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Search of human proteins with 33359217
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33359217 ALS2 C-terminal like isoform 3 [Homo sapiens]
(300 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33359217 ALS2 C-terminal like isoform 3 [Homo sapiens] 603 e-173
gi|33359215 ALS2 C-terminal like isoform 1 [Homo sapiens] 603 e-173
gi|40316935 alsin isoform 1 [Homo sapiens] 188 6e-48
gi|40353729 Ras and Rab interactor 3 [Homo sapiens] 41 0.001
gi|18466802 Ras and Rab interactor 2 [Homo sapiens] 37 0.016
gi|108860690 chromosome 16 open reading frame 7 [Homo sapiens] 34 0.18
gi|116063534 ankyrin repeat domain 27 (VPS9 domain) [Homo sapiens] 31 1.2
gi|28372497 ubiquitin protein ligase E3 component n-recognin 1 [... 31 1.5
gi|239756399 PREDICTED: similar to hCG32587 [Homo sapiens] 30 2.0
gi|239750926 PREDICTED: similar to hCG32587 [Homo sapiens] 30 2.6
gi|239745324 PREDICTED: similar to hCG32587 [Homo sapiens] 30 2.6
gi|14150035 pleckstrin and Sec7 domain containing 2 [Homo sapiens] 29 4.4
gi|7657496 RAB guanine nucleotide exchange factor (GEF) 1 [Homo ... 29 4.4
gi|170014684 IQ motif containing B1 isoform a [Homo sapiens] 29 5.8
gi|170014680 IQ motif containing B1 isoform c [Homo sapiens] 29 5.8
gi|82659109 retinoblastoma-associated factor 600 [Homo sapiens] 29 5.8
gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens] 28 7.6
gi|47132529 suppression of tumorigenicity 5 isoform 1 [Homo sapi... 28 7.6
gi|47132532 suppression of tumorigenicity 5 isoform 1 [Homo sapi... 28 7.6
gi|21264614 suppression of tumorigenicity 5 isoform 2 [Homo sapi... 28 7.6
>gi|33359217 ALS2 C-terminal like isoform 3 [Homo sapiens]
Length = 300
Score = 603 bits (1556), Expect = e-173
Identities = 300/300 (100%), Positives = 300/300 (100%)
Query: 1 MEDILEELLQHREPKALQLYLRKALSNSLHPLGKLLRTLMLTFQATYAGVGANKHLQELA 60
MEDILEELLQHREPKALQLYLRKALSNSLHPLGKLLRTLMLTFQATYAGVGANKHLQELA
Sbjct: 1 MEDILEELLQHREPKALQLYLRKALSNSLHPLGKLLRTLMLTFQATYAGVGANKHLQELA 60
Query: 61 QEEVKQHAQELWAAYRGLLRVALERKGQALEEDEDTETRDLQVHGLVLPLMLPSFYSELF 120
QEEVKQHAQELWAAYRGLLRVALERKGQALEEDEDTETRDLQVHGLVLPLMLPSFYSELF
Sbjct: 61 QEEVKQHAQELWAAYRGLLRVALERKGQALEEDEDTETRDLQVHGLVLPLMLPSFYSELF 120
Query: 121 TLYLLLHEREDSFYSQGIANLSLFPDTQLLEFLDVQKHLWPLKDLTLTSNQRYSLVRDKC 180
TLYLLLHEREDSFYSQGIANLSLFPDTQLLEFLDVQKHLWPLKDLTLTSNQRYSLVRDKC
