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Search of human proteins with 34996523
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|34996523 LY6/PLAUR domain containing 6 [Homo sapiens]
(171 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34996523 LY6/PLAUR domain containing 6 [Homo sapiens] 376 e-105
gi|40255210 LY6/PLAUR domain containing 6B [Homo sapiens] 130 4e-31
gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 39 0.003
gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 39 0.003
gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 39 0.003
gi|116812612 LY6/PLAUR domain containing 1 isoform a [Homo sapiens] 37 0.008
gi|11321575 lymphocyte antigen 6 complex, locus D [Homo sapiens] 35 0.024
gi|30794264 glycosylphosphatidylinositol anchored high density l... 34 0.054
gi|110735433 CD177 molecule [Homo sapiens] 34 0.054
gi|93004088 GPI-anchored metastasis-associated protein homolog [... 32 0.35
gi|164698546 LY6/PLAUR domain containing 5 isoform A [Homo sapiens] 30 0.78
gi|164663808 LY6/PLAUR domain containing 5 isoform B [Homo sapiens] 30 0.78
gi|19424138 sperm acrosomal membrane protein 14 [Homo sapiens] 30 1.0
gi|116734708 activin A receptor, type IIB precursor [Homo sapiens] 29 1.7
gi|42516574 tripartite motif-containing 41 isoform 2 [Homo sapiens] 29 1.7
gi|42516572 tripartite motif-containing 41 isoform 1 [Homo sapiens] 29 1.7
gi|7662018 PHD finger protein 3 [Homo sapiens] 29 2.3
gi|116812604 LY6/PLAUR domain containing 1 isoform b [Homo sapiens] 29 2.3
gi|31542331 cysteine-rich, angiogenic inducer, 61 [Homo sapiens] 28 3.0
gi|4501897 activin A receptor, type IIA precursor [Homo sapiens] 28 3.0
gi|24041035 notch 2 preproprotein [Homo sapiens] 28 3.9
gi|19743803 fibulin 5 precursor [Homo sapiens] 28 3.9
gi|27477095 nuclear receptor binding SET domain protein 1 isofor... 28 3.9
gi|19923586 nuclear receptor binding SET domain protein 1 isofor... 28 3.9
gi|194018544 testis expressed 101 isoform 1 [Homo sapiens] 28 3.9
gi|194097358 testis expressed 101 isoform 2 [Homo sapiens] 28 3.9
gi|130502162 RAS protein activator like 3 [Homo sapiens] 28 3.9
gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens] 28 3.9
gi|53759148 retinoblastoma binding protein 5 [Homo sapiens] 28 5.0
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 27 6.6
>gi|34996523 LY6/PLAUR domain containing 6 [Homo sapiens]
Length = 171
Score = 376 bits (965), Expect = e-105
Identities = 171/171 (100%), Positives = 171/171 (100%)
Query: 1 MEPGPALAWLLLLSLLADCLKAAQSRDFTVKDIIYLHPSTTPYPGGFKCFTCEKAADNYE 60
MEPGPALAWLLLLSLLADCLKAAQSRDFTVKDIIYLHPSTTPYPGGFKCFTCEKAADNYE
Sbjct: 1 MEPGPALAWLLLLSLLADCLKAAQSRDFTVKDIIYLHPSTTPYPGGFKCFTCEKAADNYE 60
Query: 61 CNRWAPDIYCPRETRYCYTQHTMEVTGNSISVTKRCVPLEECLSTGCRDSEHEGHKVCTS 120
