Guide to the Human Genome
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Name: C16orf63 Sequence: fasta or formatted (174aa) NCBI GI: 21389391
Description:

hypothetical protein LOC123811

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         12           1
 C cysteine            0.0          0           0
 D aspartate           6.3         11           3
 E glutamate           8.6         15           2
 F phenylalanine       3.4          6           1
 G glycine             4.6          8           1
 H histidine           3.4          6           1
 I isoleucine          5.2          9           1
 K lysine              7.5         13           2
 L leucine            13.8         24           2
 M methionine          1.1          2           1
 N asparagine          5.2          9           1
 P proline             5.7         10           1
 Q glutamine           4.0          7           1
 R arginine            6.9         12           2
 S serine              6.3         11           1
 T threonine           3.4          6           1
 V valine              5.2          9           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC123811 
FGFR1OP               0.066   FGFR1 oncogene partner isoform b 
FGFR1OP               0.066   FGFR1 oncogene partner isoform a 
OFD1                  0.044   oral-facial-digital syndrome 1 
TET1                  0.019   CXXC finger 6 
CUL4B                 0.009   cullin 4B isoform 2 
CUL4B                 0.009   cullin 4B isoform 1 
MYO7B                 0.009   myosin VIIB 
CDCP1                 0.009   CUB domain-containing protein 1 isoform 1 
OR52I2                0.009   olfactory receptor, family 52, subfamily I, member 2...
IVD                   0.006   isovaleryl Coenzyme A dehydrogenase isoform 2 [Homo...
IVD                   0.006   isovaleryl Coenzyme A dehydrogenase isoform 1 [Homo...
SP7                   0.006   osterix 
BIRC6                 0.006   baculoviral IAP repeat-containing 6 
RNF123                0.006   ring finger protein 123 
SFRS14                0.006   splicing factor, arginine/serine-rich 14 
SFRS14                0.006   splicing factor, arginine/serine-rich 14 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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