Sbjct: 121 TLYLLLHEREDSFYSQGIANLSLFPDTQLLEFLDVQKHLWPLKDLTLTSNQRYSLVRDKC 180
Query: 181 FLSATECLQKIMTTVDPREKLEVLERTYGEIEGTVSRVLGREYKLPMDDLLPLLIYVVSR 240
FLSATECLQKIMTTVDPREKLEVLERTYGEIEGTVSRVLGREYKLPMDDLLPLLIYVVSR
Sbjct: 181 FLSATECLQKIMTTVDPREKLEVLERTYGEIEGTVSRVLGREYKLPMDDLLPLLIYVVSR 240
Query: 241 ARIQHLGAEIHLIRDMMDPNHTGGLYDFLLTALESCYEHIQKEDMRLHRLPGHWHSRELW 300
ARIQHLGAEIHLIRDMMDPNHTGGLYDFLLTALESCYEHIQKEDMRLHRLPGHWHSRELW
Sbjct: 241 ARIQHLGAEIHLIRDMMDPNHTGGLYDFLLTALESCYEHIQKEDMRLHRLPGHWHSRELW 300
>gi|33359215 ALS2 C-terminal like isoform 1 [Homo sapiens]
Length = 953
Score = 603 bits (1556), Expect = e-173
Identities = 300/300 (100%), Positives = 300/300 (100%)
Query: 1 MEDILEELLQHREPKALQLYLRKALSNSLHPLGKLLRTLMLTFQATYAGVGANKHLQELA 60
MEDILEELLQHREPKALQLYLRKALSNSLHPLGKLLRTLMLTFQATYAGVGANKHLQELA
Sbjct: 654 MEDILEELLQHREPKALQLYLRKALSNSLHPLGKLLRTLMLTFQATYAGVGANKHLQELA 713
Query: 61 QEEVKQHAQELWAAYRGLLRVALERKGQALEEDEDTETRDLQVHGLVLPLMLPSFYSELF 120
QEEVKQHAQELWAAYRGLLRVALERKGQALEEDEDTETRDLQVHGLVLPLMLPSFYSELF
Sbjct: 714 QEEVKQHAQELWAAYRGLLRVALERKGQALEEDEDTETRDLQVHGLVLPLMLPSFYSELF 773
Query: 121 TLYLLLHEREDSFYSQGIANLSLFPDTQLLEFLDVQKHLWPLKDLTLTSNQRYSLVRDKC 180
TLYLLLHEREDSFYSQGIANLSLFPDTQLLEFLDVQKHLWPLKDLTLTSNQRYSLVRDKC
Sbjct: 774 TLYLLLHEREDSFYSQGIANLSLFPDTQLLEFLDVQKHLWPLKDLTLTSNQRYSLVRDKC 833
Query: 181 FLSATECLQKIMTTVDPREKLEVLERTYGEIEGTVSRVLGREYKLPMDDLLPLLIYVVSR 240
FLSATECLQKIMTTVDPREKLEVLERTYGEIEGTVSRVLGREYKLPMDDLLPLLIYVVSR
Sbjct: 834 FLSATECLQKIMTTVDPREKLEVLERTYGEIEGTVSRVLGREYKLPMDDLLPLLIYVVSR 893
Query: 241 ARIQHLGAEIHLIRDMMDPNHTGGLYDFLLTALESCYEHIQKEDMRLHRLPGHWHSRELW 300
ARIQHLGAEIHLIRDMMDPNHTGGLYDFLLTALESCYEHIQKEDMRLHRLPGHWHSRELW
Sbjct: 894 ARIQHLGAEIHLIRDMMDPNHTGGLYDFLLTALESCYEHIQKEDMRLHRLPGHWHSRELW 953
>gi|40316935 alsin isoform 1 [Homo sapiens]
Length = 1657
Score = 188 bits (477), Expect = 6e-48
Identities = 108/289 (37%), Positives = 165/289 (57%), Gaps = 20/289 (6%)
Query: 17 LQLYLRKALSNSLHPLGKLLRTLMLTFQATYAGVGANKHLQELAQEEVKQHAQELWAAYR 76
++ YL KA LHPLG+L+ TL+ ++ TY GVGAN+ L + A +E+K + + ++ R
Sbjct: 1368 IRKYLIKACDTPLHPLGRLVETLVAVYRMTYVGVGANRRLLQEAVKEIKSYLKRIFQLVR 1427
Query: 77 GLLR--------------VALERKGQAL-EEDEDTETRD----LQVHGLVLPLMLPSFYS 117
L + ERK + D +E+ + + GL+LP++LP Y
Sbjct: 1428 FLFPELPEEGSTIPLSAPLPTERKSFCTGKSDSRSESPEPGYVVTSSGLLLPVLLPRLYP 1487
Query: 118 ELFTLYLLLHEREDSFYSQGIANLSLFPDTQLLEFLDVQKHLWPLKDLTLTSNQRY-SLV 176