CNRWAPDIYCPRETRYCYTQHTMEVTGNSISVTKRCVPLEECLSTGCRDSEHEGHKVCTS
Sbjct: 61 CNRWAPDIYCPRETRYCYTQHTMEVTGNSISVTKRCVPLEECLSTGCRDSEHEGHKVCTS 120
Query: 121 CCEGNICNLPLPRNETDATFATTSPINQTNGHPRCMSVIVSCLWLWLGLML 171
CCEGNICNLPLPRNETDATFATTSPINQTNGHPRCMSVIVSCLWLWLGLML
Sbjct: 121 CCEGNICNLPLPRNETDATFATTSPINQTNGHPRCMSVIVSCLWLWLGLML 171
>gi|40255210 LY6/PLAUR domain containing 6B [Homo sapiens]
Length = 207
Score = 130 bits (328), Expect = 4e-31
Identities = 55/101 (54%), Positives = 63/101 (62%)
Query: 41 TPYPGGFKCFTCEKAADNYECNRWAPDIYCPRETRYCYTQHTMEVTGNSISVTKRCVPLE 100
TP+P FKCFTCE A DNY CNRWA D +CP+ T+YC T H G S S+TK+C
Sbjct: 78 TPFPNSFKCFTCENAGDNYNCNRWAEDKWCPQNTQYCLTVHHFTSHGRSTSITKKCASRS 137
Query: 101 ECLSTGCRDSEHEGHKVCTSCCEGNICNLPLPRNETDATFA 141
EC GC S H C SCCEG ICN+ LP N T+A FA
Sbjct: 138 ECHFVGCHHSRDSEHTECRSCCEGMICNVELPTNHTNAVFA 178
>gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 38.5 bits (88), Expect = 0.003
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 16/90 (17%)
Query: 42 PYPGGFKCFTCEKAADNYECNRWAPDIYCPRETRYCYTQHTMEVTGNSISVTKRCVPLEE 101
P C C DN C + CP YC T T T + V+K CVP
Sbjct: 16 PLAQALDCHVCAYNGDN--CFN---PMRCPAMVAYCMTTRTY-YTPTRMKVSKSCVPR-- 67
Query: 102 CLSTGCRDSEHEG---HKVCTSCCEGNICN 128
C ++ ++G H TSCC+ ++CN
Sbjct: 68 -----CFETVYDGYSKHASTTSCCQYDLCN 92
>gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 38.5 bits (88), Expect = 0.003
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 16/90 (17%)
Query: 42 PYPGGFKCFTCEKAADNYECNRWAPDIYCPRETRYCYTQHTMEVTGNSISVTKRCVPLEE 101
P C C DN C + CP YC T T T + V+K CVP
Sbjct: 16 PLAQALDCHVCAYNGDN--CFN---PMRCPAMVAYCMTTRTY-YTPTRMKVSKSCVPR-- 67
Query: 102 CLSTGCRDSEHEG---HKVCTSCCEGNICN 128
C ++ ++G H TSCC+ ++CN
Sbjct: 68 -----CFETVYDGYSKHASTTSCCQYDLCN 92
>gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 38.5 bits (88), Expect = 0.003
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 16/90 (17%)
Query: 42 PYPGGFKCFTCEKAADNYECNRWAPDIYCPRETRYCYTQHTMEVTGNSISVTKRCVPLEE 101
P C C DN C + CP YC T T T + V+K CVP
Sbjct: 16 PLAQALDCHVCAYNGDN--CFN---PMRCPAMVAYCMTTRTY-YTPTRMKVSKSCVPR-- 67
Query: 102 CLSTGCRDSEHEG---HKVCTSCCEGNICN 128
C ++ ++G H TSCC+ ++CN
Sbjct: 68 -----CFETVYDGYSKHASTTSCCQYDLCN 92
>gi|116812612 LY6/PLAUR domain containing 1 isoform a [Homo sapiens]
Length = 141
Score = 37.0 bits (84), Expect = 0.008
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
Query: 48 KCFTCEKAADNYECNRWAPDIYCPRETRYCYTQHTMEVTGNSISVTKRCVPLEECL--ST 105
+C+ CE+ N +C+ + C + + ME + I K C CL S
Sbjct: 24 QCYQCEEFQLNNDCSSPEFIVNCTVNVQDMCQKEVMEQSAG-IMYRKSCASSAACLIASA 82
Query: 106 GCRDSEHEG--HKVCTSCCEGNICNLPLPRNETDATFATTSPINQT 149
G + G + VC SCC +CN P P+ + A + T
Sbjct: 83 GYQSFCSPGKLNSVCISCCNTPLCNGPRPKKRGSSASALRPGLRTT 128
>gi|11321575 lymphocyte antigen 6 complex, locus D [Homo sapiens]
Length = 128
Score = 35.4 bits (80), Expect = 0.024
