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Search of human proteins with 32307140
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|32307140 phosphatidylinositol transfer protein, cytoplasmic
1 isoform a [Homo sapiens]
(332 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|32307140 phosphatidylinositol transfer protein, cytoplasmic 1... 691 0.0
gi|32307142 phosphatidylinositol transfer protein, cytoplasmic 1... 511 e-145
gi|24308237 phosphatidylinositol transfer protein, membrane-asso... 237 9e-63
gi|195927017 phosphatidylinositol transfer protein, membrane-ass... 223 1e-58
gi|195927015 phosphatidylinositol transfer protein, membrane-ass... 223 1e-58
gi|5453908 phosphatidylinositol transfer protein, alpha [Homo sa... 203 2e-52
gi|6912594 phosphatidylinositol transfer protein, beta [Homo sap... 184 7e-47
gi|163965366 nascent polypeptide-associated complex alpha subuni... 39 0.006
gi|239508790 PREDICTED: hypothetical protein, partial [Homo sapi... 36 0.042
gi|29826294 golgi reassembly stacking protein 2 [Homo sapiens] 36 0.042
gi|222418647 mucin 7, secreted precursor [Homo sapiens] 35 0.093
gi|222418649 mucin 7, secreted precursor [Homo sapiens] 35 0.093
gi|222418645 mucin 7, secreted precursor [Homo sapiens] 35 0.093
gi|242117953 SH3 domain-containing protein C1orf113 isoform 1 [H... 34 0.16
gi|242117948 SH3 domain-containing protein C1orf113 isoform 2 [H... 34 0.16
gi|116284392 mucin 2 precursor [Homo sapiens] 34 0.16
gi|14602439 Williams Beuren syndrome chromosome region 14 isofor... 34 0.21
gi|14602437 Williams Beuren syndrome chromosome region 14 isofor... 34 0.21
gi|14602435 Williams Beuren syndrome chromosome region 14 isofor... 34 0.21
gi|14602433 Williams Beuren syndrome chromosome region 14 isofor... 34 0.21
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens] 34 0.21
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 33 0.35
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 33 0.35
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 33 0.35
gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens] 33 0.46
gi|91208420 bassoon protein [Homo sapiens] 33 0.46
gi|145275193 specifically androgen-regulated protein isoform 2 [... 33 0.46
gi|145275189 specifically androgen-regulated protein isoform 1 [... 33 0.46
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 32 0.60
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 32 0.60
>gi|32307140 phosphatidylinositol transfer protein, cytoplasmic 1
isoform a [Homo sapiens]
Length = 332
Score = 691 bits (1783), Expect = 0.0
Identities = 332/332 (100%), Positives = 332/332 (100%)
Query: 1 MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEK 60
MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEK
Sbjct: 1 MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEK 60
Query: 61 RVYLNSKLPSWARAVVPKIFYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKGSN 120
RVYLNSKLPSWARAVVPKIFYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKGSN
Sbjct: 61 RVYLNSKLPSWARAVVPKIFYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKGSN 120
Query: 121 DTIFDNEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSHQPI 180
DTIFDNEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSHQPI
Sbjct: 121 DTIFDNEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSHQPI 180
Query: 181 MCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTMDEVREFERA 240
MCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTMDEVREFERA
Sbjct: 181 MCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTMDEVREFERA 240
