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Search of human proteins with 33342268
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33342268 hypothetical protein LOC91300 [Homo sapiens]
(268 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33342268 hypothetical protein LOC91300 [Homo sapiens] 538 e-153
gi|164565408 common-site lymphoma/leukemia guanine nucleotide ex... 40 0.003
gi|14277682 protocadherin gamma subfamily C, 4 isoform 2 precurs... 33 0.34
gi|11128025 protocadherin gamma subfamily C, 4 isoform 1 precurs... 33 0.34
gi|45387958 1A6/DRIM (down-regulated in metastasis) interacting ... 32 0.58
gi|110431370 espin [Homo sapiens] 32 0.76
gi|71043876 undifferentiated embryonic cell transcription factor... 31 1.3
gi|25777684 Ras association domain family 1 isoform D [Homo sapi... 30 2.2
gi|25777682 Ras association domain family 1 isoform C [Homo sapi... 30 2.2
gi|20149588 Ras association domain family 1 isoform A [Homo sapi... 30 2.2
gi|25777680 Ras association domain family 1 isoform B [Homo sapi... 30 2.2
gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens] 30 2.2
gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens] 30 2.2
gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens] 30 2.2
gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens] 30 2.2
gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens] 30 2.2
gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens] 30 2.2
gi|239740980 PREDICTED: hypothetical protein XP_002344293 [Homo ... 30 2.2
gi|218505839 interleukin 11 receptor, alpha isoform 1 precursor ... 30 2.2
gi|22212922 interleukin 11 receptor, alpha isoform 2 precursor [... 30 2.2
gi|4758594 interleukin 11 receptor, alpha isoform 1 precursor [H... 30 2.2
gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1... 30 2.2
gi|65301141 PH domain and leucine rich repeat protein phosphatas... 30 2.9
gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens] 30 2.9
gi|58000465 ripply2 protein [Homo sapiens] 29 3.8
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 29 3.8
gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens] 29 3.8
gi|4504195 general transcription factor IIE, polypeptide 2, beta... 29 4.9
gi|14165383 protocadherin alpha 10 isoform 3 precursor [Homo sap... 29 4.9
gi|14165381 protocadherin alpha 10 isoform 2 precursor [Homo sap... 29 4.9
>gi|33342268 hypothetical protein LOC91300 [Homo sapiens]
Length = 268
Score = 538 bits (1386), Expect = e-153
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 1 MVALENPECGPEAAEGTPGGRRLLPLPSCLPALASSQVKRLSASRRKQHFINQAVRNSDL 60
