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Search of human proteins with 34485716
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|34485716 Ras-related protein Rab-23 [Homo sapiens]
(237 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34485714 Ras-related protein Rab-23 [Homo sapiens] 471 e-133
gi|34485716 Ras-related protein Rab-23 [Homo sapiens] 471 e-133
gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens] 141 6e-34
gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens] 137 1e-32
gi|5803135 RAB35, member RAS oncogene family [Homo sapiens] 135 4e-32
gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens] 134 5e-32
gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens] 131 4e-31
gi|21361418 RAB30, member RAS oncogene family [Homo sapiens] 131 6e-31
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens] 128 5e-30
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa... 127 8e-30
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens] 127 8e-30
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens] 127 8e-30
gi|34147513 RAB7, member RAS oncogene family [Homo sapiens] 125 4e-29
gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens] 123 2e-28
gi|31795535 RAB36, member RAS oncogene family [Homo sapiens] 123 2e-28
gi|106507164 RAB12, member RAS oncogene family [Homo sapiens] 122 3e-28
gi|208609962 RAB7, member RAS oncogene family-like 1 isoform 1 [... 122 4e-28
gi|4506375 RAB7, member RAS oncogene family-like 1 isoform 1 [Ho... 122 4e-28
gi|38490537 RAB7B, member RAS oncogene family [Homo sapiens] 122 4e-28
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens] 121 5e-28
gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens] 121 6e-28
gi|96975097 RAB6B, member RAS oncogene family [Homo sapiens] 121 6e-28
gi|19923231 RAB6A, member RAS oncogene family isoform a [Homo sa... 120 8e-28
gi|19923262 RAB5A, member RAS oncogene family [Homo sapiens] 120 8e-28
gi|4506371 RAB5B, member RAS oncogene family [Homo sapiens] 120 8e-28
gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens] 120 1e-27
gi|38679888 RAB6A, member RAS oncogene family isoform b [Homo sa... 119 2e-27
gi|41393614 RAB5C, member RAS oncogene family isoform a [Homo sa... 119 2e-27
gi|41393545 RAB5C, member RAS oncogene family isoform b [Homo sa... 119 2e-27
gi|4758984 Ras-related protein Rab-11A [Homo sapiens] 119 3e-27
>gi|34485714 Ras-related protein Rab-23 [Homo sapiens]
Length = 237
Score = 471 bits (1212), Expect = e-133
Identities = 237/237 (100%), Positives = 237/237 (100%)
Query: 1 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL 60
MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
Sbjct: 1 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL 60
Query: 61 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ 120
MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ
Sbjct: 61 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ 120
Query: 121 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED 180
NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED
Sbjct: 121 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED 180
Query: 181 PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP 237
PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP
Sbjct: 181 PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP 237
>gi|34485716 Ras-related protein Rab-23 [Homo sapiens]
Length = 237
Score = 471 bits (1212), Expect = e-133
Identities = 237/237 (100%), Positives = 237/237 (100%)
Query: 1 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL 60
MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL
Sbjct: 1 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL 60
Query: 61 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ 120
MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ
Sbjct: 61 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQ 120
Query: 121 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED 180
NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED
Sbjct: 121 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED 180
Query: 181 PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP 237
PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP
Sbjct: 181 PELTHSSSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFSSCSIP 237
>gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens]
Length = 227
Score = 141 bits (355), Expect = 6e-34
Identities = 64/188 (34%), Positives = 110/188 (58%), Gaps = 1/188 (0%)
Query: 3 EEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLML 62