Query: 241 TQEATNKKIGIFPPAISISSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVPKDRPRKKSA 300
TQEATNKKIGIFPPAISISSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVPKDRPRKKSA
Sbjct: 241 TQEATNKKIGIFPPAISISSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVPKDRPRKKSA 300
Query: 301 PETLTLPDPEKKATLNLPGMHSSDKPCRPKSE 332
PETLTLPDPEKKATLNLPGMHSSDKPCRPKSE
Sbjct: 301 PETLTLPDPEKKATLNLPGMHSSDKPCRPKSE 332
>gi|32307142 phosphatidylinositol transfer protein, cytoplasmic 1
isoform b [Homo sapiens]
Length = 268
Score = 511 bits (1315), Expect = e-145
Identities = 240/249 (96%), Positives = 244/249 (97%)
Query: 1 MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEK 60
MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEK
Sbjct: 1 MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEK 60
Query: 61 RVYLNSKLPSWARAVVPKIFYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKGSN 120
RVYLNSKLPSWARAVVPKIFYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKGSN
Sbjct: 61 RVYLNSKLPSWARAVVPKIFYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKGSN 120
Query: 121 DTIFDNEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSHQPI 180
DTIFDNEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSHQPI
Sbjct: 121 DTIFDNEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSHQPI 180
Query: 181 MCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTMDEVREFERA 240
MCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTMD+VRE+E+
Sbjct: 181 MCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTMDDVREYEKN 240
Query: 241 TQEATNKKI 249
E TN K+
Sbjct: 241 MHEQTNIKV 249
>gi|24308237 phosphatidylinositol transfer protein,
membrane-associated 2 [Homo sapiens]
Length = 1349
Score = 237 bits (605), Expect = 9e-63
Identities = 118/291 (40%), Positives = 182/291 (62%), Gaps = 8/291 (2%)
Query: 1 MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQS-DRGEGVEVVQNEPFEDPHHGNGQFTE 59
M++KEYRI +P+TV+EY+I QLYMI K S ++ G GVE+++N P+ D G+GQ+T
Sbjct: 1 MIIKEYRIPLPMTVEEYRIAQLYMIQKKSRNETYGEGSGVEILENRPYTDGPGGSGQYTH 60
Query: 60 KRVYLNSKLPSWARAVVPKI-FYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKG 118
K ++ +PSW R+++PK V E++WN YPYT T +TC F+ KFSI IET Y+ + G
Sbjct: 61 KVYHVGMHIPSWFRSILPKAALRVVEESWNAYPYTRTRFTCPFVEKFSIDIETFYKTDAG 120
Query: 119 SNDTIFD-NEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSH 177
N +F+ + + + + FIDI D +P YK EDPK F+S KT RG L E W + +
Sbjct: 121 ENPDVFNLSPVEKNQLTIDFIDIVKDPVPHNEYKTEEDPKLFQSTKTQRGPLSENWIEEY 180
Query: 178 Q----PIMCSYKLVTVKFEVWGLQTRVEQFVHKV-VRDILLIGHRQAFAWVDEWYDMTMD 232
+ PIMC+YKL V+F WG+Q+++E+F+H +R +++ HRQA+ W DEWY ++M+
Sbjct: 181 KKQVFPIMCAYKLCKVEFRYWGMQSKIERFIHDTGLRRVMVRAHRQAWCWQDEWYGLSME 240
Query: 233 EVREFERATQEATNKKIGIFPPAISISSIPLLPSSVRSAPSSAPSTPLSTD 283
+RE E+ Q ++K+ F ++ + +V S P P S++
Sbjct: 241 NIRELEKEAQLMLSRKMAQFNEDGEEATELVKHEAVSDQTSGEPPEPSSSN 291
>gi|195927017 phosphatidylinositol transfer protein,
membrane-associated isoform b [Homo sapiens]
Length = 1243
Score = 223 bits (569), Expect = 1e-58
Identities = 121/294 (41%), Positives = 178/294 (60%), Gaps = 9/294 (3%)
Query: 1 MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQSD-RGEGVEVVQNEPFEDPHHGNGQFTE 59
ML+KEY I +P+++DEY++ QLYMI K S E+S G GVE++ N P+ D G+GQ+T
Sbjct: 1 MLIKEYHILLPMSLDEYQVAQLYMIQKKSREESSGEGSGVEILANRPYTDGPGGSGQYTH 60
Query: 60 KRVYLNSKLPSWARAVVPKI-FYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKG 118
K ++ S +P W RA++PK V E++WN YPYT T YTC F+ KFSI IET Y + G
Sbjct: 61 KVYHVGSHIPGWFRALLPKAALQVEEESWNAYPYTRTRYTCPFVEKFSIEIETYYLPDGG 120
