Guide to the Human Genome
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Name: NCKAP1L Sequence: fasta or formatted (1127aa) NCBI GI: 34485727
Description:

NCK-associated protein 1-like

Referenced in:

Hematopoiesis and Erythrocytes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         76           2
 C cysteine            2.3         26           1
 D aspartate           3.8         43           1
 E glutamate           7.5         85           3
 F phenylalanine       4.9         55           1
 G glycine             3.6         41           1
 H histidine           3.5         40           2
 I isoleucine          6.0         68           3
 K lysine              5.3         60           2
 L leucine            13.8        155           3
 M methionine          2.8         32           1
 N asparagine          4.4         50           3
 P proline             3.6         41           2
 Q glutamine           3.9         44           2
 R arginine            5.0         56           2
 S serine              8.3         93           2
 T threonine           5.0         56           2
 V valine              5.9         66           2
 W tryptophan          0.7          8           1
 Y tyrosine            2.8         32           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NCK-associated protein 1-like 
NCKAP1                0.613   NCK-associated protein 1 isoform 1 
NCKAP1                0.610   NCK-associated protein 1 isoform 2 
KRT2                  0.006   keratin 2 
ZNF638                0.005   zinc finger protein 638 
ZNF638                0.005   zinc finger protein 638 
KRT77                 0.004   keratin 77 
LOC100293032          0.003   PREDICTED: hypothetical protein 
LOC100290618          0.003   PREDICTED: hypothetical protein XP_002347833 
LOC100288505          0.003   PREDICTED: hypothetical protein XP_002343610 
BRD2                  0.003   bromodomain containing 2 
BRD2                  0.003   bromodomain containing 2 
RPS16                 0.003   ribosomal protein S16 
ABL1                  0.003   c-abl oncogene 1, receptor tyrosine kinase isoform a...
ABL1                  0.003   c-abl oncogene 1, receptor tyrosine kinase isoform b...
RNMT                  0.003   RNA (guanine-7-) methyltransferase 
RRP1                  0.003   ribosomal RNA processing 1 homolog 
GPATCH4               0.003   G patch domain containing 4 isoform 2 
GPATCH4               0.003   G patch domain containing 4 isoform 1 
DES                   0.002   desmin 
MNAT1                 0.002   menage a trois 1 (CAK assembly factor) 
SIK2                  0.002   SNF1-like kinase 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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