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Search of human proteins with 33147080
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33147080 STAM binding protein-like 1 [Homo sapiens]
(436 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33147080 STAM binding protein-like 1 [Homo sapiens] 877 0.0
gi|47132534 STAM binding protein [Homo sapiens] 489 e-138
gi|42519912 STAM binding protein [Homo sapiens] 489 e-138
gi|5453545 STAM binding protein [Homo sapiens] 489 e-138
gi|5031981 proteasome 26S subunit, non-ATPase 14 [Homo sapiens] 47 4e-05
gi|38027923 COP9 signalosome subunit 5 [Homo sapiens] 39 0.007
gi|221139761 zinc finger protein 853 [Homo sapiens] 39 0.012
gi|169178850 PREDICTED: similar to coiled-coil domain containing... 39 0.012
gi|56549694 enabled homolog isoform a [Homo sapiens] 37 0.027
gi|39930375 enabled homolog isoform b [Homo sapiens] 37 0.027
gi|93102364 SWAP-70 protein [Homo sapiens] 37 0.027
gi|83716024 kinesin family member 21B [Homo sapiens] 37 0.027
gi|190684694 ubiquitin specific peptidase 8 [Homo sapiens] 37 0.035
gi|190684692 ubiquitin specific peptidase 8 [Homo sapiens] 37 0.035
gi|190684690 ubiquitin specific peptidase 8 [Homo sapiens] 37 0.035
gi|55769554 protein tyrosine phosphatase, receptor type, f polyp... 37 0.046
gi|75677376 coiled-coil domain containing 62 isoform b [Homo sap... 36 0.060
gi|30348972 coiled-coil domain containing 62 isoform a [Homo sap... 36 0.060
gi|65507403 SEC15-like 1 isoform a [Homo sapiens] 36 0.060
gi|62243652 SEC15-like 1 isoform b [Homo sapiens] 36 0.060
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 36 0.078
gi|53729363 leucine rich repeat and sterile alpha motif containi... 35 0.10
gi|53729361 leucine rich repeat and sterile alpha motif containi... 35 0.10
gi|53729359 leucine rich repeat and sterile alpha motif containi... 35 0.10
gi|102467235 inner centromere protein antigens 135/155kDa isofor... 35 0.10
gi|102467242 inner centromere protein antigens 135/155kDa isofor... 35 0.10
gi|31542699 MPN domain containing isoform 1 [Homo sapiens] 35 0.13
gi|169218106 PREDICTED: hypothetical protein, partial [Homo sapi... 35 0.13
gi|64762484 BRCA1/BRCA2-containing complex, subunit 3 isoform 2 ... 35 0.13
gi|51317384 GLE1 RNA export mediator homolog isoform 1 [Homo sap... 35 0.13
>gi|33147080 STAM binding protein-like 1 [Homo sapiens]
Length = 436
Score = 877 bits (2267), Expect = 0.0
Identities = 436/436 (100%), Positives = 436/436 (100%)
Query: 1 MDQPFTVNSLKKLAAMPDHTDVSLSPEERVRALSKLGCNITISEDITPRRYFRSGVEMER 60
MDQPFTVNSLKKLAAMPDHTDVSLSPEERVRALSKLGCNITISEDITPRRYFRSGVEMER
Sbjct: 1 MDQPFTVNSLKKLAAMPDHTDVSLSPEERVRALSKLGCNITISEDITPRRYFRSGVEMER 60
Query: 61 MASVYLEEGNLENAFVLYNKFITLFVEKLPNHRDYQQCAVPEKQDIMKKLKEIAFPRTDE 120
MASVYLEEGNLENAFVLYNKFITLFVEKLPNHRDYQQCAVPEKQDIMKKLKEIAFPRTDE
Sbjct: 61 MASVYLEEGNLENAFVLYNKFITLFVEKLPNHRDYQQCAVPEKQDIMKKLKEIAFPRTDE 120
Query: 121 LKNDLLKKYNVEYQEYLQSKNKYKAEILKKLEHQRLIEAERKRIAQMRQQQLESEQFLFF 180
LKNDLLKKYNVEYQEYLQSKNKYKAEILKKLEHQRLIEAERKRIAQMRQQQLESEQFLFF
Sbjct: 121 LKNDLLKKYNVEYQEYLQSKNKYKAEILKKLEHQRLIEAERKRIAQMRQQQLESEQFLFF 180
Query: 181 EDQLKKQELARGQMRSQQTSGLSEQIDGSALSCFSTHQNNSLLNVFADQPNKSDATNYAS 240
EDQLKKQELARGQMRSQQTSGLSEQIDGSALSCFSTHQNNSLLNVFADQPNKSDATNYAS
Sbjct: 181 EDQLKKQELARGQMRSQQTSGLSEQIDGSALSCFSTHQNNSLLNVFADQPNKSDATNYAS 240
Query: 241 HSPPVNRALTPAATLSAVQNLVVEGLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGK 300
HSPPVNRALTPAATLSAVQNLVVEGLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGK
Sbjct: 241 HSPPVNRALTPAATLSAVQNLVVEGLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGK 300
Query: 301 LTHNEFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLGWIHTHPTQTAFLSSVD 360
LTHNEFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLGWIHTHPTQTAFLSSVD
Sbjct: 301 LTHNEFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLGWIHTHPTQTAFLSSVD 360
Query: 361 LHTHCSYQLMLPEAIAIVCSPKHKDTGIFRLTNAGMLEVSACKKKGFHPHTKEPRLFSIC 420
LHTHCSYQLMLPEAIAIVCSPKHKDTGIFRLTNAGMLEVSACKKKGFHPHTKEPRLFSIC
Sbjct: 361 LHTHCSYQLMLPEAIAIVCSPKHKDTGIFRLTNAGMLEVSACKKKGFHPHTKEPRLFSIC 420