MVALENPECGPEAAEGTPGGRRLLPLPSCLPALASSQVKRLSASRRKQHFINQAVRNSDL
Sbjct: 1 MVALENPECGPEAAEGTPGGRRLLPLPSCLPALASSQVKRLSASRRKQHFINQAVRNSDL 60
Query: 61 VPKAKGRKSLQRLENTQYLLTLLETDGGLPGLEDGDLAPPASPGIFAEACNNATYVEVWN 120
VPKAKGRKSLQRLENTQYLLTLLETDGGLPGLEDGDLAPPASPGIFAEACNNATYVEVWN
Sbjct: 61 VPKAKGRKSLQRLENTQYLLTLLETDGGLPGLEDGDLAPPASPGIFAEACNNATYVEVWN 120
Query: 121 DFMNRSGEEQERVLRYLEDEGRSKARRRGPGRGEDRRREDPAYTPRECFQRISRRLRAVL 180
DFMNRSGEEQERVLRYLEDEGRSKARRRGPGRGEDRRREDPAYTPRECFQRISRRLRAVL
Sbjct: 121 DFMNRSGEEQERVLRYLEDEGRSKARRRGPGRGEDRRREDPAYTPRECFQRISRRLRAVL 180
Query: 181 KRSRIPMETLETWEERLLRFFSVSPQAVYTAMLDNSFERLLLHAVCQYMDLISASADLEG 240
KRSRIPMETLETWEERLLRFFSVSPQAVYTAMLDNSFERLLLHAVCQYMDLISASADLEG
Sbjct: 181 KRSRIPMETLETWEERLLRFFSVSPQAVYTAMLDNSFERLLLHAVCQYMDLISASADLEG 240
Query: 241 KRQMKVSNRHLDFLPPGLLLSAYLEQHS 268
KRQMKVSNRHLDFLPPGLLLSAYLEQHS
Sbjct: 241 KRQMKVSNRHLDFLPPGLLLSAYLEQHS 268
>gi|164565408 common-site lymphoma/leukemia guanine nucleotide
exchange factor [Homo sapiens]
Length = 1386
Score = 39.7 bits (91), Expect = 0.003
Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 25/137 (18%)
Query: 25 PLPSCLPALASSQVKRLSASRRKQHFINQAVRNSDLVPKAKGRKSLQRLENTQYLLTL-L 83
PLP P+L +QV++L+ S ++ I+ V + +P+ G +Q L T T+ L
Sbjct: 1180 PLPE--PSLTDTQVQKLTPSLEQKSLIDAHVPAATPLPERGGSLDIQGLSPTPVQTTMVL 1237
Query: 84 ETDGG-----LPGLEDGDLAPPASPGIFAEACNNATYVEVWNDFMNRSGEEQERVLRYLE 138
GG + LE DL PP SP + G + RYL
Sbjct: 1238 SKPGGSLASHVARLESSDLTPPHSPPPSSRQL---------------LGPNAAALSRYLA 1282
Query: 139 DE--GRSKARRRGPGRG 153
+S ARR+GPG G
Sbjct: 1283 ASYISQSLARRQGPGGG 1299
>gi|14277682 protocadherin gamma subfamily C, 4 isoform 2 precursor
[Homo sapiens]
Length = 871
Score = 32.7 bits (73), Expect = 0.34
Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 12 EAAEGTPGGRRLLPLPSCLPALASSQVKRLSASRRKQHFINQAVRNSD--LVPKAKGRKS 69
E E P G+R PL A S +HF + SD LVP+ K
Sbjct: 141 EIGEAAPPGQRF-PLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLLEKP 199
Query: 70 LQRLENTQYLLTLLETDGGLP 90
L R + + Y L L DGG P
Sbjct: 200 LDREKQSDYRLVLTAVDGGNP 220
>gi|11128025 protocadherin gamma subfamily C, 4 isoform 1 precursor
[Homo sapiens]
Length = 938
Score = 32.7 bits (73), Expect = 0.34
Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 12 EAAEGTPGGRRLLPLPSCLPALASSQVKRLSASRRKQHFINQAVRNSD--LVPKAKGRKS 69
E E P G+R PL A S +HF + SD LVP+ K
Sbjct: 141 EIGEAAPPGQRF-PLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLLEKP 199
Query: 70 LQRLENTQYLLTLLETDGGLP 90
L R + + Y L L DGG P
Sbjct: 200 LDREKQSDYRLVLTAVDGGNP 220
>gi|45387958 1A6/DRIM (down-regulated in metastasis) interacting
protein [Homo sapiens]