LF LY L ++RE+ Y + + L+ PD LL FL VQ+ WP L +++
Sbjct: 1488 PLFMLYALDNDREEDIYWECVLRLNKQPDIALLGFLGVQRKFWPATLSILGESKKVLPTT 1547
Query: 177 RDKCFLSATECLQKIMTTVDPREKLEVLERTYGEIEGTVSRVLGREYKLPMDDLLPLLIY 236
+D CF SA ECLQ+I TT P +KL+V+++T+ EI +V L ++ MDDL P+ +Y
Sbjct: 1548 KDACFASAVECLQQISTTFTPSDKLKVIQQTFEEISQSVLASLHEDFLWSMDDLFPVFLY 1607
Query: 237 VVSRARIQHLGAEIHLIRDMMDPNHTGGLYDFLLTALESCYEHIQKEDM 285
VV RARI++LG+E+HLI D+MDP G + T L++CY IQ+E +
Sbjct: 1608 VVLRARIRNLGSEVHLIEDLMDPYLQHGEQGIMFTTLKACYYQIQREKL 1656
>gi|40353729 Ras and Rab interactor 3 [Homo sapiens]
Length = 985
Score = 40.8 bits (94), Expect = 0.001
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 197 PREKLEVLERTYGEIEGTVSRVLGREYK-LPMDDLLPLLIYVVSRARIQHLGAEIHLIRD 255
P +K+ +L +T I +++ LG K DD LP+L+YV++R+ + + + + +
Sbjct: 755 PEKKISILLKTCKLIYDSMA--LGNPGKPYGADDFLPVLMYVLARSNLTEMLLNVEYMME 812
Query: 256 MMDPNHTGGLYDFLLTALESCYEHIQKED 284
+MDP G + LT EHI+ D
Sbjct: 813 LMDPALQLGEGSYYLTTTYGALEHIKSYD 841
>gi|18466802 Ras and Rab interactor 2 [Homo sapiens]
Length = 895
Score = 37.4 bits (85), Expect = 0.016
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 181 FLSATECLQKIMTT---VDPREKLEVLERTYGEIEGTVSRVLGREYKLPMDDLLPLLIYV 237
F+ + K MT P +K+ +L R I + GR Y DD LP+L YV
Sbjct: 648 FVDVEKIKVKFMTMQKMYSPEKKVMLLLRVCKLIYTVMENNSGRMYGA--DDFLPVLTYV 705
Query: 238 VSRARIQHLGAEIHLIRDMMDPNHTGGLYDFLLTA 272
+++ + L EI + +++DP+ G + LT+
Sbjct: 706 IAQCDMLELDTEIEYMMELLDPSLLHGEGGYYLTS 740
>gi|108860690 chromosome 16 open reading frame 7 [Homo sapiens]
Length = 631
Score = 33.9 bits (76), Expect = 0.18
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 228 DDLLPLLIYVVSRARIQHLGAEIHLIRDMMDPNHTGGLYDFLLTALESCYEHIQ 281
DDLLP+L +VV R+ + L +E + + + + G + LT+L+S +++
Sbjct: 569 DDLLPILSFVVLRSGLPQLVSECAALEEFIHEGYLIGEEGYCLTSLQSALSYVE 622
>gi|116063534 ankyrin repeat domain 27 (VPS9 domain) [Homo sapiens]
Length = 1050
Score = 31.2 bits (69), Expect = 1.2
Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 188 LQKIMTTVDPREKLEVLERTYGEIEGTVSRVLGREYKLPMDDLLPLLIYVVSRARIQHLG 247
L ++ P++KL L + I + S+ + E + DDLL +L+Y++ + I +
Sbjct: 271 LAQLNKCTSPQQKLVCLRKVVQLITQSPSQRVNLE-TMCADDLLSVLLYLLVKTEIPNWM 329
Query: 248 AEIHLIRDMMDPNHTGGLYDFLLTALESCYEHIQK 282
A + I++ + + LT+ E+ E+I++
Sbjct: 330 ANLSYIKNFRFSSLAKDELGYCLTSFEAAIEYIRQ 364
>gi|28372497 ubiquitin protein ligase E3 component n-recognin 1
[Homo sapiens]
Length = 1749