Query: 421 KHVLVKDIKIIVLDLR 436
KHVLVKDIKIIVLDLR
Sbjct: 421 KHVLVKDIKIIVLDLR 436
>gi|47132534 STAM binding protein [Homo sapiens]
Length = 424
Score = 489 bits (1260), Expect = e-138
Identities = 240/430 (55%), Positives = 314/430 (73%), Gaps = 15/430 (3%)
Query: 16 MPDHTDVSLSPEERVRALSKLGCNITISEDITPRRYFRSGVEMERMASVYLEEGNLENAF 75
M DH DVSL PE+RVRALS+LG + ++EDI PRRYFRSGVE+ RMAS+Y EEGN+E+AF
Sbjct: 1 MSDHGDVSLPPEDRVRALSQLGSAVEVNEDIPPRRYFRSGVEIIRMASIYSEEGNIEHAF 60
Query: 76 VLYNKFITLFVEKLPNHRDYQQCAVPEKQDIMKKLKEIAFPRTDELKNDLLKKYNVEYQE 135
+LYNK+ITLF+EKLP HRDY+ +PEK+D +KKLKEIAFP+ +ELK +LLK+Y EY E
Sbjct: 61 ILYNKYITLFIEKLPKHRDYKSAVIPEKKDTVKKLKEIAFPKAEELKAELLKRYTKEYTE 120
Query: 136 YLQSKNKYKAEILKKLEHQRLIEAERKRIAQMRQQQLESEQFLFFEDQLKKQELARGQMR 195
Y + K K E+ + + Q+ +E E++R+AQ +QQQLE EQF FE+ ++ QEL + +++
Sbjct: 121 YNEEKKKEAEELARNMAIQQELEKEKQRVAQQKQQQLEQEQFHAFEEMIRNQELEKERLK 180
Query: 196 SQQTSG---------LSEQIDGSALSCFSTHQNNSLLNVFADQPNKSDATNYASHSPPVN 246
Q G L ++ +L F T L V + QP+ T + P V+
Sbjct: 181 IVQEFGKVDPGLGGPLVPDLEKPSLDVFPT------LTVSSIQPSDCHTTVRPAKPPVVD 234
Query: 247 RALTPAATLSAVQNLVVEGLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEF 306
R+L P A ++ ++GLR VV+P LC +FLQLA +NT RG+ETCGILCGKL NEF
Sbjct: 235 RSLKPGALSNSESIPTIDGLRHVVVPGRLCPQFLQLASANTARGVETCGILCGKLMRNEF 294
Query: 307 TITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLGWIHTHPTQTAFLSSVDLHTHCS 366
TITHV++PKQSAG DYC+ EN EELF +QDQ L+TLGWIHTHPTQTAFLSSVDLHTHCS
Sbjct: 295 TITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITLGWIHTHPTQTAFLSSVDLHTHCS 354
Query: 367 YQLMLPEAIAIVCSPKHKDTGIFRLTNAGMLEVSACKKKGFHPHTKEPRLFSICKHVLVK 426
YQ+MLPE++AIVCSPK ++TG F+LT+ G+ E+S+C++KGFHPH+K+P LF C HV V
Sbjct: 355 YQMMLPESVAIVCSPKFQETGFFKLTDHGLEEISSCRQKGFHPHSKDPPLFCSCSHVTVV 414
Query: 427 DIKIIVLDLR 436
D + + DLR
Sbjct: 415 DRAVTITDLR 424
>gi|42519912 STAM binding protein [Homo sapiens]
Length = 424
Score = 489 bits (1260), Expect = e-138
Identities = 240/430 (55%), Positives = 314/430 (73%), Gaps = 15/430 (3%)
Query: 16 MPDHTDVSLSPEERVRALSKLGCNITISEDITPRRYFRSGVEMERMASVYLEEGNLENAF 75
M DH DVSL PE+RVRALS+LG + ++EDI PRRYFRSGVE+ RMAS+Y EEGN+E+AF
Sbjct: 1 MSDHGDVSLPPEDRVRALSQLGSAVEVNEDIPPRRYFRSGVEIIRMASIYSEEGNIEHAF 60
Query: 76 VLYNKFITLFVEKLPNHRDYQQCAVPEKQDIMKKLKEIAFPRTDELKNDLLKKYNVEYQE 135
+LYNK+ITLF+EKLP HRDY+ +PEK+D +KKLKEIAFP+ +ELK +LLK+Y EY E
Sbjct: 61 ILYNKYITLFIEKLPKHRDYKSAVIPEKKDTVKKLKEIAFPKAEELKAELLKRYTKEYTE 120
Query: 136 YLQSKNKYKAEILKKLEHQRLIEAERKRIAQMRQQQLESEQFLFFEDQLKKQELARGQMR 195
Y + K K E+ + + Q+ +E E++R+AQ +QQQLE EQF FE+ ++ QEL + +++
Sbjct: 121 YNEEKKKEAEELARNMAIQQELEKEKQRVAQQKQQQLEQEQFHAFEEMIRNQELEKERLK 180
Query: 196 SQQTSG---------LSEQIDGSALSCFSTHQNNSLLNVFADQPNKSDATNYASHSPPVN 246
Q G L ++ +L F T L V + QP+ T + P V+
Sbjct: 181 IVQEFGKVDPGLGGPLVPDLEKPSLDVFPT------LTVSSIQPSDCHTTVRPAKPPVVD 234
Query: 247 RALTPAATLSAVQNLVVEGLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEF 306
R+L P A ++ ++GLR VV+P LC +FLQLA +NT RG+ETCGILCGKL NEF
Sbjct: 235 RSLKPGALSNSESIPTIDGLRHVVVPGRLCPQFLQLASANTARGVETCGILCGKLMRNEF 294
Query: 307 TITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLGWIHTHPTQTAFLSSVDLHTHCS 366
TITHV++PKQSAG DYC+ EN EELF +QDQ L+TLGWIHTHPTQTAFLSSVDLHTHCS
Sbjct: 295 TITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITLGWIHTHPTQTAFLSSVDLHTHCS 354
Query: 367 YQLMLPEAIAIVCSPKHKDTGIFRLTNAGMLEVSACKKKGFHPHTKEPRLFSICKHVLVK 426
YQ+MLPE++AIVCSPK ++TG F+LT+ G+ E+S+C++KGFHPH+K+P LF C HV V
Sbjct: 355 YQMMLPESVAIVCSPKFQETGFFKLTDHGLEEISSCRQKGFHPHSKDPPLFCSCSHVTVV 414
Query: 427 DIKIIVLDLR 436
D + + DLR
Sbjct: 415 DRAVTITDLR 424
>gi|5453545 STAM binding protein [Homo sapiens]
Length = 424
Score = 489 bits (1260), Expect = e-138
Identities = 240/430 (55%), Positives = 314/430 (73%), Gaps = 15/430 (3%)
Query: 16 MPDHTDVSLSPEERVRALSKLGCNITISEDITPRRYFRSGVEMERMASVYLEEGNLENAF 75
M DH DVSL PE+RVRALS+LG + ++EDI PRRYFRSGVE+ RMAS+Y EEGN+E+AF
Sbjct: 1 MSDHGDVSLPPEDRVRALSQLGSAVEVNEDIPPRRYFRSGVEIIRMASIYSEEGNIEHAF 60
Query: 76 VLYNKFITLFVEKLPNHRDYQQCAVPEKQDIMKKLKEIAFPRTDELKNDLLKKYNVEYQE 135
+LYNK+ITLF+EKLP HRDY+ +PEK+D +KKLKEIAFP+ +ELK +LLK+Y EY E
