SAQ++PS ++ + SD+ S+ S+ L
Sbjct: 344 ESEPREAKKALEVEESNSEDEASFKSESAQSSPSNSSSSSDSSSDSDFEPSQNHSQGPLR 403
Query: 199 LLSHETKIGSFLSNRTLDGKDKAGLC-PDED------DMEGDSFFDDPIPKPE 244
+ + + + + G++ AG P D D E D+ D +P E
Sbjct: 404 SMVEDLQSEESDEDDSSSGEEAAGKTNPGRDSRLSFSDSESDNSADSSLPSRE 456
Score = 30.0 bits (66), Expect = 3.6
Identities = 51/239 (21%), Positives = 82/239 (34%), Gaps = 9/239 (3%)
Query: 138 KEKGPTTGEGALDLSDVHSPPKSPEGKTSAQTTPSKKANDEANQSDTSVSLSE---PKSK 194
KE T+ + P K E K+S++ ++A + DTS L E PK +
Sbjct: 186 KESSKTSKPHKVTKEHRERPRKDSESKSSSKELEREQAK---SSKDTSRKLGEGRLPKEE 242
Query: 195 SSLHLLSHETKIGSFLSNRTLDGKDKAGLCPDEDDMEGDSFFDDPIPKPEKTYGLRKEPR 254
+ + + L L+ G P + P +K+ +
Sbjct: 243 KAPPPKAAFKEPKMALKETKLESTSPKGGPPPPPPPPPRASSKRPATADSPKPSAKKQKK 302
Query: 255 KQAGSLASLSDAPPLKSGLSSLAGAPSLKDSESKRGNTVLKDLKLISDKIGSLGLGTGED 314
+ S P S SS + KD S RG V + + K +L +
Sbjct: 303 SSSKGSRSAPGTSPRTSSSSSFSDKKPAKDKSSTRGEKVKAESEPREAK-KALEVEESNS 361
Query: 315 DDYVDDFNSTSHRSEKSEISIGEEIEEDLSVEIDDINTSDKLDDLTQDLTVSQLSDVAD 373
+D F S S +S S S + D E ++ L + +DL S+ SD D
Sbjct: 362 EDEA-SFKSESAQSSPSNSSSSSDSSSDSDFEPSQNHSQGPLRSMVEDLQ-SEESDEDD 418
>gi|217416394 hyaluronan-mediated motility receptor isoform b [Homo
sapiens]
Length = 724
Score = 34.3 bits (77), Expect = 0.19
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 277 AGAPSLKDSESKRGNTVLKDLKLISDKIGSLGLGTGEDDDYVDDFNSTSHRSEKSEISIG 336
A A +K SESK KDLK++ +I L G D + D + EK E +
Sbjct: 64 ASARKVKSSESKESQKNDKDLKILEKEIRVLLQERGAQDRRIQDLET---ELEKMEARLN 120
Query: 337 EEIEEDLSVEIDDINTSDKLDDLTQ--DLTVSQLSD 370
+ E S+ ++ +L +LT+ +L S+ S+
Sbjct: 121 AALREKTSLSANNATLEKQLIELTRTNELLKSKFSE 156
>gi|5032055 reticulon 2 isoform A [Homo sapiens]
Length = 545
Score = 34.3 bits (77), Expect = 0.19
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 13/119 (10%)
Query: 236 FDDPIPKPEKTYGLRKEPRKQAGSLASLSDAPPLKSGLSSLAGAPSLKDSES--KRGNT- 292
FD + + + PR Q S++ D P S SL PSL S +RG+
Sbjct: 69 FDGVVGSGGRRDSTARRPRPQGRSVSEPRDQHPQPSLGDSLESIPSLSQSPEPGRRGDPD 128
Query: 293 -------VLKDLKLISDKIGSLGLGTGEDDDYVDDFNSTSHRSEKSE---ISIGEEIEE 341
L+DL+L D +G + GTG +D ++ E E + GE EE
Sbjct: 129 TAPPSERPLEDLRLRLDHLGWVARGTGSGEDSSTSSSTPLEDEEPQEPNRLETGEAGEE 187
>gi|46255005 reticulon 2 isoform B [Homo sapiens]
Length = 472
Score = 34.3 bits (77), Expect = 0.19
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 13/119 (10%)
Query: 236 FDDPIPKPEKTYGLRKEPRKQAGSLASLSDAPPLKSGLSSLAGAPSLKDSES--KRGNT- 292