Score = 30.8 bits (68), Expect = 1.5
Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 15/223 (6%)
Query: 36 LRTLMLTFQATYAGVGANKHLQELAQEEVKQHAQELWAAYRGLLRVALERKGQALEEDED 95
L+ ++L FQ A ++ L +A +E + ++ + ++ G +LE
Sbjct: 542 LKNILLMFQEWCA---CDEELLLVAYKECHKAVMRCSTSFISSSKTVVQSCGHSLETKSY 598
Query: 96 TETRDLQVHGLVLPLMLPSFYSELFTLYLL--LHEREDSFYSQGIANLSLFPDTQLLEFL 153
+ DL L L L + L L + LHE SF + L +P L+
Sbjct: 599 RVSEDLVSIHLPLSRTLAGLHVRLSRLGAVSRLHEFV-SFEDFQVEVLVEYPLRCLVLVA 657
Query: 154 DVQKHLWPLKDLTLTSNQRYSL---VRDKCFLSATECLQKIMTTVDPREKLEVLERTYGE 210
V +W L+L S Y R++ + LQ + +DP + L ++ + Y
Sbjct: 658 QVVAEMWRRNGLSLISQVFYYQDVKCREEMYDKDIIMLQIGASLMDPNKFLLLVLQRYEL 717
Query: 211 IEG------TVSRVLGREYKLPMDDLLPLLIYVVSRARIQHLG 247
E T + L ++Y ++++L +LIY+V + +G
Sbjct: 718 AEAFNKTISTKDQDLIKQYNTLIEEMLQVLIYIVGERYVPGVG 760
>gi|239756399 PREDICTED: similar to hCG32587 [Homo sapiens]
Length = 306
Score = 30.4 bits (67), Expect = 2.0
Identities = 35/148 (23%), Positives = 56/148 (37%), Gaps = 14/148 (9%)
Query: 11 HREPKALQLYLRKALSNSLHPLGKLLRTLMLTFQATYAGVGANKHLQELAQEEVKQHAQE 70
H EP A L + + L + L K L +L QA + HL E +++ E
Sbjct: 110 HLEPPAGPLEVEQQLQAEIKHLRKTLESLAGQLQAQVEANEGSSHLNRQQDERLREWKAE 169
Query: 71 LWAAYRGLLRVALERKGQALEEDEDTETRDL-QVHGLVLPLMLPSFYSELFTLYLLLHER 129
LW E ++++D T + L Q H L L + Y L
Sbjct: 170 LWEEQG-------ETGRSSVQKDRTTISHALSQNHQLEEQLAKVKQMQQQVAAYQQLTSE 222
Query: 130 EDSFYSQGIANLSLFPDTQLLEFLDVQK 157
+++ + Q L TQL++ L Q+
Sbjct: 223 KEALHRQ------LLLQTQLMDQLQQQE 244
>gi|239750926 PREDICTED: similar to hCG32587 [Homo sapiens]
Length = 233
Score = 30.0 bits (66), Expect = 2.6
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 11 HREPKALQLYLRKALSNSLHPLGKLLRTLMLTFQATYAGVGANKHLQELAQEEVKQHAQE 70
H EP A L + + L + L K L +L QA + HL E +++ E
Sbjct: 110 HLEPPAGPLEVEQQLQAEIKHLRKTLESLAGQLQAQVEANEGSSHLNRQQDERLREWKAE 169
Query: 71 LW 72
LW
Sbjct: 170 LW 171
>gi|239745324 PREDICTED: similar to hCG32587 [Homo sapiens]
Length = 233
Score = 30.0 bits (66), Expect = 2.6
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 11 HREPKALQLYLRKALSNSLHPLGKLLRTLMLTFQATYAGVGANKHLQELAQEEVKQHAQE 70
H EP A L + + L + L K L +L QA + HL E +++ E
Sbjct: 110 HLEPPAGPLEVEQQLQAEIKHLRKTLESLAGQLQAQVEANEGSSHLNRQQDERLREWKAE 169
Query: 71 LW 72
LW
Sbjct: 170 LW 171
>gi|14150035 pleckstrin and Sec7 domain containing 2 [Homo sapiens]
Length = 771
Score = 29.3 bits (64), Expect = 4.4