Length = 1209
Score = 32.0 bits (71), Expect = 0.58
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 102 SPGIFAEACNNATYVEVWNDFMNRSGEEQERVLRYLEDEGRSKARRRGPGRGEDRRREDP 161
SPG +A A W+DF ++S VLR EGR R G G D+ E P
Sbjct: 1010 SPGAERDAGAQADRTPPWSDFAHQSRLPSPWVLR---SEGRDAVWRGGVGSERDKGSEGP 1066
Query: 162 A 162
A
Sbjct: 1067 A 1067
>gi|110431370 espin [Homo sapiens]
Length = 854
Score = 31.6 bits (70), Expect = 0.76
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 11 PEAAEGTPGGRRLLPLPSCLPALASSQVKRLSASRRKQHFINQAVRNSDLVPKAKGRKSL 70
PEAA P L PL S P + + S + + ++ NS+L+ + K KSL
Sbjct: 607 PEAASSPPPAPPL-PLESAGPGCGQRRSSSSTGSTKSFNMMSPTGDNSELLAEIKAGKSL 665
Query: 71 QRLENTQYLLTLLETDGGLPGLEDGDLAPPASPGI 105
+ ++ L T+ + G P + P SP +
Sbjct: 666 KPTPQSKGLTTVF-SGIGQPAFQPDSPLPSVSPAL 699
>gi|71043876 undifferentiated embryonic cell transcription factor 1
[Homo sapiens]
Length = 341
Score = 30.8 bits (68), Expect = 1.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 128 EEQERVLRYLEDEGRSKARRRGPGRGEDRRREDP 161
E+ +++ L D GR + RRR PG G +R P
Sbjct: 138 EQIRKLMGLLGDNGRKRPRRRSPGSGRPQRARRP 171
>gi|25777684 Ras association domain family 1 isoform D [Homo
sapiens]
Length = 344
Score = 30.0 bits (66), Expect = 2.2
Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 14/108 (12%)
Query: 147 RRGPGRGEDRRREDPAYTPRECFQRISRRLRAVLKRSRIPMETLETWEERLLRFFSVSPQ 206
RRGPGRG RR Y P++ + + VL R+R E +E LLR F V
Sbjct: 193 RRGPGRGTSVRRRTSFYLPKDAVKHLH-----VLSRTR-AREVIEA----LLRKFLVVDD 242
Query: 207 AVYTAMLDNSFERLLLHAVCQYMDLISASADLEGKRQMKVSNRHLDFL 254
A+ FER H L+ L + S++ L F+
Sbjct: 243 PRKFAL----FERAERHGQVYLRKLLDDEQPLRLRLLAGPSDKALSFV 286
>gi|25777682 Ras association domain family 1 isoform C [Homo
sapiens]
Length = 270
Score = 30.0 bits (66), Expect = 2.2
Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 14/108 (12%)
Query: 147 RRGPGRGEDRRREDPAYTPRECFQRISRRLRAVLKRSRIPMETLETWEERLLRFFSVSPQ 206
RRGPGRG RR Y P++ + + VL R+R E +E LLR F V
Sbjct: 119 RRGPGRGTSVRRRTSFYLPKDAVKHLH-----VLSRTR-AREVIEA----LLRKFLVVDD 168
Query: 207 AVYTAMLDNSFERLLLHAVCQYMDLISASADLEGKRQMKVSNRHLDFL 254
A+ FER H L+ L + S++ L F+
Sbjct: 169 PRKFAL----FERAERHGQVYLRKLLDDEQPLRLRLLAGPSDKALSFV 212
>gi|20149588 Ras association domain family 1 isoform A [Homo
sapiens]
Length = 340
Score = 30.0 bits (66), Expect = 2.2
Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 14/108 (12%)
Query: 147 RRGPGRGEDRRREDPAYTPRECFQRISRRLRAVLKRSRIPMETLETWEERLLRFFSVSPQ 206
RRGPGRG RR Y P++ + + VL R+R E +E LLR F V
Sbjct: 189 RRGPGRGTSVRRRTSFYLPKDAVKHLH-----VLSRTR-AREVIEA----LLRKFLVVDD 238
Query: 207 AVYTAMLDNSFERLLLHAVCQYMDLISASADLEGKRQMKVSNRHLDFL 254