FD + + + PR Q S++ D P S SL PSL S +RG+
Sbjct: 69 FDGVVGSGGRRDSTARRPRPQGRSVSEPRDQHPQPSLGDSLESIPSLSQSPEPGRRGDPD 128
Query: 293 -------VLKDLKLISDKIGSLGLGTGEDDDYVDDFNSTSHRSEKSE---ISIGEEIEE 341
L+DL+L D +G + GTG +D ++ E E + GE EE
Sbjct: 129 TAPPSERPLEDLRLRLDHLGWVARGTGSGEDSSTSSSTPLEDEEPQEPNRLETGEAGEE 187
>gi|47933392 cytohesin 1 interacting protein [Homo sapiens]
Length = 359
Score = 32.7 bits (73), Expect = 0.55
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 200 LSHETKIGSFLSNRTLDGKDKAGLCPDEDDMEG----DSFFDDP--IPKPEKTYGLRKEP 253
LS E+ S+LS+ T+D +D C ED G + DD IPK + R
Sbjct: 240 LSSESSCKSWLSSMTMDSEDGYQTCVSEDSSRGAFSRQTSTDDECFIPKEGDDFLRRSSS 299
Query: 254 R--KQAGSLASLSDAPPLKSGLSSLAGAPSLKDSESKRGNTVLKDLKLI 300
R + + +S S +P + LSS+ G K S++G+ + LK I
Sbjct: 300 RRNRSISNTSSGSMSPLWEGNLSSMFGTLPRK---SRKGSVRKQLLKFI 345
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 32.7 bits (73), Expect = 0.55
Identities = 36/133 (27%), Positives = 52/133 (39%), Gaps = 21/133 (15%)
Query: 155 HSPPKSPEGKTSAQTTPSKKANDEANQSDTSVSLSEPKSKSSLHLLSHETKIGSFLSNRT 214
+SP P+ +T++ P K+ + VS S P + S S TK S +
Sbjct: 604 YSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRS----SPVTKRRS----PS 655
Query: 215 LDGKDKAGLCPDEDDMEGDSFFDDPIPKPEKTYGLRKEPRKQAGSLASLSDAPPLKSGLS 274
L K + G P E S P+P K + PR S S PP++ G S
Sbjct: 656 LSSKHRKGSSPSRSTREARS------PQPNKRHSPSPRPRAPQTS----SSPPPVRRGAS 705
Query: 275 SLAGAPSLKDSES 287
S +P + S S
Sbjct: 706 S---SPQRRQSPS 715
>gi|157738619 smoothelin-like 1 [Homo sapiens]
Length = 512
Score = 32.7 bits (73), Expect = 0.55
Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 30/153 (19%)
Query: 133 RRCQQKEKGPTTGEGALDLSDVHSP-PKSP----EGKTSAQ----------TTPSKKAND 177
++ ++KE P +G+ A D +D P PK+ + KT++Q T P +KA D
Sbjct: 155 QKAEEKEAKPESGQKA-DANDRDKPEPKATVEEEDAKTASQEETGQRKECSTEPKEKATD 213
Query: 178 EANQSDTSVSLSEPKSKSSLHLL--SHETKIGSFLSNRTLDGKDKAGLCPDEDDMEGDSF 235
E ++++ ++ E ++K+ E K G + D K++A D ++ E S
Sbjct: 214 EEAKAESQKAVVEDEAKAEPKEPDGKEEAKHG---AKEEADAKEEA---EDAEEAEPGS- 266
Query: 236 FDDPIPKPEKTYGLRKEPRKQAGSLASLSDAPP 268
P E+ + KEP AG + S + P
Sbjct: 267 -----PSEEQEQDVEKEPEGGAGVIPSSPEEWP 294
>gi|44955929 calmodulin regulated spectrin-associated protein 1-like
1 [Homo sapiens]
Length = 1478
Score = 32.7 bits (73), Expect = 0.55
Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 31/177 (17%)
Query: 134 RCQQKEKGPTTGEGALDLSDVHSPPKSPEGK-TSAQTTP--SKKANDEANQSDTSVSLSE 190
