Guide to the Human Genome
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Name: C9orf84 Sequence: fasta or formatted (1444aa) NCBI GI: 124028515
Description:

hypothetical protein LOC158401 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {1405aa} hypothetical protein LOC158401 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5         51           3
 C cysteine            2.6         37           1
 D aspartate           5.3         76           2
 E glutamate           9.0        130           3
 F phenylalanine       4.8         69           2
 G glycine             3.0         44           2
 H histidine           2.4         34           2
 I isoleucine          6.5         94           3
 K lysine              7.1        102           2
 L leucine            12.2        176           2
 M methionine          1.5         22           2
 N asparagine          5.1         73           2
 P proline             4.5         65           2
 Q glutamine           5.1         74           3
 R arginine            3.0         44           2
 S serine             10.1        146           3
 T threonine           5.7         82           2
 V valine              4.8         69           3
 W tryptophan          1.2         17           2
 Y tyrosine            2.7         39           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC158401 isoform 1 
C9orf84               0.941   hypothetical protein LOC158401 isoform 2 
VAV2                  0.004   vav 2 guanine nucleotide exchange factor isoform 1 ...
VAV2                  0.004   vav 2 guanine nucleotide exchange factor isoform 2 [...
CASP8AP2              0.004   caspase 8 associated protein 2 
CASP8AP2              0.004   caspase 8 associated protein 2 
CASP8AP2              0.004   caspase 8 associated protein 2 
TEX15                 0.004   testis expressed 15 
KIF5C                 0.003   kinesin family member 5C 
C2orf67               0.003   hypothetical protein LOC151050 
WWC3                  0.003   WWC family member 3 
LOC126987             0.003   PREDICTED: similar to hCG2040319 
LOC126987             0.003   PREDICTED: similar to hCG2040319 
LOC126987             0.003   PREDICTED: similar to hCG2040319 
TRIP11                0.003   thyroid hormone receptor interactor 11 
TNNI3K                0.003   TNNI3 interacting kinase isoform b 
TNNI3K                0.003   TNNI3 interacting kinase isoform a 
ZNF281                0.003   zinc finger protein 281 
ARAP2                 0.002   ArfGAP with RhoGAP domain, ankyrin repeat and PH dom...
KIAA0753              0.002   hypothetical protein LOC9851 
ANKRD30A              0.002   ankyrin repeat domain 30A 
CLCA1                 0.002   chloride channel accessory 1 precursor 
MGEA5                 0.002   meningioma expressed antigen 5 (hyaluronidase) isof...
MGEA5                 0.002   meningioma expressed antigen 5 (hyaluronidase) isofo...
GCC2                  0.002   GRIP and coiled-coil domain-containing 2 
TRAK1                 0.002   OGT(O-Glc-NAc transferase)-interacting protein 106 ...
ANK3                  0.002   ankyrin 3 isoform 1 
BRCA2                 0.002   breast cancer 2, early onset 
NID1                  0.002   nidogen 1 precursor 
ZCCHC6                0.002   zinc finger, CCHC domain containing 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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