Guide to the Human Genome
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Name: NCKAP1 Sequence: fasta or formatted (1134aa) NCBI GI: 45545411
Description:

NCK-associated protein 1 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {1128aa} NCK-associated protein 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         75           3
 C cysteine            2.0         23           1
 D aspartate           4.8         54           2
 E glutamate           7.0         79           3
 F phenylalanine       4.5         51           2
 G glycine             2.9         33           1
 H histidine           2.8         32           2
 I isoleucine          5.9         67           2
 K lysine              5.9         67           2
 L leucine            12.2        138           3
 M methionine          4.1         46           2
 N asparagine          4.4         50           3
 P proline             3.4         39           1
 Q glutamine           4.2         48           2
 R arginine            4.7         53           2
 S serine              8.7         99           3
 T threonine           5.2         59           3
 V valine              6.4         73           2
 W tryptophan          0.8          9           1
 Y tyrosine            3.4         39           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NCK-associated protein 1 isoform 2 
NCKAP1                0.991   NCK-associated protein 1 isoform 1 
NCKAP1L               0.608   NCK-associated protein 1-like 
CNTLN                 0.003   centlein isoform 1 
LAMA1                 0.003   laminin, alpha 1 precursor 
PCDHGB6               0.003   protocadherin gamma subfamily B, 6 isoform 1 precurs...
PCDHGB6               0.003   protocadherin gamma subfamily B, 6 isoform 2 precurs...
PEG3                  0.002   paternally expressed 3 isoform 3 
PEG3                  0.002   paternally expressed 3 isoform 1 
PEG3                  0.002   paternally expressed 3 isoform 2 
PEG3                  0.002   paternally expressed 3 isoform 1 
PEG3                  0.002   paternally expressed 3 isoform 1 
ATP8B3                0.002   ATPase, class I, type 8B, member 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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