R ++KE T G+ + L+D+ ++P+ K + TTP +K + A+ S+ +++ E
Sbjct: 817 RAKEKESQKTDGQRSKSLADIKESMENPQAKWLKSPTTPIDPEKQWNLASPSEETLNEGE 876
Query: 191 --------PKSKSSLHLLSHETKIGSFLSNRTLDGKDKAGLCPDEDDMEGDSFFDDPIPK 242
K SSLH L E + S + +++ P P
Sbjct: 877 ILEYTKSIEKLNSSLHFLQQEMQRLSLQQEMLMQMREQQSW-----------VISPPQPS 925
Query: 243 PEKTYGLRKEPRKQAGSLASL----SDAP----PLKSGLSSLAGAPSLKDSESKRGN 291
P+K K P KQAG +++ SD+P P + + + S+K + R N
Sbjct: 926 PQKQIRDFK-PSKQAGLSSAIAPFSSDSPRPTHPSPQSSNRKSASFSVKSQRTPRPN 981
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 32.0 bits (71), Expect = 0.94
Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 17/127 (13%)
Query: 157 PPKSPEGKTSAQTTPSKKANDEANQSDTSVSLSEPKSKSSLHLLSHETK-IGSFLSNRTL 215
PP +P K S T P KKA ++ ++S S+ SS TK + S + +
Sbjct: 294 PPSAPPPKKSLGTQPPKKAVEKQQPVESSEDSSDESDSSSEEEKKPPTKAVVSKATTKPP 353
Query: 216 DGKDKAGLCPDEDDMEGDSFFDDPIPKPEKTYGLRKEPRKQAGSLASLSDAPPL--KSGL 273
K A D D DS DD + P K AG+ + S+ P + KS
Sbjct: 354 PAKKAAESSSDSSD--SDSSEDD------------EAPSKPAGTTKNSSNKPAVTTKSPA 399
Query: 274 SSLAGAP 280
A AP
Sbjct: 400 VKPAAAP 406
Score = 29.3 bits (64), Expect = 6.1
Identities = 41/165 (24%), Positives = 61/165 (36%), Gaps = 14/165 (8%)
Query: 128 LLEVIRRCQQKEKGPTTGEGALDLSDVHS----PPKSPEGKTSAQTTPSKKANDEANQSD 183
L EV + + A L D++S K PE K A +KKA +A+ SD
Sbjct: 27 LSEVANKFAKATGATQQDANASSLLDIYSFWLKSAKVPERKLQANGPVAKKAKKKASSSD 86
Query: 184 TSVSLSEPKSKSSLHLLSHETKIGSFLSNRTLDGKDKAGLCPDEDDMEGDSFFDDPIPKP 243
SE S+ + K + + R KA E +S DD +
Sbjct: 87 -----SEDSSEEEEEVQGPPAKKAAVPAKRVGLPPGKAAAKASESSSSEES-SDDDDEED 140
Query: 244 EKTYGLRKEPRKQAGSLASLSDAPPLKSGLSSLAGAPSLKDSESK 288
+K ++K + Q A + APP K+ S S +D K
Sbjct: 141 QKKQPVQKGVKPQ----AKAAKAPPKKAKSSDSDSDSSSEDEPPK 181
>gi|224809582 RAP1 GTPase activating protein isoform c [Homo
sapiens]
Length = 663
Score = 32.0 bits (71), Expect = 0.94
Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 5/137 (3%)
Query: 129 LEVIRRCQQKEKGPTTGEGALDLSDVHSPPKSPEGKTSA---QTTPSKKANDEANQSDTS 185
+E I+ Q+K + P G+ D V PKS T + T +A A +++
Sbjct: 503 IENIQEVQEKRESPPAGQKTPDSGHVSQEPKSENSSTQSSPEMPTTKNRAETAAQRAEAL 562
Query: 186 VSLSEPKSKSSLHLLSHETKIGSFLSNRTLDGKDKAGLCPDEDDMEGDSFFDDPIPKPE- 244
S S +S E G + L+ +G D ++ +D +
Sbjct: 563 KDFSRSSSSASSFASVVEETEGVDGEDTGLESVSSSGTPHKRDSFIYSTWLEDSVSTTSG 622
Query: 245 -KTYGLRKEPRKQAGSL 260
+ G + P AG L
Sbjct: 623 GSSPGPSRSPHPDAGKL 639
>gi|224809578 RAP1 GTPase activating protein isoform a [Homo