A+ FER H L+ L + S++ L F+
Sbjct: 239 PRKFAL----FERAERHGQVYLRKLLDDEQPLRLRLLAGPSDKALSFV 282
>gi|25777680 Ras association domain family 1 isoform B [Homo
sapiens]
Length = 189
Score = 30.0 bits (66), Expect = 2.2
Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 14/108 (12%)
Query: 147 RRGPGRGEDRRREDPAYTPRECFQRISRRLRAVLKRSRIPMETLETWEERLLRFFSVSPQ 206
RRGPGRG RR Y P++ + + VL R+R E +E LLR F V
Sbjct: 38 RRGPGRGTSVRRRTSFYLPKDAVKHLH-----VLSRTR-AREVIEA----LLRKFLVVDD 87
Query: 207 AVYTAMLDNSFERLLLHAVCQYMDLISASADLEGKRQMKVSNRHLDFL 254
A+ FER H L+ L + S++ L F+
Sbjct: 88 PRKFAL----FERAERHGQVYLRKLLDDEQPLRLRLLAGPSDKALSFV 131
>gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2852
Score = 30.0 bits (66), Expect = 2.2
Identities = 34/118 (28%), Positives = 46/118 (38%), Gaps = 28/118 (23%)
Query: 1 MVALENPECGPEAAEGTPGGRRLLPLPSCLPALASSQVKRLSASRRKQHFINQAVRNSDL 60
+++ E E G G+P + PLPS P R QH A R+ L
Sbjct: 1659 VLSTEKGEAGHSQPMGSPASPQPHPLPSAPP-------------RPAQH-TTMATRSPAL 1704
Query: 61 VPKAKGRKSLQR------------LENTQ--YLLTLLETDGGLPGLEDGDLAPPASPG 104
P+ SL LE+T+ LL+ L D LP + G AP A+PG
Sbjct: 1705 PPETPAAASLSTATDGLAATPFMSLESTRPSQLLSGLPPDTSLPLAKVGTSAPVATPG 1762
>gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2924
Score = 30.0 bits (66), Expect = 2.2
Identities = 34/118 (28%), Positives = 46/118 (38%), Gaps = 28/118 (23%)
Query: 1 MVALENPECGPEAAEGTPGGRRLLPLPSCLPALASSQVKRLSASRRKQHFINQAVRNSDL 60
+++ E E G G+P + PLPS P R QH A R+ L
Sbjct: 1731 VLSTEKGEAGHSQPMGSPASPQPHPLPSAPP-------------RPAQH-TTMATRSPAL 1776
Query: 61 VPKAKGRKSLQR------------LENTQ--YLLTLLETDGGLPGLEDGDLAPPASPG 104
P+ SL LE+T+ LL+ L D LP + G AP A+PG
Sbjct: 1777 PPETPAAASLSTATDGLAATPFMSLESTRPSQLLSGLPPDTSLPLAKVGTSAPVATPG 1834
>gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 30.0 bits (66), Expect = 2.2
Identities = 34/118 (28%), Positives = 46/118 (38%), Gaps = 28/118 (23%)
Query: 1 MVALENPECGPEAAEGTPGGRRLLPLPSCLPALASSQVKRLSASRRKQHFINQAVRNSDL 60
+++ E E G G+P + PLPS P R QH A R+ L
Sbjct: 1659 VLSTEKGEAGHSQPMGSPASPQPHPLPSAPP-------------RPAQH-TTMATRSPAL 1704
Query: 61 VPKAKGRKSLQR------------LENTQ--YLLTLLETDGGLPGLEDGDLAPPASPG 104
P+ SL LE+T+ LL+ L D LP + G AP A+PG
Sbjct: 1705 PPETPAAASLSTATDGLAATPFMSLESTRPSQLLSGLPPDTSLPLAKVGTSAPVATPG 1762
>gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 30.0 bits (66), Expect = 2.2
Identities = 34/118 (28%), Positives = 46/118 (38%), Gaps = 28/118 (23%)
Query: 1 MVALENPECGPEAAEGTPGGRRLLPLPSCLPALASSQVKRLSASRRKQHFINQAVRNSDL 60
+++ E E G G+P + PLPS P R QH A R+ L
Sbjct: 1731 VLSTEKGEAGHSQPMGSPASPQPHPLPSAPP-------------RPAQH-TTMATRSPAL 1776