+++ + K++++GN +VGK+S + RY FT + T+G+DF + + N++ ++L +
Sbjct: 24 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQI 83
Query: 63 WDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGD-IPTVLVQN 121
WDTAGQE + IT AYYRGA +L++ T+ ESF AV W ++ D +LV N
Sbjct: 84 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGN 143
Query: 122 KIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAEDP 181
K D+ D+ I E + L ++L F+ TS K+++NV + F+ L + K+ + + DP
Sbjct: 144 KCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDP 203
Query: 182 ELTHSSSN 189
+T + N
Sbjct: 204 AITAAKQN 211
>gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 137 bits (344), Expect = 1e-32
Identities = 63/188 (33%), Positives = 110/188 (58%), Gaps = 1/188 (0%)
Query: 3 EEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLML 62
+++ + K++++GN +VGK+S + RY FT + T+G+DF + + +++ V+L +
Sbjct: 16 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQI 75
Query: 63 WDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGD-IPTVLVQN 121
WDTAGQE + IT AYYRGA +L++ T+ ESF AV W ++ D +LV N
Sbjct: 76 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGN 135
Query: 122 KIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAEDP 181
K D+ ++ + E+ + LA++L F+ S KE+++V + F+ L + K+ + DP
Sbjct: 136 KCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSLDTDP 195
Query: 182 ELTHSSSN 189
+ SS N
Sbjct: 196 SMLGSSKN 203
>gi|5803135 RAB35, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 135 bits (339), Expect = 4e-32
Identities = 64/181 (35%), Positives = 104/181 (57%)
Query: 2 LEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLM 61
+ D + K++++G+ VGKSS++ R+ F+ Y TIGVDF R +++N E V+L
Sbjct: 1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQ 60
Query: 62 LWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQN 121
+WDTAGQE F IT YYRG ++V+ T ESF V W ++ D+ +LV N
Sbjct: 61 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGN 120
Query: 122 KIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAEDP 181
K D + ++ E+A A ++ ++ + TS KE++NV E+F + E L+ K +A+
Sbjct: 121 KNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQ 180
Query: 182 E 182
+
Sbjct: 181 Q 181
>gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens]
Length = 220
Score = 134 bits (338), Expect = 5e-32
Identities = 64/184 (34%), Positives = 107/184 (58%), Gaps = 2/184 (1%)
Query: 3 EEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLML 62
+++ + K++++GN +VGK+S + RY FT + T+G+DF + I ND+ ++L +
Sbjct: 16 DQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 75
Query: 63 WDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGD-IPTVLVQN 121
WDTAGQE + IT AYYRGA +L++ T+ ESF AV W ++ D +LV N
Sbjct: 76 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 135
Query: 122 KIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQI-AED 180
K D+ D+ + +E LA L F+ S K+++NV + F+ L + +K+ + + D
Sbjct: 136 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTAD 195
Query: 181 PELT 184
P +T
Sbjct: 196 PAVT 199
>gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 131 bits (330), Expect = 4e-31
Identities = 64/189 (33%), Positives = 110/189 (58%), Gaps = 3/189 (1%)
Query: 3 EEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLML 62
+++ + K++++GN +VGK+S + RY FT + T+G+DF + + +D+ ++L +
Sbjct: 16 DQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQI 75
Query: 63 WDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGD-IPTVLVQN 121
WDTAGQE + IT AYYRGA +L++ ++ESF AV W ++ D +LV N
Sbjct: 76 WDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGN 135
Query: 122 KIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAEDP 181
K DL D+ + E+ LA L F+ S KE++NV +VF+ L + +K+ + + +P
Sbjct: 136 KCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNESL--EP 193
Query: 182 ELTHSSSNK 190
+ S+ K
Sbjct: 194 SSSSGSNGK 202
>gi|21361418 RAB30, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 131 bits (329), Expect = 6e-31
Identities = 65/176 (36%), Positives = 106/176 (60%), Gaps = 1/176 (0%)
Query: 1 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL 60
M ED + K+V++GN VGK+ +++R+ +G+F TIGVDF+ + +++N E V+L
Sbjct: 1 MSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKL 60
Query: 61 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGD-IPTVLV 119
+WDTAGQE F +IT++YYR A A +L + T ESF + W ++ + + TVLV
Sbjct: 61 QIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLV 120
Query: 120 QNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQ 175
NKIDL + + + AE ++ + + TS KE NV ++F LA + + + +Q
Sbjct: 121 GNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQ 176