sapiens]
Length = 727
Score = 32.0 bits (71), Expect = 0.94
Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 5/137 (3%)
Query: 129 LEVIRRCQQKEKGPTTGEGALDLSDVHSPPKSPEGKTSA---QTTPSKKANDEANQSDTS 185
+E I+ Q+K + P G+ D V PKS T + T +A A +++
Sbjct: 567 IENIQEVQEKRESPPAGQKTPDSGHVSQEPKSENSSTQSSPEMPTTKNRAETAAQRAEAL 626
Query: 186 VSLSEPKSKSSLHLLSHETKIGSFLSNRTLDGKDKAGLCPDEDDMEGDSFFDDPIPKPE- 244
S S +S E G + L+ +G D ++ +D +
Sbjct: 627 KDFSRSSSSASSFASVVEETEGVDGEDTGLESVSSSGTPHKRDSFIYSTWLEDSVSTTSG 686
Query: 245 -KTYGLRKEPRKQAGSL 260
+ G + P AG L
Sbjct: 687 GSSPGPSRSPHPDAGKL 703
>gi|34452686 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 31.6 bits (70), Expect = 1.2
Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 12/185 (6%)
Query: 110 LARDLGIIEAEGTVGGPLLLEVIRRCQQKEKGP-----TTGEGALDLSDVHSPPKSPEGK 164
L RD ++ GT G E++RR QQ ++GP G DV + +
Sbjct: 46 LMRDNNLL---GTPGESTEEELLRRLQQIKEGPPPQNSDENRGGDSSDDVSNGDSIIDWL 102
Query: 165 TSA-QTTPSKKANDEANQSDTSVSLSEPKSKSSLHLLSHETKIGSFLSNRTLDGKDKAGL 223
S QT + ++ NQS +VS + P S L + N + + A
Sbjct: 103 NSVRQTGNTTRSGQRGNQSWRAVSRTNPNSGDFRFSLEINVNRNNGSQNSENENEPSARR 162
Query: 224 CPDEDDMEGDSFFDDPIPKPEKTYGLRKEPRKQAGSLASLSDAPPLKSGLSSLAGAPSLK 283
E ++E +S P+ E T + R + S +L++ PP + + + +P +
Sbjct: 163 SSGE-NVENNSQRQVENPRSESTSA--RPSRSERNSTEALTEVPPTRGQRRARSRSPDHR 219
Query: 284 DSESK 288
+ ++
Sbjct: 220 RTRAR 224
>gi|34452684 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 31.6 bits (70), Expect = 1.2
Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 12/185 (6%)
Query: 110 LARDLGIIEAEGTVGGPLLLEVIRRCQQKEKGP-----TTGEGALDLSDVHSPPKSPEGK 164
L RD ++ GT G E++RR QQ ++GP G DV + +
Sbjct: 46 LMRDNNLL---GTPGESTEEELLRRLQQIKEGPPPQNSDENRGGDSSDDVSNGDSIIDWL 102
Query: 165 TSA-QTTPSKKANDEANQSDTSVSLSEPKSKSSLHLLSHETKIGSFLSNRTLDGKDKAGL 223
S QT + ++ NQS +VS + P S L + N + + A
Sbjct: 103 NSVRQTGNTTRSGQRGNQSWRAVSRTNPNSGDFRFSLEINVNRNNGSQNSENENEPSARR 162
Query: 224 CPDEDDMEGDSFFDDPIPKPEKTYGLRKEPRKQAGSLASLSDAPPLKSGLSSLAGAPSLK 283
E ++E +S P+ E T + R + S +L++ PP + + + +P +
Sbjct: 163 SSGE-NVENNSQRQVENPRSESTSA--RPSRSERNSTEALTEVPPTRGQRRARSRSPDHR 219
Query: 284 DSESK 288
+ ++
Sbjct: 220 RTRAR 224
>gi|19923592 oxysterol binding protein-like 11 [Homo sapiens]
Length = 747
Score = 31.6 bits (70), Expect = 1.2
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 267 PPLKSGLSSLAGAPSLKDSESKRGNTVLKDLKLISDKIGSLGLGTGEDDDYVDDFNSTSH 326
PPLKS SLA + + S+ + + + K+ SL T D++ +