Query: 61 VPKAKGRKSLQR------------LENTQ--YLLTLLETDGGLPGLEDGDLAPPASPG 104
P+ SL LE+T+ LL+ L D LP + G AP A+PG
Sbjct: 1777 PPETPAAASLSTATDGLAATPFMSLESTRPSQLLSGLPPDTSLPLAKVGTSAPVATPG 1834
>gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 30.0 bits (66), Expect = 2.2
Identities = 34/118 (28%), Positives = 46/118 (38%), Gaps = 28/118 (23%)
Query: 1 MVALENPECGPEAAEGTPGGRRLLPLPSCLPALASSQVKRLSASRRKQHFINQAVRNSDL 60
+++ E E G G+P + PLPS P R QH A R+ L
Sbjct: 1659 VLSTEKGEAGHSQPMGSPASPQPHPLPSAPP-------------RPAQH-TTMATRSPAL 1704
Query: 61 VPKAKGRKSLQR------------LENTQ--YLLTLLETDGGLPGLEDGDLAPPASPG 104
P+ SL LE+T+ LL+ L D LP + G AP A+PG
Sbjct: 1705 PPETPAAASLSTATDGLAATPFMSLESTRPSQLLSGLPPDTSLPLAKVGTSAPVATPG 1762
>gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 30.0 bits (66), Expect = 2.2
Identities = 34/118 (28%), Positives = 46/118 (38%), Gaps = 28/118 (23%)
Query: 1 MVALENPECGPEAAEGTPGGRRLLPLPSCLPALASSQVKRLSASRRKQHFINQAVRNSDL 60
+++ E E G G+P + PLPS P R QH A R+ L
Sbjct: 1731 VLSTEKGEAGHSQPMGSPASPQPHPLPSAPP-------------RPAQH-TTMATRSPAL 1776
Query: 61 VPKAKGRKSLQR------------LENTQ--YLLTLLETDGGLPGLEDGDLAPPASPG 104
P+ SL LE+T+ LL+ L D LP + G AP A+PG
Sbjct: 1777 PPETPAAASLSTATDGLAATPFMSLESTRPSQLLSGLPPDTSLPLAKVGTSAPVATPG 1834
>gi|239740980 PREDICTED: hypothetical protein XP_002344293 [Homo
sapiens]
Length = 616
Score = 30.0 bits (66), Expect = 2.2
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 31 PALASSQVKRLSASRRKQHFINQAVRNSDLVPKAKGRKSLQRLENTQYLLTLLETDGGLP 90
PAL S V L+A Q L+P++ QR +++QY L GG
Sbjct: 455 PALTPSPVGVLTAPHLAQTLDAALAAPPLLLPESHAGGQPQRSQDSQYPLRTWTVCGGSN 514
Query: 91 GLEDGDLAPPASPG 104
G +DG L PA PG
Sbjct: 515 GGQDGYLL-PAVPG 527
>gi|218505839 interleukin 11 receptor, alpha isoform 1 precursor
[Homo sapiens]
Length = 422
Score = 30.0 bits (66), Expect = 2.2
Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 19/137 (13%)
Query: 86 DGGLPGLEDGDLA-PPASPGIFAEACNNATYVEVWNDFMNRSGEEQERVLRYLEDEGRSK 144
DG L G L PPA P + +A + + W+ + RYL
Sbjct: 98 DGALGGTVTLQLGYPPARPVVSCQAADYENFSCTWSP-----SQISGLPTRYLT------ 146
Query: 145 ARRRGPGRGEDRRREDPAYTPRECFQRISRRLRAVLKRSRIPMETLETWEERLLRFFSVS 204
+ R+ G D +R P+ P C Q L +R + E W + + V+
Sbjct: 147 SYRKKTVLGADSQRRSPSTGPWPCPQD-------PLGAARCVVHGAEFWSQYRINVTEVN 199
Query: 205 PQAVYTAMLDNSFERLL 221
P T +LD S + +L
Sbjct: 200 PLGASTRLLDVSLQSIL 216
>gi|22212922 interleukin 11 receptor, alpha isoform 2 precursor
[Homo sapiens]
Length = 390
Score = 30.0 bits (66), Expect = 2.2
Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 19/137 (13%)
Query: 86 DGGLPGLEDGDLA-PPASPGIFAEACNNATYVEVWNDFMNRSGEEQERVLRYLEDEGRSK 144