>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 128 bits (321), Expect = 5e-30
Identities = 61/163 (37%), Positives = 97/163 (59%), Gaps = 1/163 (0%)
Query: 11 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 70
K++++G+ VGK+ +I R+ + F Y TIG+DF R + + + ++L +WDTAGQE
Sbjct: 10 KLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQER 69
Query: 71 FDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEV-GDIPTVLVQNKIDLLDDS 129
F IT AYYRGA +LV+ TD +SFE + +W + + + +L+ NK D+
Sbjct: 70 FKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKR 129
Query: 130 CIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQK 172
++ E+A+ LA+ +RF+ TS K +NV+E F LA L K
Sbjct: 130 KVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLK 172
>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
family [Homo sapiens]
Length = 327
Score = 127 bits (319), Expect = 8e-30
Identities = 60/163 (36%), Positives = 97/163 (59%), Gaps = 1/163 (0%)
Query: 11 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 70
K++++G+ VGK+ +I R+ + F Y TIG+DF R + + + ++L +WDTAGQE
Sbjct: 134 KLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQER 193
Query: 71 FDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEV-GDIPTVLVQNKIDLLDDS 129
F IT AYYRGA +L + TD +SFE + +W + ++ + +L+ NK D+
Sbjct: 194 FKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNKCDMEAKR 253
Query: 130 CIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQK 172
++ E+A+ LA+ +RF+ TS K +NV+E F LA L K
Sbjct: 254 KVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLK 296
>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 127 bits (319), Expect = 8e-30
Identities = 60/163 (36%), Positives = 97/163 (59%), Gaps = 1/163 (0%)
Query: 11 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 70
K++++G+ VGK+ +I R+ + F Y TIG+DF R + + + ++L +WDTAGQE
Sbjct: 134 KLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQER 193
Query: 71 FDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEV-GDIPTVLVQNKIDLLDDS 129
F IT AYYRGA +L + TD +SFE + +W + ++ + +L+ NK D+
Sbjct: 194 FKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNKCDMEAKR 253
Query: 130 CIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQK 172
++ E+A+ LA+ +RF+ TS K +NV+E F LA L K
Sbjct: 254 KVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLK 296
>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 127 bits (319), Expect = 8e-30
Identities = 60/163 (36%), Positives = 97/163 (59%), Gaps = 1/163 (0%)
Query: 11 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 70
K++++G+ VGK+ +I R+ + F Y TIG+DF R + + + ++L +WDTAGQE
Sbjct: 134 KLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQER 193
Query: 71 FDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEV-GDIPTVLVQNKIDLLDDS 129
F IT AYYRGA +L + TD +SFE + +W + ++ + +L+ NK D+
Sbjct: 194 FKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNKCDMEAKR 253
Query: 130 CIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQK 172
++ E+A+ LA+ +RF+ TS K +NV+E F LA L K
Sbjct: 254 KVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLK 296
>gi|34147513 RAB7, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 125 bits (313), Expect = 4e-29
Identities = 61/172 (35%), Positives = 107/172 (62%), Gaps = 7/172 (4%)
Query: 7 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTA 66
+V +K++++G+ VGK+S++ +Y F+ YK TIG DFL +++ V+D V + +WDTA
Sbjct: 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTA 65
Query: 67 GQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVG-----DIPTVLVQN 121
GQE F ++ A+YRGA CVLVF T +F+ + SWR++ + + + P V++ N
Sbjct: 66 GQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN 125
Query: 122 KIDLLDDSCIKNEEAEALA-KRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQK 172
KID L++ + + A+A + + ++ TS KE +NV + F+ +A L++
Sbjct: 126 KID-LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 176
>gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 123 bits (308), Expect = 2e-28
Identities = 68/191 (35%), Positives = 107/191 (56%), Gaps = 2/191 (1%)
Query: 3 EEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLML 62
+++ + K+V++G+ VGKS+++ R+ + F + K TIGV+F R IQV+ + ++ +
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 63 WDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEV-GDIPTVLVQN 121
WDTAGQE + AIT AYYRGA +LV+ ++E V W +++ +I +LV N
Sbjct: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
Query: 122 KIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFK-YLAEKYLQKLKQQIAED 180
K DL + +EA A A++ L F TS + NV E FK L E Y ++QIA+