Sbjct: 166 PPLKSRSFSLASSSNSPISQRRPSQNAISFFNVGHSKLQSLSKRTNLPPDHLVEV----- 220
Query: 327 RSEKSEISIGEEIEEDLSVEIDDINTSDKLDDLTQDLTVSQLSDVA 372
+ +S E + DL I+ + TS L L QDL + + + +A
Sbjct: 221 ---REMMSHAEGQQRDLIRRIECLPTSGHLSSLDQDLLMLKATSMA 263
>gi|59814411 hypothetical protein LOC253725 [Homo sapiens]
Length = 1318
Score = 31.6 bits (70), Expect = 1.2
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 3/141 (2%)
Query: 217 GKDKAGLCPDEDDMEGDSFFDDPIPKPEKTYGLRKEPRKQAGSLASLSDAPPLKSGLSSL 276
G GL D+D + D FF P KP KT ++ L + S +++
Sbjct: 444 GPPPTGLFDDDDGDDDDDFFSAPHSKPSKTRKVQSTADIFGDEEGDLFKEKAVASPEATV 503
Query: 277 AGAPSLK-DSESKRGNTVLKDLKLISDKIGSLGLGTGEDDDYVDDFNSTSHRSEKSEISI 335
+ K +E K + K+LK S+ GL + E+D D F+S S + K +
Sbjct: 504 SQTDENKARAEKKVTLSYSKNLKPSSETKTQKGLFSDEEDS-EDLFSSQSASNLKGASLL 562
Query: 336 GEEIEEDLSVEIDDINTSDKL 356
++ +S+ DD + D L
Sbjct: 563 PGKLPTSVSL-FDDEDEEDNL 582
>gi|67906195 ankyrin repeat and sterile alpha motif domain
containing 6 [Homo sapiens]
Length = 871
Score = 31.2 bits (69), Expect = 1.6
Identities = 45/214 (21%), Positives = 75/214 (35%), Gaps = 4/214 (1%)
Query: 136 QQKEKGPTTGEGALDLSDVHSPPKSPE-GKTSAQTTPSKKANDEANQSDTSVSLSEPKSK 194
Q+ +G G G D + V P K P ++ A + S N + S S + +
Sbjct: 592 QRASRGHPVGGGGTDTTPVR-PVKFPSLPRSPASSANSGNFNHSPHSSGGSSGVGVSRHG 650
Query: 195 SSLHLLSHETKIGSFLSNRTLDGKDKAGLCPDEDDMEGDSFFDDPIPKPEKTYGLRKEPR 254
L L I + LS K AGL + P P +
Sbjct: 651 GEL-LNRSGGSIDNVLSQIAAQRKKAAGLLEQKPSHRSSPVGPAPGSSPSELPASPAGGS 709
Query: 255 KQAGSLASLSDAPPLKSGLSSLAGAPSLKDSESKRGNTVLKDLKLISDKIGSLGLGTGED 314
G S PP + +S + +P+L S S +G+T + S S G G
Sbjct: 710 APVGKKLETSKRPPSGTSTTSKSTSPTLTPSPSPKGHTAESSVSSSSSHRQSKSSG-GSS 768
Query: 315 DDYVDDFNSTSHRSEKSEISIGEEIEEDLSVEID 348
+ D + + +K + + I E+ V+++
Sbjct: 769 SGTITDEDELTGILKKLSLEKYQPIFEEQEVDME 802
>gi|154090959 hypothetical protein LOC55747 [Homo sapiens]
Length = 1253
Score = 31.2 bits (69), Expect = 1.6
Identities = 50/221 (22%), Positives = 83/221 (37%), Gaps = 11/221 (4%)
Query: 145 GEGALDLSDVHS------PPKSPEGKTSAQTTPSKKANDEANQSDTSVSLSEPK--SKSS 196
G+G D D S P G + + + S K + SV L + +S
Sbjct: 276 GKGLFDDEDEESDLFTEAPQDRQAGASVKEESSSSKPGKKIPAGAVSVFLGDTDVFGAAS 335
Query: 197 LHLLSHETKIGSFLSNRTLDGKDKAGLCPDEDDMEGDSFFDDPIPKPEKTYGLRKEPRKQ 256
+ + K ++ G GL D+D + D FF P KP KT ++
Sbjct: 336 VPSMKEPQKPEQPTPRKSPYGPPPTGLFDDDDGDDDDDFFSAPHSKPSKTGKVQSTADIF 395
Query: 257 AGSLASLSDAPPLKSGLSSLAGAPSLK-DSESKRGNTVLKDLKLISDKIGSLGLGTGEDD 315