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 48 KCFTCEKAADNYECNRWAPDIYCPRETRYCYTQHTMEVTGNSISVTKRCVPLEECLSTGC 107
+C C +++ C + CP +R+C T +T+E ++ V K C E C +
Sbjct: 22 RCHVCTSSSN---CKH---SVVCPASSRFCKTTNTVEPLRGNL-VKKDCA--ESCTPSYT 72
Query: 108 RDSEHEGHKVCTSCCEGNICN 128
+ T CC+ ++CN
Sbjct: 73 LQGQVSSGTSSTQCCQEDLCN 93
>gi|30794264 glycosylphosphatidylinositol anchored high density
lipoprotein binding protein 1 [Homo sapiens]
Length = 184
Score = 34.3 bits (77), Expect = 0.054
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 24/102 (23%)
Query: 40 TTPYPGG-----FKCFTCEKAADNYECNRWAPDIYCPRETRYCYTQHTMEVTGNSISVTK 94
T PGG +C+TC+ + CN + + T T+ GN+ S
Sbjct: 51 TNRLPGGRSRVLLRCYTCKSLPRDERCN-------LTQNCSHGQTCTTLIAHGNTES--- 100
Query: 95 RCVPLEECLSTGCRDSEH------EGHKVCTSCCEGNICNLP 130
L ST C DS EG +V +CC+ ++CN+P
Sbjct: 101 ---GLLTTHSTWCTDSCQPITKTVEGTQVTMTCCQSSLCNVP 139
>gi|110735433 CD177 molecule [Homo sapiens]
Length = 437
Score = 34.3 bits (77), Expect = 0.054
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 36 LHPSTTPYPGGFKCFTCEKAADNYECNRWAPDIYCPRETRYCYTQHTMEVTGNSIS 91
L P P PG +C TC + C+ +P + CPR +CY + + ++G +S
Sbjct: 312 LPPQAAPVPGDRQCPTCVQPLGT--CSSGSPRMTCPRGATHCYDGY-IHLSGGGLS 364
>gi|93004088 GPI-anchored metastasis-associated protein homolog
[Homo sapiens]
Length = 346
Score = 31.6 bits (70), Expect = 0.35
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 44 PGGFKCFTCEKAADNYECNRWAPDIYCPRETRYCYT---QHTMEVTGNSISVT---KRCV 97
P G +C++C + P + C + + Y + +T +++V+ + CV
Sbjct: 135 PNGVECYSCVGLSREACQGTSPPVVSCYNASDHVYKGCFDGNVTLTAANVTVSLPVRGCV 194
Query: 98 PLEECLSTGCRDSEHEGHKVCTSCCEGNICNLPLPRNET 136
E C G G + SCC+G+ CN L RN+T
Sbjct: 195 QDEFCTRDGVTGP---GFTLSGSCCQGSRCNSDL-RNKT 229
>gi|164698546 LY6/PLAUR domain containing 5 isoform A [Homo sapiens]
Length = 251
Score = 30.4 bits (67), Expect = 0.78
Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 2/105 (1%)
Query: 42 PYPGGFKCFTCEKAADNYECNRWAPDIYCPRETRYCYTQHTMEVTGN-SISVTKRCVPLE 100
P G +C+ C + + + C ++ C+ + GN S+ V R
Sbjct: 128 PTLSGAECYACIGVHQDDCAIGRSRRVQCHQDQTACFQGNGRMTVGNFSVPVYIRTCHRP 187
Query: 101 ECLSTGCRDSEHEGHKVCTSCCEGNICNLPLPRNETDATFATTSP 145
C + G S + SCCEG +CN + ATT P
Sbjct: 188 SCTTEGTT-SPWTAIDLQGSCCEGYLCNRKSMTQPFTSASATTPP 231
>gi|164663808 LY6/PLAUR domain containing 5 isoform B [Homo sapiens]
Length = 208
Score = 30.4 bits (67), Expect = 0.78
Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 2/105 (1%)
Query: 42 PYPGGFKCFTCEKAADNYECNRWAPDIYCPRETRYCYTQHTMEVTGN-SISVTKRCVPLE 100
P G +C+ C + + + C ++ C+ + GN S+ V R
Sbjct: 85 PTLSGAECYACIGVHQDDCAIGRSRRVQCHQDQTACFQGNGRMTVGNFSVPVYIRTCHRP 144
Query: 101 ECLSTGCRDSEHEGHKVCTSCCEGNICNLPLPRNETDATFATTSP 145
C + G S + SCCEG +CN + ATT P
Sbjct: 145 SCTTEGTT-SPWTAIDLQGSCCEGYLCNRKSMTQPFTSASATTPP 188