Sbjct: 61 ILYNKYITLFIEKLPKHRDYKSAVIPEKKDTVKKLKEIAFPKAEELKAELLKRYTKEYTE 120
Query: 136 YLQSKNKYKAEILKKLEHQRLIEAERKRIAQMRQQQLESEQFLFFEDQLKKQELARGQMR 195
Y + K K E+ + + Q+ +E E++R+AQ +QQQLE EQF FE+ ++ QEL + +++
Sbjct: 121 YNEEKKKEAEELARNMAIQQELEKEKQRVAQQKQQQLEQEQFHAFEEMIRNQELEKERLK 180
Query: 196 SQQTSG---------LSEQIDGSALSCFSTHQNNSLLNVFADQPNKSDATNYASHSPPVN 246
Q G L ++ +L F T L V + QP+ T + P V+
Sbjct: 181 IVQEFGKVDPGLGGPLVPDLEKPSLDVFPT------LTVSSIQPSDCHTTVRPAKPPVVD 234
Query: 247 RALTPAATLSAVQNLVVEGLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEF 306
R+L P A ++ ++GLR VV+P LC +FLQLA +NT RG+ETCGILCGKL NEF
Sbjct: 235 RSLKPGALSNSESIPTIDGLRHVVVPGRLCPQFLQLASANTARGVETCGILCGKLMRNEF 294
Query: 307 TITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLGWIHTHPTQTAFLSSVDLHTHCS 366
TITHV++PKQSAG DYC+ EN EELF +QDQ L+TLGWIHTHPTQTAFLSSVDLHTHCS
Sbjct: 295 TITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITLGWIHTHPTQTAFLSSVDLHTHCS 354
Query: 367 YQLMLPEAIAIVCSPKHKDTGIFRLTNAGMLEVSACKKKGFHPHTKEPRLFSICKHVLVK 426
YQ+MLPE++AIVCSPK ++TG F+LT+ G+ E+S+C++KGFHPH+K+P LF C HV V
Sbjct: 355 YQMMLPESVAIVCSPKFQETGFFKLTDHGLEEISSCRQKGFHPHSKDPPLFCSCSHVTVV 414
Query: 427 DIKIIVLDLR 436
D + + DLR
Sbjct: 415 DRAVTITDLR 424
>gi|5031981 proteasome 26S subunit, non-ATPase 14 [Homo sapiens]
Length = 310
Score = 46.6 bits (109), Expect = 4e-05
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 291 IETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENVEELFNV-------QDQHDLLTL 343
+E G++ G+ +++T+ + V +E V+ +F Q + +
Sbjct: 51 MEVMGLMLGEFV-DDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVV 109
Query: 344 GWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHKDTG-----IFRLTNAGML 397
GW H+HP +LS VD++T S++ + A+A+V P G FRL NA M+
Sbjct: 110 GWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMM 168
>gi|38027923 COP9 signalosome subunit 5 [Homo sapiens]
Length = 334
Score = 39.3 bits (90), Expect = 0.007
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 26/138 (18%)
Query: 291 IETCGILCGKLTHNEFTI----------THVIVPKQSAGPDYCD--MENVEELFNVQDQH 338
+E G++ GK+ I T V Q+A +Y +EN +++ +++
Sbjct: 75 LEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLEN-- 132
Query: 339 DLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHKDTGIFRLTNAGMLE 398
+GW H+HP +LS +D+ T Q +A+V P R +AG +
Sbjct: 133 ---AIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPT-------RTISAGKVN 182
Query: 399 VSACK--KKGFHPHTKEP 414
+ A + KG+ P + P
Sbjct: 183 LGAFRTYPKGYKPPDEGP 200
>gi|221139761 zinc finger protein 853 [Homo sapiens]
Length = 659
Score = 38.5 bits (88), Expect = 0.012
Identities = 20/71 (28%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 132 EYQEYLQSKNKYKAEILKKLEHQRLIEAERKRIAQMRQQQLESEQFLFFEDQLKKQELAR 191
+ QE LQ++ + ++L++ E Q + + +++ Q +Q+QL+ +Q L ++QL++Q+ +
Sbjct: 172 QQQEQLQTQQAQEQQVLQQQE-QLQQQVQEQQLLQQQQEQLQQQQLLQQQEQLQQQQFQQ 230
Query: 192 GQMRSQQTSGL 202
Q + QQ L
Sbjct: 231 QQEQLQQQQQL 241
Score = 31.2 bits (69), Expect = 1.9
Identities = 19/94 (20%), Positives = 52/94 (55%), Gaps = 11/94 (11%)
Query: 96 QQCAVPEKQDIMKKLKEIAFPRTDELKNDLLKKYNVEYQEYLQSKNKYKAEILKKLEHQR 155
QQ +++ + ++ + + + +L+ LL++ + Q+ L + + + + Q+
Sbjct: 225 QQQFQQQQEQLQQQQQLLLLQQQGQLQQQLLQQQQAQLQQQLLEQQQAQLQ-------QQ 277
Query: 156 LIEAERKRIAQMRQQQLESEQFLFFEDQLKKQEL 189
L+ +++++ Q +QQQL +Q ++QL++Q+L
Sbjct: 278 LLLQQQEQLQQQQQQQLLQQQ----QEQLQQQQL 307
Score = 29.6 bits (65), Expect = 5.6
Identities = 26/124 (20%), Positives = 61/124 (49%), Gaps = 8/124 (6%)
Query: 87 EKLPNHRDYQQCAVPEKQDIMKKLKEIAFPRTDELKNDLLKKYNVEYQEYLQSKNKYKAE 146
+++ ++ Q V E+Q + ++ +++ + + + L ++ + QE LQ + +
Sbjct: 185 QQVLQQQEQLQQQVQEQQLLQQQQEQLQQQQLLQQQEQLQQQQFQQQQEQLQQQQQLLLL 244
Query: 147 ILKKLEHQRLIEAERKRIAQMRQQQLESEQF-----LFFEDQLKKQELARGQMRSQQTSG 201
+ Q+L++ ++ AQ++QQ LE +Q L + Q + Q+ + Q+ QQ
Sbjct: 245 QQQGQLQQQLLQQQQ---AQLQQQLLEQQQAQLQQQLLLQQQEQLQQQQQQQLLQQQQEQ 301
Query: 202 LSEQ 205
L +Q
Sbjct: 302 LQQQ 305
Score = 28.9 bits (63), Expect = 9.6
Identities = 26/128 (20%), Positives = 62/128 (48%), Gaps = 18/128 (14%)