L + S ++++ K +E K + K+LK S+ GL + E+D
Sbjct: 396 GDEEGDLFKEKAVASPEATVSQTDENKARAEKKVTLSSSKNLKPSSETKTQKGLFSDEED 455
Query: 316 DYVDDFNSTSHRSEKSEISIGEEIEEDLSVEIDDINTSDKL 356
D F+S S K + ++ +S+ DD + D L
Sbjct: 456 S-EDLFSSQSASKLKGASLLPGKLPTSVSL-FDDEDEEDNL 494
>gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]
Length = 1960
Score = 30.8 bits (68), Expect = 2.1
Identities = 44/205 (21%), Positives = 85/205 (41%), Gaps = 25/205 (12%)
Query: 162 EGKTSAQTTPSKKANDEANQS---DTSVSLSEPKSKSSLHLLSHETKIGSFLSNRTLDGK 218
E +++ Q +K EA + + L + K + E +I F +N T + +
Sbjct: 954 EEESARQKLQLEKVTTEAKLKKLEEEQIILEDQNCKLAKEKKLLEDRIAEFTTNLTEEEE 1013
Query: 219 DKAGLCPDEDDMEGD-SFFDDPIPKPEKT-YGLRKEPRKQAGSLASLSDA--------PP 268
L ++ E + ++ + + EK L K RK G LSD
Sbjct: 1014 KSKSLAKLKNKHEAMITDLEERLRREEKQRQELEKTRRKLEGDSTDLSDQIAELQAQIAE 1073
Query: 269 LKSGLSS----LAGAPSLKDSESKRGNTVLKDLKLISDKIGSLGLGTGEDDDYVDDFNST 324
LK L+ L A + + E+ + N LK ++ + +I L + ++ ++
Sbjct: 1074 LKMQLAKKEEELQAALARVEEEAAQKNMALKKIRELESQISEL-------QEDLESERAS 1126
Query: 325 SHRSEKSEISIGEEIEEDLSVEIDD 349
+++EK + +GEE+E L E++D
Sbjct: 1127 RNKAEKQKRDLGEELEA-LKTELED 1150
Score = 29.3 bits (64), Expect = 6.1
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 12/122 (9%)
Query: 2 AATAAAVVAEEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNES 61
A A +E EL D + + + K L A + EE E+ + T L+N+
Sbjct: 1692 AERAKRQAQQERDELADEIANSSGKGALALEEKRRLEARIAQLEEELEEEQGNTELINDR 1751
Query: 62 LKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRENLARDLGIIEAEG 121
LKK N + ++ L NL+ + A Q + Q LE R+N + + E EG
Sbjct: 1752 LKK-ANLQIDQINTDL--------NLERSHA--QKNENARQQLE-RQNKELKVKLQEMEG 1799
Query: 122 TV 123
TV
Sbjct: 1800 TV 1801
>gi|4502805 chromogranin A precursor [Homo sapiens]
Length = 457
Score = 30.8 bits (68), Expect = 2.1
Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 16/142 (11%)
Query: 250 RKEPRKQAGSLASLSDAPPLKSGLSSLAGA-PSLKDSESKRGNTVLKDLKLISDKIGSLG 308
R+E ++ + +A P + G + + PSL E ++G + + L D G G
Sbjct: 227 REEEEEEEEEAEAGEEAVPEEEGPTVVLNPHPSLGYKEIRKGES--RSEALAVDGAGKPG 284
Query: 309 LGTGEDDDYVDDFNSTSHRSEKSEISIG-------------EEIEEDLSVEIDDINTSDK 355
+D + + + + E+ E+++ E+ EE LS E +D K
Sbjct: 285 AEEAQDPEGKGEQEHSQQKEEEEEMAVVPQGLFRGGKSGELEQEEERLSKEWEDSKRWSK 344
Query: 356 LDDLTQDLTVSQLSDVADYLED 377
+D L ++LT + + + ED
Sbjct: 345 MDQLAKELTAEKRLEGQEEEED 366
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 30.8 bits (68), Expect = 2.1