Query: 119 SNDTIFD-NEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGW-RDS 176
+F+ + A+ +R + IDI D + YK EDP+ + S KTGRG L + W R +
Sbjct: 121 QQPNVFNLSGAERRQRILDTIDIVRDAVAPGEYKAEEDPRLYHSVKTGRGPLSDDWARTA 180
Query: 177 HQ--PIMCSYKLVTVKFEVWGLQTRVEQFVHKV-VRDILLIGHRQAFAWVDEWYDMTMDE 233
Q P+MC+YKL V+F WG+Q ++EQF+H V +R ++L HRQA+ W DEW +++M +
Sbjct: 181 AQTGPLMCAYKLCKVEFRYWGMQAKIEQFIHDVGLRRVMLRAHRQAWCWQDEWTELSMAD 240
Query: 234 VREFERATQEATNKKIGIFPPAI--SISSIPLLPSSVRSAPSSAPSTPLSTDAP 285
+R E T +++ S + P PS+ + +S TP +AP
Sbjct: 241 IRALEEETARMLAQRMAKCNTGSEGSEAQPPGKPSTEARSAASNTGTPDGPEAP 294
>gi|195927015 phosphatidylinositol transfer protein,
membrane-associated isoform a [Homo sapiens]
Length = 1244
Score = 223 bits (569), Expect = 1e-58
Identities = 121/294 (41%), Positives = 178/294 (60%), Gaps = 9/294 (3%)
Query: 1 MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQSD-RGEGVEVVQNEPFEDPHHGNGQFTE 59
ML+KEY I +P+++DEY++ QLYMI K S E+S G GVE++ N P+ D G+GQ+T
Sbjct: 1 MLIKEYHILLPMSLDEYQVAQLYMIQKKSREESSGEGSGVEILANRPYTDGPGGSGQYTH 60
Query: 60 KRVYLNSKLPSWARAVVPKI-FYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKG 118
K ++ S +P W RA++PK V E++WN YPYT T YTC F+ KFSI IET Y + G
Sbjct: 61 KVYHVGSHIPGWFRALLPKAALQVEEESWNAYPYTRTRYTCPFVEKFSIEIETYYLPDGG 120
Query: 119 SNDTIFD-NEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGW-RDS 176
+F+ + A+ +R + IDI D + YK EDP+ + S KTGRG L + W R +
Sbjct: 121 QQPNVFNLSGAERRQRILDTIDIVRDAVAPGEYKAEEDPRLYHSVKTGRGPLSDDWARTA 180
Query: 177 HQ--PIMCSYKLVTVKFEVWGLQTRVEQFVHKV-VRDILLIGHRQAFAWVDEWYDMTMDE 233
Q P+MC+YKL V+F WG+Q ++EQF+H V +R ++L HRQA+ W DEW +++M +
Sbjct: 181 AQTGPLMCAYKLCKVEFRYWGMQAKIEQFIHDVGLRRVMLRAHRQAWCWQDEWTELSMAD 240
Query: 234 VREFERATQEATNKKIGIFPPAI--SISSIPLLPSSVRSAPSSAPSTPLSTDAP 285
+R E T +++ S + P PS+ + +S TP +AP
Sbjct: 241 IRALEEETARMLAQRMAKCNTGSEGSEAQPPGKPSTEARSAASNTGTPDGPEAP 294
>gi|5453908 phosphatidylinositol transfer protein, alpha [Homo
sapiens]
Length = 270
Score = 203 bits (516), Expect = 2e-52
Identities = 108/251 (43%), Positives = 157/251 (62%), Gaps = 10/251 (3%)
Query: 1 MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEK 60
+LLKEYR+ +P++VDEY++GQLY +++ S ++ GEGVEV+ NEP+E GQ+T K
Sbjct: 2 VLLKEYRVILPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEKDGE-KGQYTHK 60
Query: 61 RVYLNSKLPSWARAVVPK-IFYVTEKAWNYYPYTITEYTCSFLPK-FSIHIETKYEDNKG 118
+L SK+P++ R + P+ + EKAWN YPY T T ++ + F I IET ++ + G
Sbjct: 61 IYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDLG 120
Query: 119 SNDTIFDNEAKDVER-EVCFIDIAC-DEIPERYYKESEDPKHFKSEKTGRGQLREGWRDS 176
+ + + E + + E +IDIA ++ + YK EDP FKS KTGRG L W+
Sbjct: 121 TQENVHKLEPEAWKHVEAVYIDIADRSQVLSKDYKAEEDPAKFKSIKTGRGPLGPNWKQE 180
Query: 177 -----HQPIMCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTM 231
P MC+YKLVTVKF+ WGLQ +VE F+HK R + HRQ F W+D+W D+TM
Sbjct: 181 LVNQKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQERRLFTNFHRQLFCWLDKWVDLTM 240
Query: 232 DEVREFERATQ 242
D++R E T+
Sbjct: 241 DDIRRMEEETK 251
>gi|6912594 phosphatidylinositol transfer protein, beta [Homo
sapiens]
Length = 271
Score = 184 bits (468), Expect = 7e-47
Identities = 103/256 (40%), Positives = 156/256 (60%), Gaps = 18/256 (7%)
Query: 1 MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEK 60
+L+KE+R+ +P +V EY++GQLY +++ S ++ GEG+EV++NEP+E GQ+T K
Sbjct: 2 VLIKEFRVVLPCSVQEYQVGQLYSVAEASKNETGGGEGIEVLKNEPYEKDGE-KGQYTHK 60
Query: 61 RVYLNSKLPSWARAVVPK---IFYVTEKAWNYYPYTITEYTCSFLPK-FSIHIETKYEDN 116
+L SK+P++ R + P+ +F+ EKAWN YPY T T ++ F I IET ++ +
Sbjct: 61 IYHLKSKVPAFVRMIAPEGSLVFH--EKAWNAYPYCRTIVTNEYMKDDFFIKIETWHKPD 118
