Guide to the Human Genome
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Name: KIAA1143 Sequence: fasta or formatted (154aa) NCBI GI: 33468965
Description:

hypothetical protein LOC57456

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8          9           2
 C cysteine            0.0          0           0
 D aspartate           8.4         13           1
 E glutamate          11.7         18           2
 F phenylalanine       1.9          3           1
 G glycine             3.9          6           1
 H histidine           1.3          2           1
 I isoleucine          3.9          6           2
 K lysine             13.6         21           4
 L leucine             3.9          6           2
 M methionine          1.3          2           1
 N asparagine          4.5          7           1
 P proline             7.8         12           2
 Q glutamine           5.2          8           1
 R arginine            5.2          8           1
 S serine              8.4         13           2
 T threonine           2.6          4           1
 V valine              7.8         12           3
 W tryptophan          0.0          0           0
 Y tyrosine            2.6          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC57456 
CYLC1                 0.046   cylicin, basic protein of sperm head cytoskeleton 1...
CHD6                  0.042   chromodomain helicase DNA binding protein 6 
PCLO                  0.035   piccolo isoform 2 
PCLO                  0.035   piccolo isoform 1 
FAM133B               0.035   hypothetical protein LOC257415 isoform 1 
PRPF4B                0.035   serine/threonine-protein kinase PRP4K 
MAP1B                 0.032   microtubule-associated protein 1B 
WDR44                 0.028   WD repeat domain 44 protein 
EPB41L1               0.028   erythrocyte membrane protein band 4.1-like 1 isoform...
EPB41L1               0.028   erythrocyte membrane protein band 4.1-like 1 isoform...
EIF2S2                0.028   eukaryotic translation initiation factor 2 beta [Hom...
BAT2D1                0.028   HBxAg transactivated protein 2 
LEO1                  0.028   Leo1, Paf1/RNA polymerase II complex component, homo...
MAP2                  0.028   microtubule-associated protein 2 isoform 1 
HNRNPCL1              0.028   heterogeneous nuclear ribonucleoprotein C-like 1 [Ho...
CANX                  0.025   calnexin precursor 
CANX                  0.025   calnexin precursor 
NKAP                  0.025   NFKB activating protein 
NEFH                  0.025   neurofilament, heavy polypeptide 200kDa 
RALBP1                0.021   ralA binding protein 1 
FAM133B               0.021   hypothetical protein LOC257415 isoform 2 
SDCCAG10              0.021   serologically defined colon cancer antigen 10 
FAM133A               0.021   hypothetical protein LOC286499 
HSP90AA1              0.018   heat shock 90kDa protein 1, alpha isoform 2 
HSP90AA1              0.018   heat shock 90kDa protein 1, alpha isoform 1 
EIF3CL                0.018   eukaryotic translation initiation factor 3, subunit...
AFF1                  0.018   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
DACH1                 0.018   dachshund homolog 1 isoform a 
CYLC2                 0.018   cylicin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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