>gi|19424138 sperm acrosomal membrane protein 14 [Homo sapiens]
Length = 124
Score = 30.0 bits (66), Expect = 1.0
Identities = 37/139 (26%), Positives = 52/139 (37%), Gaps = 32/139 (23%)
Query: 7 LAWLLLLSLLADCLKAAQSRDFTVKDIIYLHPSTTPYPGGFKCFTCEKAADNYECNRWAP 66
L WLLLL ++ L P TT G C CE D+ +C P
Sbjct: 3 LCWLLLL-------------------VMALPPGTT---GVKDCVFCE-LTDSMQC----P 35
Query: 67 DIYCP-RETRYCYTQHTMEVTGNSISVTKRCVPLEECLSTGCRDSEHEGHKVCTSCCEGN 125
Y + C+T H + G + K C+ C + + T+CC G
Sbjct: 36 GTYMHCGDDEDCFTGHGV-APGTGPVINKGCLRATSCGLEEPVSYRGVTYSLTTNCCTGR 94
Query: 126 ICNLPLPRNETDATFATTS 144
+CN P ++T ATTS
Sbjct: 95 LCN-RAPSSQT--VGATTS 110
>gi|116734708 activin A receptor, type IIB precursor [Homo sapiens]
Length = 512
Score = 29.3 bits (64), Expect = 1.7
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 96 CVPLEECLSTGCRDSEHEGHKVCTSCCEGNICN 128
C +EC++T E +V CCEGN CN
Sbjct: 84 CYDRQECVAT------EENPQVYFCCCEGNFCN 110
>gi|42516574 tripartite motif-containing 41 isoform 2 [Homo sapiens]
Length = 518
Score = 29.3 bits (64), Expect = 1.7
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 42 PYPGGFKCFTCEKAADNYECNRWAPDIYCPRETRYCYTQHTMEVTGNSISVTKRCVPLEE 101
P P +CFTC + ++ + P++ + H G+ ++ C +E
Sbjct: 173 PPPAPRRCFTCPQCRKSFPRRSFRPNLQLANMVQVIRQMHPTPGRGSRVTDQGICPKHQE 232
Query: 102 CLSTGCRDSEHEGHKVCTSCCE 123
L C E + +C C E
Sbjct: 233 ALKLFC---EVDEEAICVVCRE 251
>gi|42516572 tripartite motif-containing 41 isoform 1 [Homo sapiens]
Length = 630
Score = 29.3 bits (64), Expect = 1.7
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 42 PYPGGFKCFTCEKAADNYECNRWAPDIYCPRETRYCYTQHTMEVTGNSISVTKRCVPLEE 101
P P +CFTC + ++ + P++ + H G+ ++ C +E
Sbjct: 173 PPPAPRRCFTCPQCRKSFPRRSFRPNLQLANMVQVIRQMHPTPGRGSRVTDQGICPKHQE 232
Query: 102 CLSTGCRDSEHEGHKVCTSCCE 123
L C E + +C C E
Sbjct: 233 ALKLFC---EVDEEAICVVCRE 251
>gi|7662018 PHD finger protein 3 [Homo sapiens]
Length = 2039
Score = 28.9 bits (63), Expect = 2.3
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 12/96 (12%)
Query: 70 CPRETRYCYTQH-TMEVTGNSISV-------TKRCVPLEECLSTGCRDSEH---EGHKVC 118
C E C Q ++V NS SV ++ PL+E + ++ H G V
Sbjct: 1702 CSAEKNSCVQQSDNLKVAQNSPSVENIQTSQAEQAKPLQEDILMQNIETVHPFRRGSAVA 1761
Query: 119 TSCCE-GNICNLPLPRNETDATFATTSPINQTNGHP 153
TS E GN C P T +TSP TN P
Sbjct: 1762 TSHFEVGNTCPSEFPSKSITFTSRSTSPRTSTNFSP 1797
>gi|116812604 LY6/PLAUR domain containing 1 isoform b [Homo sapiens]
Length = 89
Score = 28.9 bits (63), Expect = 2.3
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 90 ISVTKRCVPLEECL--STGCRDSEHEG--HKVCTSCCEGNICNLPLPRNETDATFATTSP 145
I K C CL S G + G + VC SCC +CN P P+ + A
Sbjct: 13 IMYRKSCASSAACLIASAGYQSFCSPGKLNSVCISCCNTPLCNGPRPKKRGSSASALRPG 72
Query: 146 INQT 149
+ T
Sbjct: 73 LRTT 76
>gi|31542331 cysteine-rich, angiogenic inducer, 61 [Homo sapiens]
Length = 381
Score = 28.5 bits (62), Expect = 3.0