Query: 117 KGSNDTIFD---NEAKDVEREVCFIDIAC-DEIPERYYKESEDPKHFKSEKTGRGQLREG 172
G+ + + N K VE + IDIA ++ YK EDP F+S KT RG L
Sbjct: 119 LGTLENVHGLDPNTWKTVE--IVHIDIADRSQVEPADYKADEDPALFQSVKTKRGPLGPN 176
Query: 173 WRDSHQ-----PIMCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWY 227
W+ P MC+YKLVT+KF+ WGLQ++VE F+ K + I HRQ F W+D+W
Sbjct: 177 WKKELANSPDCPQMCAYKLVTIKFKWWGLQSKVENFIQKQEKRIFTNFHRQLFCWIDKWI 236
Query: 228 DMTMDEVREFERATQE 243
D+TM+++R E TQ+
Sbjct: 237 DLTMEDIRRMEDETQK 252
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 38.9 bits (89), Expect = 0.006
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 244 ATNKKIGIFPPAISISSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVPKDRPRKKSAPET 303
AT K + PPA++ S+ P++ SAP P+TP S P +V P++ AP+
Sbjct: 1426 ATPSKGDLTPPAVTPVSLKKAPAT--SAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQ 1483
Query: 304 LTLPDPEKKA 313
+ KKA
Sbjct: 1484 VATSSSPKKA 1493
Score = 35.8 bits (81), Expect = 0.055
Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 18/102 (17%)
Query: 248 KIGIFPPAISISS------------IPLLPSS--VRSAPSSAPSTPLSTDAPEFLSVP-- 291
K + PPA+++ S P PSS S P+ PST +P+ L +P
Sbjct: 1545 KEALIPPAMTVPSPKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPA 1604
Query: 292 --KDRPRKKSAPETLTLPDPEKKATLNLPGMHSSDKPCRPKS 331
P++ P +T P PEK P + P P S
Sbjct: 1605 VTSPSPKEAPTPPAVTPPSPEKGPATPAPKGTPTSPPVTPSS 1646
Score = 33.9 bits (76), Expect = 0.21
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 242 QEATNKKIGIFPPAISISSIPLLPSSVRSAPSSAPSTPLSTD---APEFLSVPKD----- 293
Q AT+ P + P LP+ + S+P P+TP S AP + K
Sbjct: 1483 QVATSSSPKKAPATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPATL 1542
Query: 294 RPRKKSAPETLTLPDPEKKATLNLPGMHSSDKPCRPKSE 332
P++ P +T+P P+K + P + P P S+
Sbjct: 1543 APKEALIPPAMTVPSPKKTPAIPTP----KEAPATPSSK 1577
Score = 30.4 bits (67), Expect = 2.3
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 252 FPPA---ISISSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVPKDRPRKKSAPETLTLPD 308
F PA ++ P + V++AP ++PS ++ +PE P+ KKS E L +
Sbjct: 544 FSPAQAGLTTKKDPTVLPLVQAAPKNSPSFQSTSSSPEIPLSPEATLAKKSLGEPLPIGK 603
Query: 309 PEKKATLNLPGMHSS 323
P T L G++SS
Sbjct: 604 PASSMTSPL-GVNSS 617
Score = 29.3 bits (64), Expect = 5.1
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 15/75 (20%)
Query: 253 PPAISISSIPLLPSSVRSAPSSAP-----STPLSTDAPEFLSVPKDRPRKKSAPET--LT 305
PPA++ P S + +P++ P STP + P P P K AP T T
Sbjct: 1011 PPAVT-------PPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAAT 1063
Query: 306 LPDPE-KKATLNLPG 319
LP P+ AT +L G
Sbjct: 1064 LPSPKGGPATPSLKG 1078
>gi|239508790 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 490
Score = 36.2 bits (82), Expect = 0.042
Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 258 ISSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVPKDRPRKKSAPETLTLPDPEKKATLNL 317
+S +P LPS V S PS PS L +D P LS P +P + +P P L
Sbjct: 125 LSGVPSLPSDVSSPPSDVPS--LLSDVPSLLSGVPSPPSDVPSPPS-DVPSPPSDVPSLL 181
Query: 318 PGMHS--SDKPCRP 329
G+ S SD P P
Sbjct: 182 SGVPSPPSDVPSPP 195
Score = 31.2 bits (69), Expect = 1.3
Identities = 27/90 (30%), Positives = 34/90 (37%), Gaps = 15/90 (16%)
Query: 258 ISSIPLLPSSVRSAPSSAPS----TPLSTDAP----------EFLSVPKDRPRKKS-APE 302
+S +P PS V S PS PS PL +D P + S P D P S P
Sbjct: 181 LSGVPSPPSDVPSPPSDVPSPPSDVPLLSDVPSPPSDVPLLSDVPSPPSDVPSLPSDVPS 240
Query: 303 TLTLPDPEKKATLNLPGMHSSDKPCRPKSE 332
+P P L G+ S P S+
Sbjct: 241 LSGVPSPPSDVPSLLSGVPSPPSDISPPSD 270
Score = 30.0 bits (66), Expect = 3.0
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 258 ISSIPLLPSSVRSAPSSAPSTPLSTDAPEFLS-VPKDRPRKKSAPETLTLPDPEKKATLN 316