Query: 86 VEKLPNHRDYQQCAVPEKQDIMKKLKEIAFPRTDE---LKNDLLKKYNVEYQEYLQSKNK 142
++ + + Q V E+Q + ++ +++ + E L+ + V+ Q+ LQ + +
Sbjct: 150 LQLMHQQQQLQPQQVQEQQRLQQQQEQLQTQQAQEQQVLQQQEQLQQQVQEQQLLQQQQE 209
Query: 143 YKAEILKKLEHQRLIEAERKRIAQMRQQQLESEQFLFFEDQ----LKKQELARGQMRSQQ 198
+L+ Q+L++ + Q++QQQ + +Q + Q L++Q + Q+ QQ
Sbjct: 210 -------QLQQQQLLQQQE----QLQQQQFQQQQEQLQQQQQLLLLQQQGQLQQQLLQQQ 258
Query: 199 TSGLSEQI 206
+ L +Q+
Sbjct: 259 QAQLQQQL 266
>gi|169178850 PREDICTED: similar to coiled-coil domain containing 29
[Homo sapiens]
Length = 197
Score = 38.5 bits (88), Expect = 0.012
Identities = 38/184 (20%), Positives = 74/184 (40%), Gaps = 32/184 (17%)
Query: 117 RTDELKNDLL-KKYNVEYQEYLQSKNKYKAEILKKLEHQRLIEAERKRIAQMRQQ--QLE 173
+TD+LK D+L KK ++ + + + ++ + + ++I+ E + +++Q+ +LE
Sbjct: 21 KTDQLKMDILIKKLKQKFDDLMAEEEAVSSKCVNLSKDNQVIQQELLSMKKVQQECEKLE 80
Query: 174 SEQFLFFEDQLKKQELARGQMRSQQTSGLSEQIDGSALSCFSTHQNNSLLNVFADQPNKS 233
Q + E+ L TH NS++ + Q KS
Sbjct: 81 ENQKMLEEEILN----------------------------LKTHMENSMVELSKLQEYKS 112
Query: 234 DATNYASHSPPVNRALTPAATLSAVQNLVVEGLRCVVLPEDLCHKFLQLAESNTVRGIET 293
+ A + + + L V+ ++ E R V + + CH L ES +G
Sbjct: 113 ELDERAMQAVEKLKEIHLQMELDCVEQIIRETKRTVAVLDTCCH-LLSSLESTVYQGPGQ 171
Query: 294 CGIL 297
CG L
Sbjct: 172 CGAL 175
>gi|56549694 enabled homolog isoform a [Homo sapiens]
Length = 591
Score = 37.4 bits (85), Expect = 0.027
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 26/124 (20%)
Query: 53 RSGVEMERMASVYLEEGNLENAFVLYNKFITLFVEKLPNHRDYQQCAVPEKQDIMKKLKE 112
R +E ERM LE LE E+L R Q+ E+Q+
Sbjct: 158 RERLERERMERERLERERLER-------------ERLERERLEQEQLERERQE------- 197
Query: 113 IAFPRTDELKNDLLKKYNVEYQEYLQSKNKYKAEILKKLEHQRLIEAERKRIAQMRQQQL 172
E + L ++ +E QE L+ + + E ++ E +RL ER+R + RQ+QL
Sbjct: 198 ------RERQERLERQERLERQERLERQERLDRERQERQERERLERLERERQERERQEQL 251
Query: 173 ESEQ 176
E EQ
Sbjct: 252 EREQ 255
Score = 32.3 bits (72), Expect = 0.87
Identities = 21/91 (23%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 117 RTDELKNDLLKKYNVEYQEYLQSKNKYKAEILKKLEHQRLIEAERKRIAQMRQQQLESEQ 176
R EL+ + L++ +E + + + + + ++LE ++L ER+R + RQ++LE ++
Sbjct: 152 RQKELERERLERERMERERLERERLERERLERERLEQEQL---ERERQERERQERLERQE 208
Query: 177 FLFFEDQLKKQELARGQMRSQQTSGLSEQID 207
L +++L++QE + + +Q E+++
Sbjct: 209 RLERQERLERQERLDRERQERQERERLERLE 239
>gi|39930375 enabled homolog isoform b [Homo sapiens]
Length = 570
Score = 37.4 bits (85), Expect = 0.027
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 26/124 (20%)
Query: 53 RSGVEMERMASVYLEEGNLENAFVLYNKFITLFVEKLPNHRDYQQCAVPEKQDIMKKLKE 112
R +E ERM LE LE E+L R Q+ E+Q+
Sbjct: 158 RERLERERMERERLERERLER-------------ERLERERLEQEQLERERQE------- 197
Query: 113 IAFPRTDELKNDLLKKYNVEYQEYLQSKNKYKAEILKKLEHQRLIEAERKRIAQMRQQQL 172
E + L ++ +E QE L+ + + E ++ E +RL ER+R + RQ+QL
Sbjct: 198 ------RERQERLERQERLERQERLERQERLDRERQERQERERLERLERERQERERQEQL 251
Query: 173 ESEQ 176
E EQ
Sbjct: 252 EREQ 255
Score = 32.3 bits (72), Expect = 0.87
Identities = 21/91 (23%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 117 RTDELKNDLLKKYNVEYQEYLQSKNKYKAEILKKLEHQRLIEAERKRIAQMRQQQLESEQ 176
R EL+ + L++ +E + + + + + ++LE ++L ER+R + RQ++LE ++
Sbjct: 152 RQKELERERLERERMERERLERERLERERLERERLEQEQL---ERERQERERQERLERQE 208
Query: 177 FLFFEDQLKKQELARGQMRSQQTSGLSEQID 207
L +++L++QE + + +Q E+++
Sbjct: 209 RLERQERLERQERLDRERQERQERERLERLE 239
>gi|93102364 SWAP-70 protein [Homo sapiens]
Length = 585
Score = 37.4 bits (85), Expect = 0.027
Identities = 44/174 (25%), Positives = 88/174 (50%), Gaps = 16/174 (9%)
Query: 27 EERVRALSKLGCNITISEDITPRRYFRSGVEMERMASVYLE-EGNLENAFVLYNKFITLF 85
EE+ R +++ S ++ + R +E E++A E E L+ L + ++ L
Sbjct: 372 EEKKRLQTQVELQARFSTELEREKLIRQQME-EQVAQKSSELEQYLQRVRELEDMYLKL- 429
Query: 86 VEKLPNHRDYQQCAVPEKQDIMKKLKEIAFPRTDELKNDLLKKYNVEYQEYLQSKNKYKA 145
E L + R +Q ++ ++KL + + K L+K+++E Q+ +Q+ K
Sbjct: 430 QEALEDERQARQ-----DEETVRKL-QARLLEEESSKRAELEKWHLEQQQAIQTTEAEKQ 483
Query: 146 EILKKLEHQRLI--EAERKRIAQMRQQQLESEQFL-FFEDQLKKQELARGQMRS 196
E LE+QR++ +A ++ + Q+ Q +LE +Q L +E+ KK E+A + +S
Sbjct: 484 E----LENQRVLKEQALQEAMEQLEQLELERKQALEQYEEVKKKLEMATNKTKS 533