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADR 184
Query: 181 PELTHSSSNKI 191
S N +
Sbjct: 185 AAHDESPGNNV 195
>gi|31795535 RAB36, member RAS oncogene family [Homo sapiens]
Length = 333
Score = 123 bits (308), Expect = 2e-28
Identities = 76/226 (33%), Positives = 114/226 (50%), Gaps = 25/226 (11%)
Query: 11 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 70
K+VVVG+ VGK+S+I R+CK +F +DYK TIGVDF + ++ L +WDTAGQE+
Sbjct: 125 KVVVVGDLYVGKTSLIHRFCKNVFDRDYKATIGVDFEIERFEIAGIPYSLQIWDTAGQEK 184
Query: 71 FDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVA--EVGDIPTVLVQNKIDLLDD 128
F I AYYRGAQ + F TD ++ E W E + E G LV K DLL
Sbjct: 185 FKCIASAYYRGAQVIITAFDLTDVQTLEHTRQWLEDALRENEAGSCFIFLVGTKKDLLSG 244
Query: 129 SCIKNEEAEA--LAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAEDPELTHS 186
+ + EA+A LA+ ++ ++ S K NV F +A +Q + +D E S
Sbjct: 245 AACEQAEADAVHLAREMQAEYWSVSAKTGENVKAFFSRVA---ALAFEQSVLQDLERQSS 301
Query: 187 SSNKIGVFNTSGGSHSGQNSGTLNGGDVINLRPNKQRTKKNRNPFS 232
+ ++G GD+I + + T++++ P S
Sbjct: 302 ARLQVG------------------NGDLIQMEGSPPETQESKRPSS 329
>gi|106507164 RAB12, member RAS oncogene family [Homo sapiens]
Length = 244
Score = 122 bits (306), Expect = 3e-28
Identities = 63/181 (34%), Positives = 113/181 (62%), Gaps = 7/181 (3%)
Query: 10 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 69
++++++G+ VGK+S+++R+ F + K T+GVDF + +++ + +RL +WDTAGQE
Sbjct: 43 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 102
Query: 70 EFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWR---EKVVAEVGDIPTVLVQNKIDLL 126
F++IT AYYR A+ +LV+ T +E+F+ + W +K +E D +LV NK+D
Sbjct: 103 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE--DAELLLVGNKLDCE 160
Query: 127 DDSCIKNEEAEALAKRLK-LRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAEDPELTH 185
D I ++ E A+++ +RF S K++ NV+E+F L + L+K+ I + EL++
Sbjct: 161 TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRN-ELSN 219
Query: 186 S 186
S
Sbjct: 220 S 220
>gi|208609962 RAB7, member RAS oncogene family-like 1 isoform 1
[Homo sapiens]
Length = 203
Score = 122 bits (305), Expect = 4e-28
Identities = 68/174 (39%), Positives = 106/174 (60%), Gaps = 8/174 (4%)
Query: 11 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVND-EDVRLMLWDTAGQE 69
K++VVG+ AVGK+S++QRY + F+K YK T+GVDF + +Q +D E VRL LWD AGQE
Sbjct: 9 KVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGQE 68
Query: 70 EFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWRE----KVVAEVGD-IPTVLVQNKID 124
F ++T+ YYR A ACV++F T+ +F W++ K+ G+ +P +L+ NK D
Sbjct: 69 RFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLANKCD 128
Query: 125 LLDDSCIKNEEAEALAKRLKLR-FYRTSVKEDLNVNEVFKYLAEKYLQKLKQQI 177
L + ++ + +K + TSVKE+ N+NE + L EK ++ + I
Sbjct: 129 -LSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTEDI 181
>gi|4506375 RAB7, member RAS oncogene family-like 1 isoform 1 [Homo
sapiens]
Length = 203
Score = 122 bits (305), Expect = 4e-28
Identities = 68/174 (39%), Positives = 106/174 (60%), Gaps = 8/174 (4%)
Query: 11 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVND-EDVRLMLWDTAGQE 69
K++VVG+ AVGK+S++QRY + F+K YK T+GVDF + +Q +D E VRL LWD AGQE
Sbjct: 9 KVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGQE 68
Query: 70 EFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWRE----KVVAEVGD-IPTVLVQNKID 124
F ++T+ YYR A ACV++F T+ +F W++ K+ G+ +P +L+ NK D
Sbjct: 69 RFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLANKCD 128
Query: 125 LLDDSCIKNEEAEALAKRLKLR-FYRTSVKEDLNVNEVFKYLAEKYLQKLKQQI 177
L + ++ + +K + TSVKE+ N+NE + L EK ++ + I
Sbjct: 129 -LSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMRNSTEDI 181
>gi|38490537 RAB7B, member RAS oncogene family [Homo sapiens]
Length = 199
Score = 122 bits (305), Expect = 4e-28
Identities = 66/184 (35%), Positives = 106/184 (57%), Gaps = 7/184 (3%)
Query: 7 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTA 66
+V +K+++VG VGK+S+ +Y F ++Y+ T+G L + I + D ++L +WDT
Sbjct: 6 KVDLKLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTG 65
Query: 67 GQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEV----GDIPTVLVQNK 122
GQE F ++ +Y+G+ C+L F TD ESFEA+ WR V+A++ P VL+ NK
Sbjct: 66 GQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGNK 125
Query: 123 IDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAEDPE 182
IDL D + E A+ + + ++ S K D+NV + F+ LA + L + Q I E+
Sbjct: 126 IDLADRK-VPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLASRALSRY-QSILEN-H 182
Query: 183 LTHS 186
LT S
Sbjct: 183 LTES 186
>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 121 bits (304), Expect = 5e-28