+S +P LPS V S S PS P +D P LS VP S P + L +
Sbjct: 275 LSDVPSLPSDVPSLLSGVPSPP--SDVPSLLSDVPSPPSDVPSPPSDIPLLSGVPSPPSD 332
Query: 317 LPGMHSSDKPCRP 329
+P SD P P
Sbjct: 333 VPS-PPSDVPSPP 344
Score = 28.9 bits (63), Expect = 6.7
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 258 ISSIPLLPSSVRSAPSSAPS----TPLSTDAPEFLSVPKDRPRKKSAPETLTLP 307
+S +P L S V S+PS PS P+ + P S+P P P TL P
Sbjct: 402 LSDVPSLLSGVPSSPSGVPSLPSGVPILSGVP---SLPSGVPSPSGVPITLWCP 452
Score = 28.5 bits (62), Expect = 8.7
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 258 ISSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVP 291
+S +P PS V S PS PS P +D P VP
Sbjct: 323 LSGVPSPPSDVPSPPSDVPSPP--SDVPLLSGVP 354
>gi|29826294 golgi reassembly stacking protein 2 [Homo sapiens]
Length = 452
Score = 36.2 bits (82), Expect = 0.042
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 242 QEATNKKIGIFPPAIS------ISSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVPKDRP 295
Q T I PPA+S + ++PLLP V + +S P +T P + +P P
Sbjct: 254 QSLTGLSISSTPPAVSSVLSTGVPTVPLLPPQVNQSLTSVPPMNPATTLPGLMPLPAGLP 313
Query: 296 RKKSAPETLTLPDPEKKATLNLPGMHSSDKPCRP 329
+ L LP P + LP + + P P
Sbjct: 314 NLPNL--NLNLPAPHIMPGVGLPELVNPGLPPLP 345
>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 35.0 bits (79), Expect = 0.093
Identities = 22/71 (30%), Positives = 29/71 (40%)
Query: 253 PPAISISSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVPKDRPRKKSAPETLTLPDPEKK 312
P ++ P PS+ AP S+ + P +T AP S P SAP T P
Sbjct: 160 PAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPP 219
Query: 313 ATLNLPGMHSS 323
AT P S+
Sbjct: 220 ATTPAPPSSSA 230
Score = 33.5 bits (75), Expect = 0.27
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 253 PPAISI----SSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVPKDRPRKKSAPETLTLPD 308
PP+ S ++ P PS+ AP S+ + P +T AP P SAP T
Sbjct: 179 PPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAP 238
Query: 309 PEKKATLNLPGMHSSDKP 326
P AT P + SS P
Sbjct: 239 PTPSATTPAP-LSSSAPP 255
Score = 31.2 bits (69), Expect = 1.3
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 253 PPAISI----SSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVPKDRPRKKSAPETLTLPD 308
PP+ S ++ P PS+ AP S+ + P +T P S P SAP T
Sbjct: 225 PPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAP 284
Query: 309 PEKKATLNLP 318
P AT P
Sbjct: 285 PTPSATTPAP 294
Score = 30.0 bits (66), Expect = 3.0
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 259 SSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVPKDRPRKKSAPETLT 305
+++P PS+ PSSA + P +T AP S P AP+ T
Sbjct: 258 TAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPSSPAPQETT 304
>gi|222418649 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 35.0 bits (79), Expect = 0.093
Identities = 22/71 (30%), Positives = 29/71 (40%)
Query: 253 PPAISISSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVPKDRPRKKSAPETLTLPDPEKK 312
P ++ P PS+ AP S+ + P +T AP S P SAP T P
Sbjct: 160 PAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPP 219
Query: 313 ATLNLPGMHSS 323
AT P S+
Sbjct: 220 ATTPAPPSSSA 230
Score = 33.5 bits (75), Expect = 0.27
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 253 PPAISI----SSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVPKDRPRKKSAPETLTLPD 308
PP+ S ++ P PS+ AP S+ + P +T AP P SAP T
Sbjct: 179 PPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAP 238
Query: 309 PEKKATLNLPGMHSSDKP 326
P AT P + SS P
Sbjct: 239 PTPSATTPAP-LSSSAPP 255
Score = 31.2 bits (69), Expect = 1.3