>gi|83716024 kinesin family member 21B [Homo sapiens]
Length = 1624
Score = 37.4 bits (85), Expect = 0.027
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 17/128 (13%)
Query: 92 HRDYQQCAVPEKQDIMKKLKEIAFPRTDELKNDLLKKYNVEYQEYLQSKNKYKAEILKKL 151
+RD Q+ +K+ + + R LKK E E ++K ++ ++
Sbjct: 718 NRDLQKLQAAQKEHARLLKNQSRYERE-------LKKLQAEVAEMKKAKVALMKQMREEQ 770
Query: 152 EHQRLIEAERKR-IAQMRQQQLESE-QFLFFEDQLKKQELARGQMRSQQTSGL------- 202
+ +RL+E +R R IAQ++++Q E Q E Q ++QE+ + ++Q+ S L
Sbjct: 771 QRRRLVETKRNREIAQLKKEQRRQEFQIRALESQKRQQEMVL-RRKTQEVSALRRLAKPM 829
Query: 203 SEQIDGSA 210
SE++ G A
Sbjct: 830 SERVAGRA 837
>gi|190684694 ubiquitin specific peptidase 8 [Homo sapiens]
Length = 1118
Score = 37.0 bits (84), Expect = 0.035
Identities = 51/228 (22%), Positives = 99/228 (43%), Gaps = 32/228 (14%)
Query: 44 EDITPRRYFRSGVEMERMASVYLEEGNLENAFVLYNKFITLF--VEKLPNHRDYQQC--A 99
E I+ + Y S +++ + A + + E A+VLY K++T++ ++K P+ + Q +
Sbjct: 29 EKISTKSYVHSALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLIKKRPDFKQQQDYFHS 88
Query: 100 VPEKQDIMKKLKEIAFPRTDELKNDLLKKYNVEYQEYLQSKNKYKAEILKKLEHQRLIEA 159
+ +I K ++E + L L +Y +AE+ KKLE + E
Sbjct: 89 ILGPGNIKKAVEE-----AERLSESLKLRYE-------------EAEVRKKLEEKDRQE- 129
Query: 160 ERKRIAQMRQQQLESEQFLFFEDQLK-------KQELARGQMRSQQTSGLSEQIDGSALS 212
E +R+ Q RQ+ + + L+ K + + G+ + + I L
Sbjct: 130 EAQRLQQKRQETGREDGGTLAKGSLENVLDSKDKTQKSNGEKNEKCETKEKGAITAKELY 189
Query: 213 CFSTHQNNSLLNVFADQ-PNKSDATNYASHSPPVNRALTPAATLSAVQ 259
T +N SL+ + A + + D+ S S P A++P T S ++
Sbjct: 190 TMMTDKNISLIIMDARRMQDYQDSCILHSLSVP-EEAISPGVTASWIE 236
Score = 28.9 bits (63), Expect = 9.6
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 125 LLKKYNVEYQEYLQSKNKYKAEILKKLEHQRLI----EAERKRIAQMRQQQLESEQFLFF 180
LL + N + +E + + + + E L+K E ++ EAE I + +QQ+ + E
Sbjct: 471 LLMEKNKQEKELRERQQEEQKEKLRKEEQEQKAKKKQEAEENEITE-KQQKAKEEMEKKE 529
Query: 181 EDQLKKQELARGQMRSQQTSGLSEQ 205
+Q KK++ R ++ +G+ Q
Sbjct: 530 SEQAKKEDKETSAKRGKEITGVKRQ 554
>gi|190684692 ubiquitin specific peptidase 8 [Homo sapiens]
Length = 1118
Score = 37.0 bits (84), Expect = 0.035
Identities = 51/228 (22%), Positives = 99/228 (43%), Gaps = 32/228 (14%)
Query: 44 EDITPRRYFRSGVEMERMASVYLEEGNLENAFVLYNKFITLF--VEKLPNHRDYQQC--A 99
E I+ + Y S +++ + A + + E A+VLY K++T++ ++K P+ + Q +
Sbjct: 29 EKISTKSYVHSALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLIKKRPDFKQQQDYFHS 88
Query: 100 VPEKQDIMKKLKEIAFPRTDELKNDLLKKYNVEYQEYLQSKNKYKAEILKKLEHQRLIEA 159
+ +I K ++E + L L +Y +AE+ KKLE + E
Sbjct: 89 ILGPGNIKKAVEE-----AERLSESLKLRYE-------------EAEVRKKLEEKDRQE- 129
Query: 160 ERKRIAQMRQQQLESEQFLFFEDQLK-------KQELARGQMRSQQTSGLSEQIDGSALS 212
E +R+ Q RQ+ + + L+ K + + G+ + + I L
Sbjct: 130 EAQRLQQKRQETGREDGGTLAKGSLENVLDSKDKTQKSNGEKNEKCETKEKGAITAKELY 189
Query: 213 CFSTHQNNSLLNVFADQ-PNKSDATNYASHSPPVNRALTPAATLSAVQ 259
T +N SL+ + A + + D+ S S P A++P T S ++
Sbjct: 190 TMMTDKNISLIIMDARRMQDYQDSCILHSLSVP-EEAISPGVTASWIE 236
Score = 28.9 bits (63), Expect = 9.6
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 125 LLKKYNVEYQEYLQSKNKYKAEILKKLEHQRLI----EAERKRIAQMRQQQLESEQFLFF 180
LL + N + +E + + + + E L+K E ++ EAE I + +QQ+ + E
Sbjct: 471 LLMEKNKQEKELRERQQEEQKEKLRKEEQEQKAKKKQEAEENEITE-KQQKAKEEMEKKE 529
Query: 181 EDQLKKQELARGQMRSQQTSGLSEQ 205
+Q KK++ R ++ +G+ Q
Sbjct: 530 SEQAKKEDKETSAKRGKEITGVKRQ 554
>gi|190684690 ubiquitin specific peptidase 8 [Homo sapiens]
Length = 1118
Score = 37.0 bits (84), Expect = 0.035
Identities = 51/228 (22%), Positives = 99/228 (43%), Gaps = 32/228 (14%)
Query: 44 EDITPRRYFRSGVEMERMASVYLEEGNLENAFVLYNKFITLF--VEKLPNHRDYQQC--A 99
E I+ + Y S +++ + A + + E A+VLY K++T++ ++K P+ + Q +
Sbjct: 29 EKISTKSYVHSALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLIKKRPDFKQQQDYFHS 88
Query: 100 VPEKQDIMKKLKEIAFPRTDELKNDLLKKYNVEYQEYLQSKNKYKAEILKKLEHQRLIEA 159
+ +I K ++E + L L +Y +AE+ KKLE + E
Sbjct: 89 ILGPGNIKKAVEE-----AERLSESLKLRYE-------------EAEVRKKLEEKDRQE- 129
Query: 160 ERKRIAQMRQQQLESEQFLFFEDQLK-------KQELARGQMRSQQTSGLSEQIDGSALS 212
E +R+ Q RQ+ + + L+ K + + G+ + + I L
Sbjct: 130 EAQRLQQKRQETGREDGGTLAKGSLENVLDSKDKTQKSNGEKNEKCETKEKGAITAKELY 189