Identities = 63/199 (31%), Positives = 106/199 (53%), Gaps = 1/199 (0%)
Query: 2 LEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLM 61
+ + + K++++G+ VGKS ++ R+ +T+ Y TIGVDF R I+++ + ++L
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
Query: 62 LWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGD-IPTVLVQ 120
+WDTAGQE F IT +YYRGA ++V+ TD+ES+ V W +++ + + +LV
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
Query: 121 NKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED 180
NK DL + N A+ A L + F TS K NV + F +A + +++ A
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASG 180
Query: 181 PELTHSSSNKIGVFNTSGG 199
E + + V GG
Sbjct: 181 GERPNLKIDSTPVKPAGGG 199
>gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 121 bits (303), Expect = 6e-28
Identities = 63/196 (32%), Positives = 106/196 (54%), Gaps = 9/196 (4%)
Query: 11 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 70
K++++G+ VGK+ ++ R+ + F + TIG+DF R I+++ + ++L +WDTAGQE
Sbjct: 10 KLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER 69
Query: 71 FDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEV-GDIPTVLVQNKIDLLDDS 129
F IT AYYRGA +LV+ T+ +SF+ + +W + D+ +++ NK D+ D
Sbjct: 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKR 129
Query: 130 CIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAED--------P 181
+ E E LA ++F TS K NV E F LA + KL +++ +
Sbjct: 130 QVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNSAGAGGPV 189
Query: 182 ELTHSSSNKIGVFNTS 197
++T + S K F S
Sbjct: 190 KITENRSKKTSFFRCS 205
>gi|96975097 RAB6B, member RAS oncogene family [Homo sapiens]
Length = 208
Score = 121 bits (303), Expect = 6e-28
Identities = 65/157 (41%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Query: 11 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 70
K+V +G +VGK+S+I R+ F Y+ TIG+DFL + + + D VRL LWDTAGQE
Sbjct: 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 74
Query: 71 FDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVG-DIPTVLVQNKIDLLDDS 129
F ++ +Y R + V+V+ T+ SF+ S W + V E G D+ +LV NK DL D
Sbjct: 75 FRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKR 134
Query: 130 CIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLA 166
I EE E AK L + F TS K NV ++F+ +A
Sbjct: 135 QITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVA 171
>gi|19923231 RAB6A, member RAS oncogene family isoform a [Homo
sapiens]
Length = 208
Score = 120 bits (302), Expect = 8e-28
Identities = 63/157 (40%), Positives = 93/157 (59%), Gaps = 1/157 (0%)
Query: 11 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 70
K+V +G +VGK+S+I R+ F Y+ TIG+DFL + + + D +RL LWDTAGQE
Sbjct: 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 74
Query: 71 FDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVG-DIPTVLVQNKIDLLDDS 129
F ++ +Y R + A V+V+ T+ SF+ + W + V E G D+ +LV NK DL D
Sbjct: 75 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 134
Query: 130 CIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLA 166
+ EE E AK L + F TS K NV ++F+ +A
Sbjct: 135 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 171
>gi|19923262 RAB5A, member RAS oncogene family [Homo sapiens]
Length = 215
Score = 120 bits (302), Expect = 8e-28
Identities = 61/159 (38%), Positives = 97/159 (61%), Gaps = 1/159 (0%)
Query: 11 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 70
K+V++G AVGKSS++ R+ KG F + + TIG FL + + ++D V+ +WDTAGQE
Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 81
Query: 71 FDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVG-DIPTVLVQNKIDLLDDS 129
+ ++ YYRGAQA ++V+ T+ ESF +W +++ + +I L NK DL +
Sbjct: 82 YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR 141
Query: 130 CIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEK 168
+ +EA++ A L F TS K +NVNE+F +A+K
Sbjct: 142 AVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 180
>gi|4506371 RAB5B, member RAS oncogene family [Homo sapiens]
Length = 215
Score = 120 bits (302), Expect = 8e-28
Identities = 61/159 (38%), Positives = 98/159 (61%), Gaps = 1/159 (0%)
Query: 11 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 70
K+V++G AVGKSS++ R+ KG F + + TIG FL + + ++D V+ +WDTAGQE
Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 81
Query: 71 FDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVG-DIPTVLVQNKIDLLDDS 129
+ ++ YYRGAQA ++V+ T++E+F +W +++ + I L NK DL +
Sbjct: 82 YHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKR 141
Query: 130 CIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEK 168
++ EEA+A A L F TS K +NVN++F +A+K
