Guide to the Human Genome
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Name: ODF4 Sequence: fasta or formatted (257aa) NCBI GI: 171184433
Description:

outer dense fiber of sperm tails 4

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9         10           1
 C cysteine            1.6          4           1
 D aspartate           3.5          9           1
 E glutamate           5.8         15           2
 F phenylalanine       6.2         16           1
 G glycine             6.6         17           1
 H histidine           3.1          8           1
 I isoleucine          5.8         15           1
 K lysine              3.1          8           2
 L leucine            11.3         29           3
 M methionine          1.9          5           1
 N asparagine          3.1          8           1
 P proline             4.3         11           1
 Q glutamine           4.3         11           1
 R arginine            5.8         15           1
 S serine             13.6         35           3
 T threonine           4.7         12           1
 V valine              5.4         14           2
 W tryptophan          3.5          9           1
 Y tyrosine            2.3          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   outer dense fiber of sperm tails 4 
TMEM202               0.012   transmembrane protein 202 
ASAP3                 0.010   ArfGAP with SH3 domain, ankyrin repeat and PH domai...
ASAP3                 0.010   ArfGAP with SH3 domain, ankyrin repeat and PH domain...
DCAF5                 0.008   WD repeat domain 22 
GPRIN1                0.008   G protein-regulated inducer of neurite outgrowth 1 ...
IQCC                  0.006   IQ motif containing C isoform 1 
IQCC                  0.006   IQ motif containing C isoform 2 
SLC26A11              0.006   solute carrier family 26, member 11 
RPGR                  0.006   retinitis pigmentosa GTPase regulator isoform C [Hom...
ZNF518B               0.006   zinc finger protein 518B 
PEX5L                 0.006   peroxisomal biogenesis factor 5-like 
C1orf114              0.006   hypothetical protein LOC57821 
SCN10A                0.006   sodium channel, voltage-gated, type X, alpha 
RASGEF1A              0.006   RasGEF domain family, member 1A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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