Query: 213 CFSTHQNNSLLNVFADQ-PNKSDATNYASHSPPVNRALTPAATLSAVQ 259
T +N SL+ + A + + D+ S S P A++P T S ++
Sbjct: 190 TMMTDKNISLIIMDARRMQDYQDSCILHSLSVP-EEAISPGVTASWIE 236
Score = 28.9 bits (63), Expect = 9.6
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 125 LLKKYNVEYQEYLQSKNKYKAEILKKLEHQRLI----EAERKRIAQMRQQQLESEQFLFF 180
LL + N + +E + + + + E L+K E ++ EAE I + +QQ+ + E
Sbjct: 471 LLMEKNKQEKELRERQQEEQKEKLRKEEQEQKAKKKQEAEENEITE-KQQKAKEEMEKKE 529
Query: 181 EDQLKKQELARGQMRSQQTSGLSEQ 205
+Q KK++ R ++ +G+ Q
Sbjct: 530 SEQAKKEDKETSAKRGKEITGVKRQ 554
>gi|55769554 protein tyrosine phosphatase, receptor type, f
polypeptide (PTPRF), interacting protein (liprin), alpha
4 [Homo sapiens]
Length = 701
Score = 36.6 bits (83), Expect = 0.046
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 17/120 (14%)
Query: 159 AERKRIAQMRQQQLES--EQFLFFEDQLKKQELARGQMRSQQTSGLSEQIDGSALSCFST 216
++ + +A M Q+QL++ E+ +++ + EL ++ ++ TSG E AL+
Sbjct: 83 SDAQTLAMMLQEQLDAINEEIRMIQEEKESTELRAEEIETRVTSGSME-----ALNLKQL 137
Query: 217 HQNNSLLNVFADQPNKSDATNYASHSPPVNRALTPAAT-LSAVQNLVVEGLRCVVLPEDL 275
+ S+ P A + AS SPP++ TP T SA Q+L + + + LP DL
Sbjct: 138 RKRGSI-------PTSLTALSLASASPPLSGRSTPKLTSRSAAQDL--DRMGVMTLPSDL 188
>gi|75677376 coiled-coil domain containing 62 isoform b [Homo
sapiens]
Length = 684
Score = 36.2 bits (82), Expect = 0.060
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 19/142 (13%)
Query: 96 QQCAVPEKQDIMKKLKEIAFPRTDELKNDLLKK--YNVEYQEYL----QSKNKYKAEILK 149
+ C V EKQD +KLK + ++LK DL +K N E +E + Q K+ E+L
Sbjct: 198 ETCIVKEKQDYKQKLKALKI-EVNKLKEDLNEKTTENNEQREEIIRLKQEKSCLHDELLF 256
Query: 150 KLEHQRLIEAERKRIAQMRQQQLESE----QFLFFEDQLKKQELARGQMRSQQTSGL--- 202
+E ++ + E IA+ +Q++ SE + ++ + Q Q L SQ+ +
Sbjct: 257 TVEREKR-KDELLNIAKSKQERTNSELHNLRQIYVKQQSDLQFLNFNVENSQELIQMYDS 315
Query: 203 ----SEQIDGSALSCFSTHQNN 220
S+ +D S C S +NN
Sbjct: 316 KMEESKALDSSRDMCLSDLENN 337
>gi|30348972 coiled-coil domain containing 62 isoform a [Homo
sapiens]
Length = 682
Score = 36.2 bits (82), Expect = 0.060
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 19/142 (13%)
Query: 96 QQCAVPEKQDIMKKLKEIAFPRTDELKNDLLKK--YNVEYQEYL----QSKNKYKAEILK 149
+ C V EKQD +KLK + ++LK DL +K N E +E + Q K+ E+L
Sbjct: 198 ETCIVKEKQDYKQKLKALKI-EVNKLKEDLNEKTTENNEQREEIIRLKQEKSCLHDELLF 256
Query: 150 KLEHQRLIEAERKRIAQMRQQQLESE----QFLFFEDQLKKQELARGQMRSQQTSGL--- 202
+E ++ + E IA+ +Q++ SE + ++ + Q Q L SQ+ +
Sbjct: 257 TVEREKR-KDELLNIAKSKQERTNSELHNLRQIYVKQQSDLQFLNFNVENSQELIQMYDS 315
Query: 203 ----SEQIDGSALSCFSTHQNN 220
S+ +D S C S +NN
Sbjct: 316 KMEESKALDSSRDMCLSDLENN 337
>gi|65507403 SEC15-like 1 isoform a [Homo sapiens]
Length = 804
Score = 36.2 bits (82), Expect = 0.060
Identities = 36/197 (18%), Positives = 83/197 (42%), Gaps = 41/197 (20%)
Query: 42 ISEDITPRRYFRSGVEMERMASVYLEEGNLENAFVLYNKFITLFVEKLPNHR-DYQQCAV 100
+ E ++ +RY+ + ME++ +VY +V +F L +E LP R D ++ ++
Sbjct: 145 LKEQMSAKRYYSALKTMEQLENVYFP-------WVSQYRFCQLMIENLPKLREDIKEISM 197
Query: 101 PEKQDIMKKLKEIAFPRTDELKNDLLKK--YNVEYQEYLQSKNKYKAEILKKLEHQRLIE 158
+ +D ++ +++ +D++ +K+ + + LQ +NK K + R+ E
Sbjct: 198 SDLKDFLESIRK----HSDKIGETAMKQAQHQKTFSVSLQKQNKMKFGKNMYINRDRIPE 253
Query: 159 AERKRIAQ--MRQQQLESEQFLF-------------------------FEDQLKKQELAR 191
+ + + + ++ E+ L FE+ +KQ +
Sbjct: 254 ERNETVLKHSLEEEDENEEEILTVQDLVDFSPVYRCLHIYSVLGDEETFENYYRKQRKKQ 313
Query: 192 GQMRSQQTSGLSEQIDG 208
++ Q S + E +DG
Sbjct: 314 ARLVLQPQSNMHETVDG 330
>gi|62243652 SEC15-like 1 isoform b [Homo sapiens]
Length = 799
Score = 36.2 bits (82), Expect = 0.060
Identities = 36/197 (18%), Positives = 83/197 (42%), Gaps = 41/197 (20%)
Query: 42 ISEDITPRRYFRSGVEMERMASVYLEEGNLENAFVLYNKFITLFVEKLPNHR-DYQQCAV 100
+ E ++ +RY+ + ME++ +VY +V +F L +E LP R D ++ ++
Sbjct: 140 LKEQMSAKRYYSALKTMEQLENVYFP-------WVSQYRFCQLMIENLPKLREDIKEISM 192
Query: 101 PEKQDIMKKLKEIAFPRTDELKNDLLKK--YNVEYQEYLQSKNKYKAEILKKLEHQRLIE 158
+ +D ++ +++ +D++ +K+ + + LQ +NK K + R+ E
Sbjct: 193 SDLKDFLESIRK----HSDKIGETAMKQAQHQKTFSVSLQKQNKMKFGKNMYINRDRIPE 248
Query: 159 AERKRIAQ--MRQQQLESEQFLF-------------------------FEDQLKKQELAR 191
+ + + + ++ E+ L FE+ +KQ +