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 253 PPAISI----SSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVPKDRPRKKSAPETLTLPD 308
PP+ S ++ P PS+ AP S+ + P +T P S P SAP T
Sbjct: 225 PPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAP 284
Query: 309 PEKKATLNLP 318
P AT P
Sbjct: 285 PTPSATTPAP 294
Score = 30.0 bits (66), Expect = 3.0
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 259 SSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVPKDRPRKKSAPETLT 305
+++P PS+ PSSA + P +T AP S P AP+ T
Sbjct: 258 TAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPSSPAPQETT 304
>gi|222418645 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 35.0 bits (79), Expect = 0.093
Identities = 22/71 (30%), Positives = 29/71 (40%)
Query: 253 PPAISISSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVPKDRPRKKSAPETLTLPDPEKK 312
P ++ P PS+ AP S+ + P +T AP S P SAP T P
Sbjct: 160 PAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPP 219
Query: 313 ATLNLPGMHSS 323
AT P S+
Sbjct: 220 ATTPAPPSSSA 230
Score = 33.5 bits (75), Expect = 0.27
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 253 PPAISI----SSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVPKDRPRKKSAPETLTLPD 308
PP+ S ++ P PS+ AP S+ + P +T AP P SAP T
Sbjct: 179 PPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAP 238
Query: 309 PEKKATLNLPGMHSSDKP 326
P AT P + SS P
Sbjct: 239 PTPSATTPAP-LSSSAPP 255
Score = 31.2 bits (69), Expect = 1.3
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 253 PPAISI----SSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVPKDRPRKKSAPETLTLPD 308
PP+ S ++ P PS+ AP S+ + P +T P S P SAP T
Sbjct: 225 PPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAP 284
Query: 309 PEKKATLNLP 318
P AT P
Sbjct: 285 PTPSATTPAP 294
Score = 30.0 bits (66), Expect = 3.0
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 259 SSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVPKDRPRKKSAPETLT 305
+++P PS+ PSSA + P +T AP S P AP+ T
Sbjct: 258 TAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPSSPAPQETT 304
>gi|242117953 SH3 domain-containing protein C1orf113 isoform 1 [Homo
sapiens]
Length = 756
Score = 34.3 bits (77), Expect = 0.16
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 270 SAPSSAPST-----PLSTDAPEFLSVPKDRPRKKSAPETLTLPDPEKKATL----NLPGM 320
S+P APS P T PE P++ P K P +P PEK TL ++PG
Sbjct: 342 SSPVKAPSVKRTPMPDKTATPERPPAPENAPSSKKIPAPDKVPSPEKTLTLGDKASIPGN 401
Query: 321 HSSDK 325
+S K
Sbjct: 402 STSGK 406
>gi|242117948 SH3 domain-containing protein C1orf113 isoform 2 [Homo
sapiens]
Length = 645
Score = 34.3 bits (77), Expect = 0.16
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 270 SAPSSAPST-----PLSTDAPEFLSVPKDRPRKKSAPETLTLPDPEKKATL----NLPGM 320
S+P APS P T PE P++ P K P +P PEK TL ++PG
Sbjct: 231 SSPVKAPSVKRTPMPDKTATPERPPAPENAPSSKKIPAPDKVPSPEKTLTLGDKASIPGN 290
Query: 321 HSSDK 325
+S K
Sbjct: 291 STSGK 295
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 34.3 bits (77), Expect = 0.16
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 254 PAISISSIPLLPSSVRSAPS--SAPSTPLSTDA-PEFLSVPKDRPRKKSAPETLTLPDPE 310
P+ I++ P P++ + PS + PS+P++T P + P P + P T P P
Sbjct: 1681 PSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPPPTTMTTPSPTTTPSPP 1740
Query: 311 KKATLNLP 318
LP
Sbjct: 1741 TTTMTTLP 1748
Score = 31.6 bits (70), Expect = 1.0
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 254 PAISISSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVPKDRPRKKSAPETLTLPDPEKKA 313
P IS ++ P P++ S P++ PS P +T +P + P +P T T P +