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 66 PDIYCPRETRYCYTQHTMEVTGNSISVTKRCVPLEECLS------TGCRDSEHEGHKVCT 119
P+ +ETR C + + +S+ K+C ++ GC + K C
Sbjct: 256 PECRLVKETRICEVRPCGQPVYSSLKKGKKCSKTKKSPEPVRFTYAGCLSVKKYRPKYCG 315
Query: 120 SCCEGNICNLPLPR 133
SC +G C L R
Sbjct: 316 SCVDGRCCTPQLTR 329
>gi|4501897 activin A receptor, type IIA precursor [Homo sapiens]
Length = 513
Score = 28.5 bits (62), Expect = 3.0
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 75 RYCYTQHTMEVTGNSISVTKRCVPLEE--CLS-TGCRDSEHEGHKVCTSCCEGNICNLPL 131
R+C+ T + SI + K+ L++ C T C + + + +V CCEGN+CN
Sbjct: 58 RHCFA--TWKNISGSIEIVKQGCWLDDINCYDRTDCVEKK-DSPEVYFCCCEGNMCNEKF 114
Query: 132 PR-NETDATFATTSPI 146
E + T T++P+
Sbjct: 115 SYFPEMEVTQPTSNPV 130
>gi|24041035 notch 2 preproprotein [Homo sapiens]
Length = 2471
Score = 28.1 bits (61), Expect = 3.9
Identities = 31/143 (21%), Positives = 47/143 (32%), Gaps = 32/143 (22%)
Query: 52 CEKAADNYEC--NRWAPDIYCPRETRYCYTQHTMEVTGNSISVTK----RCVP------- 98
C+ D+Y C N C + CY+ + G I + C P
Sbjct: 584 CQDGIDSYTCICNPGYMGAICSDQIDECYSSPCLN-DGRCIDLVNGYQCNCQPGTSGVNC 642
Query: 99 ---LEECLSTGC-----RDSEHEGHKVCTSCCEGNICNLPLPRNETDATFATTSPINQTN 150
++C S C D + VC+ G CN+ + ++ + IN N
Sbjct: 643 EINFDDCASNPCIHGICMDGINRYSCVCSPGFTGQRCNIDIDECASNPCRKGATCINGVN 702
Query: 151 G----------HPRCMSVIVSCL 163
G HP C S + CL
Sbjct: 703 GFRCICPEGPHHPSCYSQVNECL 725
>gi|19743803 fibulin 5 precursor [Homo sapiens]
Length = 448
Score = 28.1 bits (61), Expect = 3.9
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 23/96 (23%)
Query: 35 YLHPSTTPYPGGFKCFTCEKAADNYECNRWAPDIYCPRETRYCYTQHTMEVTGNSISV-- 92
Y +P +TPY G + +A NY P I P R+ Y M+ + + V
Sbjct: 80 YSNPYSTPYSGPYPAAAPPLSAPNY------PTISRPLICRFGY---QMDESNQCVDVDE 130
Query: 93 ----TKRCVPLEECLSTGCRDSEHEGHKVCTSCCEG 124
+ +C P + C++T EG C SC +G
Sbjct: 131 CATDSHQCNPTQICINT-------EGGYTC-SCTDG 158
>gi|27477095 nuclear receptor binding SET domain protein 1 isoform a
[Homo sapiens]
Length = 2427
Score = 28.1 bits (61), Expect = 3.9
Identities = 26/108 (24%), Positives = 37/108 (34%), Gaps = 16/108 (14%)
Query: 28 FTVKDIIYLHPSTTPYPGGFKC-----FTCEKAAD---NYECNRWAPDIYCP---RETRY 76
F ++ + +P T GF+C TC A + R + CP +
Sbjct: 1345 FYHEECVQKYPPTVMQNKGFRCSLHICITCHAANPANVSASKGRLMRCVRCPVAYHANDF 1404
Query: 77 CYTQHTMEVTGNSISVTKRCVPLEECLSTGCRDSEHEGHKVCTSCCEG 124
C + + NSI P GCR+ EH C C EG
Sbjct: 1405 CLAAGSKILASNSIICPNHFTPRR-----GCRNHEHVNVSWCFVCSEG 1447
>gi|19923586 nuclear receptor binding SET domain protein 1 isoform b
[Homo sapiens]
Length = 2696
Score = 28.1 bits (61), Expect = 3.9
Identities = 26/108 (24%), Positives = 37/108 (34%), Gaps = 16/108 (14%)
Query: 28 FTVKDIIYLHPSTTPYPGGFKC-----FTCEKAAD---NYECNRWAPDIYCP---RETRY 76
F ++ + +P T GF+C TC A + R + CP +
Sbjct: 1614 FYHEECVQKYPPTVMQNKGFRCSLHICITCHAANPANVSASKGRLMRCVRCPVAYHANDF 1673