Sbjct: 249 ERNETVLKHSLEEEDENEEEILTVQDLVDFSPVYRCLHIYSVLGDEETFENYYRKQRKKQ 308
Query: 192 GQMRSQQTSGLSEQIDG 208
++ Q S + E +DG
Sbjct: 309 ARLVLQPQSNMHETVDG 325
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 35.8 bits (81), Expect = 0.078
Identities = 19/81 (23%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 125 LLKKYNVEYQEYLQSKNKYKAEILKKLEHQRLIEAERKR-IAQMRQQQLESEQFLFFEDQ 183
L ++ ++ Q+ LQ + + + + ++L+ Q+L + ++++ + Q +QQQL+ +Q + Q
Sbjct: 3900 LQQQQQLQQQQQLQQQQQQQLQQQQQLQQQQLQQQQQQQQLQQQQQQQLQQQQQQLQQQQ 3959
Query: 184 LKKQELARGQMRSQQTSGLSE 204
++Q+ + Q + QQ L++
Sbjct: 3960 QQQQQQFQQQQQQQQMGLLNQ 3980
Score = 32.7 bits (73), Expect = 0.66
Identities = 18/74 (24%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 132 EYQEYLQSKNKYKAEILKKLEHQRLIEAERKRIAQMRQQQLESEQFLFFEDQLKKQELAR 191
+ Q+ LQ + + + + L++ + Q+ ++ ++++ Q +QQQL+ +Q ++Q+
Sbjct: 3915 QQQQQLQQQQQLQQQQLQQQQQQQQLQQQQQQQLQQQQQQLQQQQ--------QQQQQQF 3966
Query: 192 GQMRSQQTSGLSEQ 205
Q + QQ GL Q
Sbjct: 3967 QQQQQQQQMGLLNQ 3980
Score = 28.9 bits (63), Expect = 9.6
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 87 EKLPNHRDYQQCAVPEKQDIMKKLKEIAFPRTDELKNDLLKKYNVEYQEYLQSKNKYKAE 146
E++ HR ++ +++ K +E FP D K L+ + + Q+ L K
Sbjct: 3530 EQIGVHRKSRKALCAKQRTAKKAGRE--FPEADAEKLKLVTEQQSKIQKQLDQVRK---- 3583
Query: 147 ILKKLEHQRLIEAERKRIAQMRQQQLESEQ 176
++ EH L+ R + Q +QQQ + +Q
Sbjct: 3584 --QQKEHTNLMAEYRNKQQQQQQQQQQQQQ 3611
>gi|53729363 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 35.4 bits (80), Expect = 0.10
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 102 EKQDIMKKLKEIAFPRTDEL----KNDLLKKYNVEYQEYLQSKNKYKAEILKKL-EHQRL 156
EK+ K L+++ F R EL LL++ + + E LQ+ + ++ + + L EHQR
Sbjct: 257 EKRKEQKMLEKLEFERRLELGQREHTQLLQQSSSQKDEILQTVKEEQSRLEQGLSEHQRH 316
Query: 157 IEAERKRIAQMRQQQLESEQFLFFEDQLKKQELARGQMRSQQTSGL-SEQIDGSALSCFS 215
+ AER+R +++Q ++EQ + Q Q+ R + S+ L +E+I L +
Sbjct: 317 LNAERQR---LQEQLKQTEQNISSRIQKLLQDNQRQKKSSEILKSLENERIRMEQLMSIT 373
Query: 216 THQNNSL 222
+ SL
Sbjct: 374 QEETESL 380
>gi|53729361 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 35.4 bits (80), Expect = 0.10
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 102 EKQDIMKKLKEIAFPRTDEL----KNDLLKKYNVEYQEYLQSKNKYKAEILKKL-EHQRL 156
EK+ K L+++ F R EL LL++ + + E LQ+ + ++ + + L EHQR
Sbjct: 257 EKRKEQKMLEKLEFERRLELGQREHTQLLQQSSSQKDEILQTVKEEQSRLEQGLSEHQRH 316
Query: 157 IEAERKRIAQMRQQQLESEQFLFFEDQLKKQELARGQMRSQQTSGL-SEQIDGSALSCFS 215
+ AER+R +++Q ++EQ + Q Q+ R + S+ L +E+I L +
Sbjct: 317 LNAERQR---LQEQLKQTEQNISSRIQKLLQDNQRQKKSSEILKSLENERIRMEQLMSIT 373
Query: 216 THQNNSL 222
+ SL
Sbjct: 374 QEETESL 380
>gi|53729359 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 35.4 bits (80), Expect = 0.10
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 102 EKQDIMKKLKEIAFPRTDEL----KNDLLKKYNVEYQEYLQSKNKYKAEILKKL-EHQRL 156
EK+ K L+++ F R EL LL++ + + E LQ+ + ++ + + L EHQR
Sbjct: 257 EKRKEQKMLEKLEFERRLELGQREHTQLLQQSSSQKDEILQTVKEEQSRLEQGLSEHQRH 316
Query: 157 IEAERKRIAQMRQQQLESEQFLFFEDQLKKQELARGQMRSQQTSGL-SEQIDGSALSCFS 215
+ AER+R +++Q ++EQ + Q Q+ R + S+ L +E+I L +
Sbjct: 317 LNAERQR---LQEQLKQTEQNISSRIQKLLQDNQRQKKSSEILKSLENERIRMEQLMSIT 373
Query: 216 THQNNSL 222
+ SL
Sbjct: 374 QEETESL 380
>gi|102467235 inner centromere protein antigens 135/155kDa isoform 1
[Homo sapiens]
Length = 918
Score = 35.4 bits (80), Expect = 0.10
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 21/121 (17%)
Query: 102 EKQDIMKKLKEIAFPRTDELKNDLLKKYNVE-----YQEYLQSKNKYKAEILKKL-EHQR 155
+K+ KK++E+ R E + L+ E +QE LQ K + + E L+K E +R
Sbjct: 624 KKKAAAKKMEEVEARRKQEEEARRLRWLQQEEEERRHQELLQKKKEEEQERLRKAAEAKR 683
Query: 156 LIEA-----------ERKRIAQMRQQQLESEQFLFFEDQLKKQELARGQMRSQQTSGLSE 204
L E E++R Q R++Q EQ E QL +QE R Q R Q L E
Sbjct: 684 LAEQREQERREQERREQERREQERREQERREQ----ERQLAEQERRREQERLQAERELQE 739
Query: 205 Q 205
+
Sbjct: 740 R 740
>gi|102467242 inner centromere protein antigens 135/155kDa isoform 2
[Homo sapiens]
Length = 914
Score = 35.4 bits (80), Expect = 0.10
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 21/121 (17%)
Query: 102 EKQDIMKKLKEIAFPRTDELKNDLLKKYNVE-----YQEYLQSKNKYKAEILKKL-EHQR 155