Sbjct: 1456 PPISTTTTPP-PTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPT-TTPITPPAS 1513
Query: 314 TLNLPGMHSSDKP 326
T LP + P
Sbjct: 1514 TTTLPPTTTPSPP 1526
>gi|14602439 Williams Beuren syndrome chromosome region 14 isoform
delta [Homo sapiens]
Length = 831
Score = 33.9 bits (76), Expect = 0.21
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Query: 253 PPAISISSIPL---LPSSVRSAPSSAPST------PLSTDAPEF---LSVPKDRPRKKSA 300
PPA +S +P P + +S PS AP+ PL P F S+P+ +P S
Sbjct: 441 PPAPGVSPLPAPAAFPPTPQSVPSPAPTPFPIELLPLGYSEPAFGPCFSMPRGKPPAPSP 500
Query: 301 PETLTLPDPEKKATLNLPGMHSSDKPC 327
P AT + P S+ PC
Sbjct: 501 RGQKASPPTLAPATASPPTTAGSNNPC 527
>gi|14602437 Williams Beuren syndrome chromosome region 14 isoform
gamma [Homo sapiens]
Length = 850
Score = 33.9 bits (76), Expect = 0.21
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Query: 253 PPAISISSIPL---LPSSVRSAPSSAPST------PLSTDAPEF---LSVPKDRPRKKSA 300
PPA +S +P P + +S PS AP+ PL P F S+P+ +P S
Sbjct: 441 PPAPGVSPLPAPAAFPPTPQSVPSPAPTPFPIELLPLGYSEPAFGPCFSMPRGKPPAPSP 500
Query: 301 PETLTLPDPEKKATLNLPGMHSSDKPC 327
P AT + P S+ PC
Sbjct: 501 RGQKASPPTLAPATASPPTTAGSNNPC 527
>gi|14602435 Williams Beuren syndrome chromosome region 14 isoform
beta [Homo sapiens]
Length = 833
Score = 33.9 bits (76), Expect = 0.21
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Query: 253 PPAISISSIPL---LPSSVRSAPSSAPST------PLSTDAPEF---LSVPKDRPRKKSA 300
PPA +S +P P + +S PS AP+ PL P F S+P+ +P S
Sbjct: 441 PPAPGVSPLPAPAAFPPTPQSVPSPAPTPFPIELLPLGYSEPAFGPCFSMPRGKPPAPSP 500
Query: 301 PETLTLPDPEKKATLNLPGMHSSDKPC 327
P AT + P S+ PC
Sbjct: 501 RGQKASPPTLAPATASPPTTAGSNNPC 527
>gi|14602433 Williams Beuren syndrome chromosome region 14 isoform
alpha [Homo sapiens]
Length = 852
Score = 33.9 bits (76), Expect = 0.21
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Query: 253 PPAISISSIPL---LPSSVRSAPSSAPST------PLSTDAPEF---LSVPKDRPRKKSA 300
PPA +S +P P + +S PS AP+ PL P F S+P+ +P S
Sbjct: 441 PPAPGVSPLPAPAAFPPTPQSVPSPAPTPFPIELLPLGYSEPAFGPCFSMPRGKPPAPSP 500
Query: 301 PETLTLPDPEKKATLNLPGMHSSDKPC 327
P AT + P S+ PC
Sbjct: 501 RGQKASPPTLAPATASPPTTAGSNNPC 527
>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
Length = 2217
Score = 33.9 bits (76), Expect = 0.21
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 258 ISSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVPKDRPRKKSAPETLTLPDP 309
++S LL + S P AP PL+ +P ++P+D +AP T T+P+P
Sbjct: 1362 LASQQLLSQAGPSNPPGAPPAPLAPSSPPVTALPQD----GAAPATSTMPEP 1409
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 33.1 bits (74), Expect = 0.35
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 253 PPAISISSIPLLPSSVRSAPSSAPSTP-LSTDAPEFLSVPKDRPRKKSAPETLTLPDPEK 311
PPA++ + LPS S P AP +P S + P P +AP P P
Sbjct: 520 PPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPA 579
Query: 312 KATLNLP 318
TL P
Sbjct: 580 SPTLQAP 586
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 33.1 bits (74), Expect = 0.35
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 253 PPAISISSIPLLPSSVRSAPSSAPSTP-LSTDAPEFLSVPKDRPRKKSAPETLTLPDPEK 311
PPA++ + LPS S P AP +P S + P P +AP P P
Sbjct: 789 PPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPA 848
Query: 312 KATLNLP 318
TL P
Sbjct: 849 SPTLQAP 855
Score = 30.0 bits (66), Expect = 3.0
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 253 PPAISISSIPLL------PSSVRSAPSSAPSTPLSTDAPE----FLSVPKDRPRKKSAPE 302
PP + +S PL P P AP +PL+T PE + P P ++P
Sbjct: 543 PPPLQTASAPLTTPHLETPPCPAPCPLQAPPSPLTTPPPETPSSIATPPPQAPPALASPP 602
Query: 303 TLTLPDP 309
LP P
Sbjct: 603 LQGLPSP 609