Query: 77 CYTQHTMEVTGNSISVTKRCVPLEECLSTGCRDSEHEGHKVCTSCCEG 124
C + + NSI P GCR+ EH C C EG
Sbjct: 1674 CLAAGSKILASNSIICPNHFTPRR-----GCRNHEHVNVSWCFVCSEG 1716
>gi|194018544 testis expressed 101 isoform 1 [Homo sapiens]
Length = 267
Score = 28.1 bits (61), Expect = 3.9
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 65 APDIYCPRETRYCYTQHTMEVTGNSISVTKRCVPLEECLS-TGCR 108
AP + CP T CY Q +E+TG I + V ++ C + GCR
Sbjct: 170 APSLPCPNGTTRCY-QGKLEITGGGI---ESSVEVKGCTAMIGCR 210
>gi|194097358 testis expressed 101 isoform 2 [Homo sapiens]
Length = 249
Score = 28.1 bits (61), Expect = 3.9
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 65 APDIYCPRETRYCYTQHTMEVTGNSISVTKRCVPLEECLS-TGCR 108
AP + CP T CY Q +E+TG I + V ++ C + GCR
Sbjct: 152 APSLPCPNGTTRCY-QGKLEITGGGI---ESSVEVKGCTAMIGCR 192
>gi|130502162 RAS protein activator like 3 [Homo sapiens]
Length = 1011
Score = 28.1 bits (61), Expect = 3.9
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 11/41 (26%)
Query: 36 LHPSTTPYP--------GGFKCFTCEKAADNYECNRWAPDI 68
LHPS P GG +CF+C AA E +RW D+
Sbjct: 251 LHPSLLGEPHCFQVTWTGGSRCFSCRSAA---ERDRWIEDL 288
>gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens]
Length = 955
Score = 28.1 bits (61), Expect = 3.9
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 46 GFKCFTCEKAADNYECNRWAPDIYCPRETRYCYTQHTMEVTGNSISVTKRCVPLEECLST 105
G C Y C+ C R C +M T I RC ++EC+++
Sbjct: 94 GATCPETHGPCGEYGCDLTCNHGGCQEVARVCPVGFSMTETAVGI----RCTDIDECVTS 149
Query: 106 GCRDSEHEGHKVCTSCCEGNIC 127
C EGH C + G +C
Sbjct: 150 SC-----EGH--CVNTEGGFVC 164
>gi|53759148 retinoblastoma binding protein 5 [Homo sapiens]
Length = 538
Score = 27.7 bits (60), Expect = 5.0
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 113 EGHKVCTSCCEGNICNLPLPRNETDATFATTSPINQTNGHPRCMSVIVSC 162
+GHK+ ++ + + + + D F SPI + HPR + ++ C
Sbjct: 77 DGHKLVSASTDNIVSQWDVLSGDCDQRFRFPSPILKVQYHPRDQNKVLVC 126
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 27.3 bits (59), Expect = 6.6
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 71 PRETRYCY-----TQHTMEVTGNSISVTKRCVPLEECLSTGCRDSEHEGH 115
P E Y Y T EV+G S T+R L + +S G DSE GH
Sbjct: 1950 PEEGGYSYDISEKTTSPPEVSGYSYEKTERSRRLLDDISNGYDDSEDGGH 1999
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.468
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,358,388
Number of Sequences: 37866
Number of extensions: 405848
Number of successful extensions: 937
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 926
Number of HSP's gapped (non-prelim): 39
length of query: 171
length of database: 18,247,518
effective HSP length: 95
effective length of query: 76
effective length of database: 14,650,248
effective search space: 1113418848
effective search space used: 1113418848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.