Guide to the Human Genome
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Name: STAMBP Sequence: fasta or formatted (424aa) NCBI GI: 47132534
Description:

STAM binding protein

Referenced in:

Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt mRNA [424aa] STAM binding protein
alt mRNA [424aa] STAM binding protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         22           1
 C cysteine            2.4         10           1
 D aspartate           4.5         19           1
 E glutamate          10.1         43           3
 F phenylalanine       4.0         17           2
 G glycine             4.7         20           2
 H histidine           3.5         15           1
 I isoleucine          5.9         25           2
 K lysine              7.3         31           3
 L leucine             9.4         40           2
 M methionine          1.7          7           2
 N asparagine          2.6         11           1
 P proline             6.4         27           2
 Q glutamine           5.7         24           3
 R arginine            5.0         21           2
 S serine              6.8         29           2
 T threonine           5.7         24           2
 V valine              6.6         28           3
 W tryptophan          0.2          1           1
 Y tyrosine            2.4         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   STAM binding protein 
STAMBP                1.000   STAM binding protein 
STAMBP                1.000   STAM binding protein 
STAMBPL1              0.559   STAM binding protein-like 1 
CSPP1                 0.027   centrosome spindle pole associated protein 1 isofor...
CSPP1                 0.027   centrosome spindle pole associated protein 1 isofor...
CALD1                 0.025   caldesmon 1 isoform 1 
USP8                  0.024   ubiquitin specific peptidase 8 
USP8                  0.024   ubiquitin specific peptidase 8 
USP8                  0.024   ubiquitin specific peptidase 8 
MAP4K4                0.024   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.024   mitogen-activated protein kinase kinase kinase kinas...
LOC283685             0.023   PREDICTED: golgi autoantigen, golgin subfamily a-li...
MYO5A                 0.023   myosin VA isoform 2 
MYO5A                 0.023   myosin VA isoform 1 
MAP4K4                0.023   mitogen-activated protein kinase kinase kinase kinas...
MAP1B                 0.023   microtubule-associated protein 1B 
MNS1                  0.023   meiosis-specific nuclear structural 1 
LOC283767             0.022   golgi autoantigen, golgin subfamily a-like 
BAT2D1                0.022   HBxAg transactivated protein 2 
TCHH                  0.022   trichohyalin 
ZRSR2                 0.022   U2 small nuclear RNA auxiliary factor 1-like 2 
LOC440243             0.019   PREDICTED: Putative golgin subfamily A member 6-lik...
MYH11                 0.019   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.019   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.019   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.019   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
BAZ1A                 0.019   bromodomain adjacent to zinc finger domain, 1A isofo...
BAZ1A                 0.019   bromodomain adjacent to zinc finger domain, 1A isofo...
LOC727832             0.019   golgi autoantigen, golgin subfamily a-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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