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 33.1 bits (74), Expect = 0.35
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 253 PPAISISSIPLLPSSVRSAPSSAPSTP-LSTDAPEFLSVPKDRPRKKSAPETLTLPDPEK 311
PPA++ + LPS S P AP +P S + P P +AP P P
Sbjct: 481 PPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPA 540
Query: 312 KATLNLP 318
TL P
Sbjct: 541 SPTLQAP 547
>gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens]
Length = 2089
Score = 32.7 bits (73), Expect = 0.46
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 15/77 (19%)
Query: 253 PPAISISSIPLLPS-------SVRSAPSSAPSTPLSTDAPEFLSVPKDRPRKKSA----P 301
PP +S PLLPS + + AP PLS++ F PK R RK S P
Sbjct: 1064 PPLLS----PLLPSIKPTVRKTRQDGSQEAPEAPLSSELEPFHPKPKIRTRKSSRMTPFP 1119
Query: 302 ETLTLPDPEKKATLNLP 318
T P+P + P
Sbjct: 1120 ATSAAPEPHPSTSTAQP 1136
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 32.7 bits (73), Expect = 0.46
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 252 FPPAISISSIPLLPSSVRSAPSS--APSTPLSTDAPEFLSVPKDRPRKKSAPETLTLPDP 309
FPP S + P LP+ P+ A TP+ T VP D P +L D
Sbjct: 3094 FPPGASYPAEPGLPNQQAFRPTGHYAGQTPMPTTQSTLFPVPADSRAPLQKPRQTSLADL 3153
Query: 310 EKKATLN 316
E+K N
Sbjct: 3154 EQKVPTN 3160
>gi|145275193 specifically androgen-regulated protein isoform 2
[Homo sapiens]
Length = 355
Score = 32.7 bits (73), Expect = 0.46
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 254 PAISISSIPLLPSSVRSAPSSAPST-----PLSTDAPEFL----SVPKDRPRKKSAPETL 304
PA + ++IP ++ AP+ AP P+ + AP + S+P P+ A L
Sbjct: 150 PAQASAAIPAAGKALAQAPAPAPGPAQGPLPMKSPAPGNVAASKSMPISIPKAPRANSAL 209
Query: 305 TLPDPEKKATL---NLPGM 320
T P PE TL N PG+
Sbjct: 210 TPPKPESGLTLQESNTPGL 228
>gi|145275189 specifically androgen-regulated protein isoform 1
[Homo sapiens]
Length = 601
Score = 32.7 bits (73), Expect = 0.46
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 254 PAISISSIPLLPSSVRSAPSSAPST-----PLSTDAPEFL----SVPKDRPRKKSAPETL 304
PA + ++IP ++ AP+ AP P+ + AP + S+P P+ A L
Sbjct: 396 PAQASAAIPAAGKALAQAPAPAPGPAQGPLPMKSPAPGNVAASKSMPISIPKAPRANSAL 455
Query: 305 TLPDPEKKATL---NLPGM 320
T P PE TL N PG+
Sbjct: 456 TPPKPESGLTLQESNTPGL 474
>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 32.3 bits (72), Expect = 0.60
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 225 EWYDMTMDEVREFERATQEATNKKIGIFPPAISIS---SIPLLPSS-----VRSAPSSAP 276
+W ++ D V F R T + ++ + P ++++ S PL P++ + AP P
Sbjct: 67 QWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAVAVAVSPPLEPAAESLDGLEEAPEQLP 126
Query: 277 STPLSTDAPEFLSVPKDRPRKKSAPETLTLP 307
S P+ A VP P AP + P
Sbjct: 127 SVPVPAPASTPPPVPVLAPAPAPAPAPVAAP 157
>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 32.3 bits (72), Expect = 0.60
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 225 EWYDMTMDEVREFERATQEATNKKIGIFPPAISIS---SIPLLPSS-----VRSAPSSAP 276
+W ++ D V F R T + ++ + P ++++ S PL P++ + AP P
Sbjct: 67 QWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAVAVAVSPPLEPAAESLDGLEEAPEQLP 126
Query: 277 STPLSTDAPEFLSVPKDRPRKKSAPETLTLP 307
S P+ A VP P AP + P
Sbjct: 127 SVPVPAPASTPPPVPVLAPAPAPAPAPVAAP 157
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,174,900
Number of Sequences: 37866
Number of extensions: 702117
Number of successful extensions: 3536
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 3256
Number of HSP's gapped (non-prelim): 338
length of query: 332
length of database: 18,247,518
effective HSP length: 103
effective length of query: 229
effective length of database: 14,347,320
effective search space: 3285536280
effective search space used: 3285536280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.