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 84 ERKGQALEEDEDTETRDLQVHGLVLPLMLPSFYSELFTLYLLLHEREDSFYSQGI----- 138
ER+G + +E T+ D+ HGL L L L + + L +L E + G+
Sbjct: 49 ERRGTPADTEEPTKDPDVAFHGLSLGLSLTNGLALGPDLNILEDSAESRPWRAGVLAEGD 108
Query: 139 -ANLSLFPDTQ 148
A+ SL+PD +
Sbjct: 109 NASRSLYPDAE 119
>gi|7657496 RAB guanine nucleotide exchange factor (GEF) 1 [Homo
sapiens]
Length = 491
Score = 29.3 bits (64), Expect = 4.4
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Query: 153 LDVQKHLWPLKDLT-----LTSNQRYSLVRDKCFLSATECLQKIMTTVDPREKLEVLERT 207
L +QK + L+ +T + N+ V D + T+ ++ V PR+KL + +
Sbjct: 236 LAIQKRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRV-PRDKLACITKC 294
Query: 208 YGEIEGTVSRVLGREYKLPMDDLLPLLIYVVSRARIQHLGAEIHLIRDMMDPN 260
I + + + DD LP LIY+V + L + I I +P+
Sbjct: 295 SKHIFNAIK--ITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPS 345
>gi|170014684 IQ motif containing B1 isoform a [Homo sapiens]
Length = 598
Score = 28.9 bits (63), Expect = 5.8
Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 153 LDVQKHLWPLKDLTLTSNQRYSLVRDKCFLSATECLQKIMTTVDPREKL--------EVL 204
L +QKH ++ QR SL+ K ++ K + ++KL E+
Sbjct: 392 LIIQKHWRGYRERKNFHQQRQSLIEYKAAVTLQRAALKFLAKCRKKKKLFAPWRGLQELT 451
Query: 205 ERTYGEIEGTVSRVLGREYKLPMDDLLPLLIYVVSRARIQH 245
+ E++ V + R PM D++ ++ ++ R+QH
Sbjct: 452 DARRVELKKRVDDYVRRHLGSPMSDVVSRELHAQAQERLQH 492
>gi|170014680 IQ motif containing B1 isoform c [Homo sapiens]
Length = 465
Score = 28.9 bits (63), Expect = 5.8
Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 153 LDVQKHLWPLKDLTLTSNQRYSLVRDKCFLSATECLQKIMTTVDPREKL--------EVL 204
L +QKH ++ QR SL+ K ++ K + ++KL E+
Sbjct: 259 LIIQKHWRGYRERKNFHQQRQSLIEYKAAVTLQRAALKFLAKCRKKKKLFAPWRGLQELT 318
Query: 205 ERTYGEIEGTVSRVLGREYKLPMDDLLPLLIYVVSRARIQH 245
+ E++ V + R PM D++ ++ ++ R+QH
Sbjct: 319 DARRVELKKRVDDYVRRHLGSPMSDVVSRELHAQAQERLQH 359
>gi|82659109 retinoblastoma-associated factor 600 [Homo sapiens]
Length = 5183
Score = 28.9 bits (63), Expect = 5.8
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 2 EDILEELLQHREPKALQLYLRKALSNSLHPLGKLLRTLMLTFQATYAGVGANKHLQ 57
E ILEE LQ+ E + RKA+ G+L++ +M T + N+ L+
Sbjct: 1374 ESILEECLQYLEKQLESSQARKAMEEFFSDSGELVQIMMATANENLSAKFCNRVLK 1429
>gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens]
Length = 602
Score = 28.5 bits (62), Expect = 7.6
Identities = 18/68 (26%), Positives = 35/68 (51%)