DG L G L PPA P + +A + + W+ + RYL
Sbjct: 98 DGALGGTVTLQLGYPPARPVVSCQAADYENFSCTWSP-----SQISGLPTRYLT------ 146
Query: 145 ARRRGPGRGEDRRREDPAYTPRECFQRISRRLRAVLKRSRIPMETLETWEERLLRFFSVS 204
+ R+ G D +R P+ P C Q L +R + E W + + V+
Sbjct: 147 SYRKKTVLGADSQRRSPSTGPWPCPQD-------PLGAARCVVHGAEFWSQYRINVTEVN 199
Query: 205 PQAVYTAMLDNSFERLL 221
P T +LD S + +L
Sbjct: 200 PLGASTRLLDVSLQSIL 216
>gi|4758594 interleukin 11 receptor, alpha isoform 1 precursor [Homo
sapiens]
Length = 422
Score = 30.0 bits (66), Expect = 2.2
Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 19/137 (13%)
Query: 86 DGGLPGLEDGDLA-PPASPGIFAEACNNATYVEVWNDFMNRSGEEQERVLRYLEDEGRSK 144
DG L G L PPA P + +A + + W+ + RYL
Sbjct: 98 DGALGGTVTLQLGYPPARPVVSCQAADYENFSCTWSP-----SQISGLPTRYLT------ 146
Query: 145 ARRRGPGRGEDRRREDPAYTPRECFQRISRRLRAVLKRSRIPMETLETWEERLLRFFSVS 204
+ R+ G D +R P+ P C Q L +R + E W + + V+
Sbjct: 147 SYRKKTVLGADSQRRSPSTGPWPCPQD-------PLGAARCVVHGAEFWSQYRINVTEVN 199
Query: 205 PQAVYTAMLDNSFERLL 221
P T +LD S + +L
Sbjct: 200 PLGASTRLLDVSLQSIL 216
>gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1
[Homo sapiens]
Length = 651
Score = 30.0 bits (66), Expect = 2.2
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 8 ECGPEAAEG-TPGGRRLLPLPSCLPALASSQVKRL 41
E G +A+ G P R PLP+C P+L S +V+RL
Sbjct: 590 EKGEKASTGRVPPSREKPPLPACEPSLPSPKVRRL 624
>gi|65301141 PH domain and leucine rich repeat protein
phosphatase-like [Homo sapiens]
Length = 1323
Score = 29.6 bits (65), Expect = 2.9
Identities = 40/153 (26%), Positives = 60/153 (39%), Gaps = 25/153 (16%)
Query: 25 PLPSCLPALASSQVKRLSA-SRRKQHFINQAVRNSDLVPKAKGRKSLQRLENTQYLLTLL 83
PL P L S + R S R+Q+ +N + L+P +K R LQ+ +T L
Sbjct: 1184 PLIESSPTLCSEEHARGSCFGIRRQNSVNSGM----LLPMSKDRMELQKSPSTSCLYGKK 1239
Query: 84 ETDGGLPGLED-------GDLAPPASPGIFAEACNNATYVEVWNDFMNRSGEEQERVLRY 136
++G + LED P G FA T +E E+Q V
Sbjct: 1240 LSNGSIVPLEDSLNLIEVATEVPKRKTGYFAA----PTQME---------PEDQFVVPHD 1286
Query: 137 LEDEGRSKARRRGPGRGEDRRREDPAYTPRECF 169
LE+E + + ++ R E E+ P E F
Sbjct: 1287 LEEEVKEQMKQHQDSRLEPEPHEEDRTEPPEEF 1319
>gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]
Length = 484
Score = 29.6 bits (65), Expect = 2.9
Identities = 20/81 (24%), Positives = 34/81 (41%)
Query: 104 GIFAEACNNATYVEVWNDFMNRSGEEQERVLRYLEDEGRSKARRRGPGRGEDRRREDPAY 163
G+ + + + T + + M R E Q + +E + + + RR R RRR P+
Sbjct: 204 GLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSS 263
Query: 164 TPRECFQRISRRLRAVLKRSR 184
+ + SRR RSR
Sbjct: 264 SRHRRSRSRSRRRSHSKSRSR 284
>gi|58000465 ripply2 protein [Homo sapiens]
Length = 128
Score = 29.3 bits (64), Expect = 3.8