Sbjct: 142 MVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKK 180
>gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens]
Length = 200
Score = 120 bits (301), Expect = 1e-27
Identities = 58/187 (31%), Positives = 110/187 (58%), Gaps = 3/187 (1%)
Query: 1 MLEEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL 60
M ++ ++ K++++G+ VGK+ ++ R+ F + TIG+DF + +++ + ++L
Sbjct: 1 MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKL 60
Query: 61 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVG-DIPTVLV 119
+WDTAGQE F IT +YYRGA +LV+ T+ +SFE +S W + D+ +L+
Sbjct: 61 QIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLL 120
Query: 120 QNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQK--LKQQI 177
NK D+ D + + +A+ +RF+ TS K ++N+ + F LAE L+K +K+
Sbjct: 121 GNKCDMDDKRVVPKGKGGQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPN 180
Query: 178 AEDPELT 184
+E+ +++
Sbjct: 181 SENVDIS 187
>gi|38679888 RAB6A, member RAS oncogene family isoform b [Homo
sapiens]
Length = 208
Score = 119 bits (299), Expect = 2e-27
Identities = 63/157 (40%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Query: 11 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 70
K+V +G +VGK+S+I R+ F Y+ TIG+DFL + + + D VRL LWDTAGQE
Sbjct: 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 74
Query: 71 FDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVG-DIPTVLVQNKIDLLDDS 129
F ++ +Y R + V+V+ T+ SF+ + W + V E G D+ +LV NK DL D
Sbjct: 75 FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 134
Query: 130 CIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLA 166
+ EE E AK L + F TS K NV ++F+ +A
Sbjct: 135 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 171
>gi|41393614 RAB5C, member RAS oncogene family isoform a [Homo
sapiens]
Length = 216
Score = 119 bits (299), Expect = 2e-27
Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 1/159 (0%)
Query: 11 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 70
K+V++G AVGKSS++ R+ KG F + + TIG FL + + ++D V+ +WDTAGQE
Sbjct: 23 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 82
Query: 71 FDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVG-DIPTVLVQNKIDLLDDS 129
+ ++ YYRGAQA ++V+ T+ ++F +W +++ + +I L NK DL
Sbjct: 83 YHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKR 142
Query: 130 CIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEK 168
++ +EA+A A L F TS K +NVNE+F +A+K
Sbjct: 143 AVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK 181
>gi|41393545 RAB5C, member RAS oncogene family isoform b [Homo
sapiens]
Length = 216
Score = 119 bits (299), Expect = 2e-27
Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 1/159 (0%)
Query: 11 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 70
K+V++G AVGKSS++ R+ KG F + + TIG FL + + ++D V+ +WDTAGQE
Sbjct: 23 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 82
Query: 71 FDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVG-DIPTVLVQNKIDLLDDS 129
+ ++ YYRGAQA ++V+ T+ ++F +W +++ + +I L NK DL
Sbjct: 83 YHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKR 142
Query: 130 CIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEK 168
++ +EA+A A L F TS K +NVNE+F +A+K
Sbjct: 143 AVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK 181
>gi|4758984 Ras-related protein Rab-11A [Homo sapiens]
Length = 216
Score = 119 bits (297), Expect = 3e-27
Identities = 66/191 (34%), Positives = 108/191 (56%), Gaps = 2/191 (1%)
Query: 3 EEDMEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLML 62
+++ + K+V++G+ VGKS+++ R+ + F + K TIGV+F R IQV+ + ++ +
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 63 WDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEV-GDIPTVLVQN 121
WDTAGQE + AIT AYYRGA +LV+ ++E V W +++ +I +LV N
Sbjct: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
Query: 122 KIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFK-YLAEKYLQKLKQQIAED 180
K DL + +EA A A++ L F TS + NV F+ L E Y ++Q+++
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDR 184
Query: 181 PELTHSSSNKI 191
E S SN +
Sbjct: 185 RENDMSPSNNV 195
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,017,211
Number of Sequences: 37866
Number of extensions: 313473
Number of successful extensions: 1465
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1058
Number of HSP's gapped (non-prelim): 248
length of query: 237
length of database: 18,247,518
effective HSP length: 99
effective length of query: 138
effective length of database: 14,498,784
effective search space: 2000832192
effective search space used: 2000832192
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.