+K+ KK++E+ R E + L+ E +QE LQ K + + E L+K E +R
Sbjct: 620 KKKAAAKKMEEVEARRKQEEEARRLRWLQQEEEERRHQELLQKKKEEEQERLRKAAEAKR 679
Query: 156 LIEA-----------ERKRIAQMRQQQLESEQFLFFEDQLKKQELARGQMRSQQTSGLSE 204
L E E++R Q R++Q EQ E QL +QE R Q R Q L E
Sbjct: 680 LAEQREQERREQERREQERREQERREQERREQ----ERQLAEQERRREQERLQAERELQE 735
Query: 205 Q 205
+
Sbjct: 736 R 736
>gi|31542699 MPN domain containing isoform 1 [Homo sapiens]
Length = 471
Score = 35.0 bits (79), Expect = 0.13
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 329 EELFNVQDQHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLML-------PEAIAIVCSP 381
EE++ L +GW H+HP A S D+ YQL L +A++CSP
Sbjct: 331 EEIYQSLFLRGLSLVGWYHSHPHSPALPSLQDIDAQMDYQLRLQGSSNGFQPCLALLCSP 390
>gi|169218106 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 436
Score = 35.0 bits (79), Expect = 0.13
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 121 LKNDLLKKYNVEYQEYLQSKNKYKAEI-LKKLEHQRLIEAERKRIAQMRQQQLESEQFLF 179
+ N+ LK+ N E QE LQ K+EI L E +R +E ++ + Q Q + + Q
Sbjct: 4 ITNEELKEKNAELQEELQLVETEKSEIQLHIKELKRKLETDKIPLPQEGQVREQEGQVRE 63
Query: 180 FEDQLKKQELARGQMRSQQ 198
E Q+++QE GQ+R Q+
Sbjct: 64 QEGQVREQE---GQVREQE 79
Score = 32.0 bits (71), Expect = 1.1
Identities = 20/102 (19%), Positives = 51/102 (50%)
Query: 96 QQCAVPEKQDIMKKLKEIAFPRTDELKNDLLKKYNVEYQEYLQSKNKYKAEILKKLEHQR 155
Q+ + E+++ M++ +E + +++ + + + Q + Q + +K E + ++
Sbjct: 301 QEEQMREQEEQMREQEEQMREQEEQMGKQEEQMWEQKEQMWEQKEQMWKQEEQMGEQEEQ 360
Query: 156 LIEAERKRIAQMRQQQLESEQFLFFEDQLKKQELARGQMRSQ 197
+ + E + Q Q + + EQ E+Q++KQE G+ + Q
Sbjct: 361 MQKQEEQVRKQEEQMRKQEEQMRKQEEQMRKQEEQMGEQKEQ 402
Score = 29.6 bits (65), Expect = 5.6
Identities = 22/103 (21%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 96 QQCAVPEKQDIMKKLKEIAFPRTDELKNDLLKKYNVEYQEYLQSKNKYKAEILKKLEHQR 155
Q+ + E+++ M++ +E + ++++ + E Q + Q + ++ + + ++
Sbjct: 294 QEEQMREQEEQMREQEEQMREQEEQMREQEEQMGKQEEQMWEQKEQMWEQKEQMWKQEEQ 353
Query: 156 LIEAERKRIAQMRQQQLESEQFLFFEDQLKKQELARGQMRSQQ 198
+ E E + Q Q + + EQ E+Q++KQE QMR Q+
Sbjct: 354 MGEQEEQMQKQEEQVRKQEEQMRKQEEQMRKQE---EQMRKQE 393
Score = 28.9 bits (63), Expect = 9.6
Identities = 19/96 (19%), Positives = 45/96 (46%)
Query: 102 EKQDIMKKLKEIAFPRTDELKNDLLKKYNVEYQEYLQSKNKYKAEILKKLEHQRLIEAER 161
+KQ+ + +E + +E + ++ + ++ L+ K + + E + +++ E E
Sbjct: 244 QKQEEQVQKQEEQMRKQEEQMREQEEQMREQEEQMLKQKEQTEQEEQTGEQEEQMREQEE 303
Query: 162 KRIAQMRQQQLESEQFLFFEDQLKKQELARGQMRSQ 197
+ Q Q + + EQ E+Q+ KQE + + Q
Sbjct: 304 QMREQEEQMREQEEQMREQEEQMGKQEEQMWEQKEQ 339
>gi|64762484 BRCA1/BRCA2-containing complex, subunit 3 isoform 2
[Homo sapiens]
Length = 291
Score = 35.0 bits (79), Expect = 0.13
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 343 LGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIV--CSPKHKDTGIFRLTNAGMLEVS 400
+GW H+HP T + S VD+ T YQ+M + ++ C + K+T R+ +
Sbjct: 118 VGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQ 177
Query: 401 ACKKKGF 407
A K +
Sbjct: 178 AQKSSEY 184
>gi|51317384 GLE1 RNA export mediator homolog isoform 1 [Homo
sapiens]
Length = 698
Score = 35.0 bits (79), Expect = 0.13
Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 19/93 (20%)
Query: 133 YQEYLQSKNKYKAEILKKLEHQRLIEAERKRIAQMRQQQLESEQFLFFEDQLKKQELARG 192
+QE L+++++++A+IL + +L EAE++R+ Q Q++L E E Q++ + L
Sbjct: 201 HQEKLKAEHRHRAKIL----NLKLREAEQQRVKQAEQERLRKE-----EGQIRLRALYAL 251
Query: 193 QMRSQQTSGLSEQIDGSALSCFSTHQNNSLLNV 225
Q Q LS+Q+D S Q+ +LL V
Sbjct: 252 QEEMLQ---LSQQLDAS-------EQHKALLKV 274
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,026,256
Number of Sequences: 37866
Number of extensions: 684739
Number of successful extensions: 3019
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 172
Number of HSP's that attempted gapping in prelim test: 2678
Number of HSP's gapped (non-prelim): 463
length of query: 436
length of database: 18,247,518
effective HSP length: 105
effective length of query: 331
effective length of database: 14,271,588
effective search space: 4723895628
effective search space used: 4723895628
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.