Identities = 37/143 (25%), Positives = 54/143 (37%), Gaps = 14/143 (9%)
Query: 140 KGPTTGEGALDLSDVHSPPKSPEGKTSAQTTPSKKANDEANQSDTSVSLSEPKSKSSLHL 199
K PT+ G+L D H PP G +S S +D + + + S SL L
Sbjct: 760 KFPTSAPGSLS-PDAHLPPSQLLGSSSDSLPTSPPPDDSLSLKVFRCLVCQAFSTDSLEL 818
Query: 200 LSHETKIGSFLSNRTLDGKDKAG------LCPDEDDMEGDSFFDDPIPKPEKTYGLRKEP 253
L + IG L + K+ AG LC ++ + K + Y L
Sbjct: 819 LLYHCSIGRSLPE--AEWKEVAGDTHRCKLCCYGTQLKANFQLHLKTDKHAQKYQLAAHL 876
Query: 254 RKQAGSL-----ASLSDAPPLKS 271
R+ G++ ASL D P S
Sbjct: 877 REGGGAMGTPSPASLGDGAPYGS 899
>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 30.8 bits (68), Expect = 2.1
Identities = 37/143 (25%), Positives = 54/143 (37%), Gaps = 14/143 (9%)
Query: 140 KGPTTGEGALDLSDVHSPPKSPEGKTSAQTTPSKKANDEANQSDTSVSLSEPKSKSSLHL 199
K PT+ G+L D H PP G +S S +D + + + S SL L
Sbjct: 676 KFPTSAPGSLS-PDAHLPPSQLLGSSSDSLPTSPPPDDSLSLKVFRCLVCQAFSTDSLEL 734
Query: 200 LSHETKIGSFLSNRTLDGKDKAG------LCPDEDDMEGDSFFDDPIPKPEKTYGLRKEP 253
L + IG L + K+ AG LC ++ + K + Y L
Sbjct: 735 LLYHCSIGRSLPE--AEWKEVAGDTHRCKLCCYGTQLKANFQLHLKTDKHAQKYQLAAHL 792
Query: 254 RKQAGSL-----ASLSDAPPLKS 271
R+ G++ ASL D P S
Sbjct: 793 REGGGAMGTPSPASLGDGAPYGS 815
>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 30.8 bits (68), Expect = 2.1
Identities = 37/143 (25%), Positives = 54/143 (37%), Gaps = 14/143 (9%)
Query: 140 KGPTTGEGALDLSDVHSPPKSPEGKTSAQTTPSKKANDEANQSDTSVSLSEPKSKSSLHL 199
K PT+ G+L D H PP G +S S +D + + + S SL L
Sbjct: 676 KFPTSAPGSLS-PDAHLPPSQLLGSSSDSLPTSPPPDDSLSLKVFRCLVCQAFSTDSLEL 734
Query: 200 LSHETKIGSFLSNRTLDGKDKAG------LCPDEDDMEGDSFFDDPIPKPEKTYGLRKEP 253
L + IG L + K+ AG LC ++ + K + Y L
Sbjct: 735 LLYHCSIGRSLPE--AEWKEVAGDTHRCKLCCYGTQLKANFQLHLKTDKHAQKYQLAAHL 792
Query: 254 RKQAGSL-----ASLSDAPPLKS 271
R+ G++ ASL D P S
Sbjct: 793 REGGGAMGTPSPASLGDGAPYGS 815
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.128 0.343
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,098,785
Number of Sequences: 37866
Number of extensions: 691183
Number of successful extensions: 2626
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 2551
Number of HSP's gapped (non-prelim): 149
length of query: 379
length of database: 18,247,518
effective HSP length: 104
effective length of query: 275
effective length of database: 14,309,454
effective search space: 3935099850
effective search space used: 3935099850
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.