Query: 4 ILEELLQHREPKALQLYLRKALSNSLHPLGKLLRTLMLTFQATYAGVGANKHLQELAQEE 63
+LEE+ Q R R+ L L + + +++L TF + + +++H Q+L ++
Sbjct: 130 VLEEVQQVRRSHQDFSRQREELGQGLQGVEQKVQSLQATFGTFESILRSSQHKQDLTEKA 189
Query: 64 VKQHAQEL 71
VKQ E+
Sbjct: 190 VKQGESEV 197
>gi|47132529 suppression of tumorigenicity 5 isoform 1 [Homo sapiens]
Length = 1137
Score = 28.5 bits (62), Expect = 7.6
Identities = 22/97 (22%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 44 QATYAGVGANKHLQELAQEEVKQHAQELWAAYRGLLRVALERKGQALEEDEDTETRD--L 101
+A +G+++ ++++ E+ ++L AA L ALERK + + +D D+++ D
Sbjct: 966 EALMVNLGSDRFIRQMDDEDTLL-PRKLQAA----LEQALERKNELISQDSDSDSDDECN 1020
Query: 102 QVHGLVLPLMLPSFYSEL--FTLYLLLHEREDSFYSQ 136
++GLV + + F + ++L+L E+ + + +
Sbjct: 1021 TLNGLVSEVFIRFFVETVGHYSLFLTQSEKGERAFQR 1057
>gi|47132532 suppression of tumorigenicity 5 isoform 1 [Homo sapiens]
Length = 1137
Score = 28.5 bits (62), Expect = 7.6
Identities = 22/97 (22%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 44 QATYAGVGANKHLQELAQEEVKQHAQELWAAYRGLLRVALERKGQALEEDEDTETRD--L 101
+A +G+++ ++++ E+ ++L AA L ALERK + + +D D+++ D
Sbjct: 966 EALMVNLGSDRFIRQMDDEDTLL-PRKLQAA----LEQALERKNELISQDSDSDSDDECN 1020
Query: 102 QVHGLVLPLMLPSFYSEL--FTLYLLLHEREDSFYSQ 136
++GLV + + F + ++L+L E+ + + +
Sbjct: 1021 TLNGLVSEVFIRFFVETVGHYSLFLTQSEKGERAFQR 1057
>gi|21264614 suppression of tumorigenicity 5 isoform 2 [Homo
sapiens]
Length = 717
Score = 28.5 bits (62), Expect = 7.6
Identities = 22/97 (22%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 44 QATYAGVGANKHLQELAQEEVKQHAQELWAAYRGLLRVALERKGQALEEDEDTETRD--L 101
+A +G+++ ++++ E+ ++L AA L ALERK + + +D D+++ D
Sbjct: 546 EALMVNLGSDRFIRQMDDEDTLL-PRKLQAA----LEQALERKNELISQDSDSDSDDECN 600
Query: 102 QVHGLVLPLMLPSFYSEL--FTLYLLLHEREDSFYSQ 136
++GLV + + F + ++L+L E+ + + +
Sbjct: 601 TLNGLVSEVFIRFFVETVGHYSLFLTQSEKGERAFQR 637
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,976,402
Number of Sequences: 37866
Number of extensions: 454445
Number of successful extensions: 1278
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1265
Number of HSP's gapped (non-prelim): 21
length of query: 300
length of database: 18,247,518
effective HSP length: 102
effective length of query: 198
effective length of database: 14,385,186
effective search space: 2848266828
effective search space used: 2848266828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.