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 83 LETDGGLPGLEDGDLAPPASPGIFAEACNNATYVEVWNDFMNRSGEEQERVLRYLEDEGR 142
+E GG G E G A A+ G A ++ Y W +++ G+++E +
Sbjct: 1 MENAGGAEGTESGAAACAATDGPTRRAGADSGYAGFWRPWVDAGGKKEEETPNH-----A 55
Query: 143 SKARRRGPG 151
++A GPG
Sbjct: 56 AEAMPDGPG 64
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 29.3 bits (64), Expect = 3.8
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 140 EGRSKARRRGPGRGEDRRREDPAYTPRECFQRISRRLRAVLKRSRIPMETLETWEERLLR 199
EG S A+ GP E R + PA T F + SR+L+ L+R P + +
Sbjct: 945 EGLSSAQPNGPPEAEPRPPQSPASTASFIFSKGSRKLQ--LERPVSPETQADLQRNLVAE 1002
Query: 200 FFSVSPQ 206
S+S Q
Sbjct: 1003 LRSISEQ 1009
>gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens]
Length = 1564
Score = 29.3 bits (64), Expect = 3.8
Identities = 19/65 (29%), Positives = 27/65 (41%)
Query: 120 NDFMNRSGEEQERVLRYLEDEGRSKARRRGPGRGEDRRREDPAYTPRECFQRISRRLRAV 179
ND + R +ER + ++D +AR R R DR RE R+ + R L
Sbjct: 651 NDELERDERREERRVDRVDDRRDERARERDRERERDRERERERERERDREREKERELERE 710
Query: 180 LKRSR 184
R R
Sbjct: 711 RARER 715
>gi|4504195 general transcription factor IIE, polypeptide 2, beta
34kDa [Homo sapiens]
Length = 291
Score = 28.9 bits (63), Expect = 4.9
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 129 EQERVLRYLEDEGRSKARRRGPGR-GEDRRREDPAYTPRECFQRISRRLRAVLK 181
++E++ YL+ +G S + GP + +RR+ PA + F+ + L VLK
Sbjct: 229 DEEKIEEYLKRQGISSMQESGPKKVAPIQRRKKPASQKKRRFKTHNEHLAGVLK 282
>gi|14165383 protocadherin alpha 10 isoform 3 precursor [Homo
sapiens]
Length = 685
Score = 28.9 bits (63), Expect = 4.9
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 56 RNSDLVPKAKGRKSLQRLENTQYLLTLLETDGGLP 90
++ D P RK L R EN Q L L TDGG P
Sbjct: 185 KDKDKFPVLVLRKLLDREENPQLKLLLTATDGGKP 219
>gi|14165381 protocadherin alpha 10 isoform 2 precursor [Homo
sapiens]
Length = 844
Score = 28.9 bits (63), Expect = 4.9
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 56 RNSDLVPKAKGRKSLQRLENTQYLLTLLETDGGLP 90
++ D P RK L R EN Q L L TDGG P
Sbjct: 185 KDKDKFPVLVLRKLLDREENPQLKLLLTATDGGKP 219
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,383,143
Number of Sequences: 37866
Number of extensions: 516603
Number of successful extensions: 2284
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 2256
Number of HSP's gapped (non-prelim): 51
length of query: 268
length of database: 18,247,518
effective HSP length: 100
effective length of query: 168
effective length of database: 14,460,918
effective search space: 2429434224
effective search space used: 2429434224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.