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Search of human proteins with 31657127
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31657127 Hermansky-Pudlak syndrome 5 isoform b [Homo
sapiens]
(1015 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31657123 Hermansky-Pudlak syndrome 5 isoform a [Homo sapiens] 2039 0.0
gi|31657125 Hermansky-Pudlak syndrome 5 isoform b [Homo sapiens] 2039 0.0
gi|31657127 Hermansky-Pudlak syndrome 5 isoform b [Homo sapiens] 2039 0.0
gi|7662058 tectonin beta-propeller repeat containing 2 [Homo sap... 88 4e-17
gi|94400925 synaptonemal complex protein 2-like [Homo sapiens] 41 0.005
gi|29789373 hypothetical protein LOC92689 [Homo sapiens] 40 0.015
gi|217330601 SP140 nuclear body protein isoform 1 [Homo sapiens] 37 0.094
gi|225543474 myotubularin related protein 7 [Homo sapiens] 36 0.16
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 36 0.16
gi|156104891 general transcription factor IIF, polypeptide 1, 74... 35 0.27
gi|182515228 mouse Mdm1 nuclear protein homolog isoform 1 [Homo ... 35 0.27
gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens] 35 0.27
gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens] 35 0.27
gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo ... 35 0.36
gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo ... 35 0.36
gi|4507241 structure specific recognition protein 1 [Homo sapiens] 35 0.36
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 35 0.47
gi|154759293 cysteine-rich hydrophobic domain 1 [Homo sapiens] 34 0.61
gi|134304846 Rb1-inducible coiled coil protein 1 isoform 2 [Homo... 33 1.0
gi|134304842 Rb1-inducible coiled coil protein 1 isoform 1 [Homo... 33 1.0
gi|75677376 coiled-coil domain containing 62 isoform b [Homo sap... 33 1.0
gi|30348972 coiled-coil domain containing 62 isoform a [Homo sap... 33 1.0
gi|210032580 SET domain containing 1B [Homo sapiens] 33 1.0
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 33 1.4
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 33 1.4
gi|215490056 meningioma expressed antigen 5 (hyaluronidase) isof... 33 1.4
gi|11024698 meningioma expressed antigen 5 (hyaluronidase) isofo... 33 1.4
gi|22749303 hypothetical protein LOC196477 [Homo sapiens] 33 1.4
gi|4557365 Bloom syndrome protein [Homo sapiens] 33 1.8
gi|38176300 nestin [Homo sapiens] 33 1.8
>gi|31657123 Hermansky-Pudlak syndrome 5 isoform a [Homo sapiens]
Length = 1129
Score = 2039 bits (5282), Expect = 0.0
Identities = 1015/1015 (100%), Positives = 1015/1015 (100%)
Query: 1 MYVSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITT 60
MYVSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITT
Sbjct: 115 MYVSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITT 174
Query: 61 VDSCVVQLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERDGEYGACFFPGRCSGGQQP 120
VDSCVVQLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERDGEYGACFFPGRCSGGQQP
Sbjct: 175 VDSCVVQLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERDGEYGACFFPGRCSGGQQP 234
Query: 121 LIYCARPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPK 180
LIYCARPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPK
Sbjct: 235 LIYCARPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPK 294
Query: 181 LLHLSEHCVLTWTERGIYIFIPQNVQVLLWSEVKDIQDVAVCRNELFCLHLNGKVSHLSL 240
LLHLSEHCVLTWTERGIYIFIPQNVQVLLWSEVKDIQDVAVCRNELFCLHLNGKVSHLSL
Sbjct: 295 LLHLSEHCVLTWTERGIYIFIPQNVQVLLWSEVKDIQDVAVCRNELFCLHLNGKVSHLSL 354
Query: 241 ISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLI 300
ISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLI
Sbjct: 355 ISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLI 414
Query: 301 SQLEELILKFEPLDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQT 360
SQLEELILKFEPLDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQT
Sbjct: 415 SQLEELILKFEPLDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQT 474
Query: 361 LSEDERFKEFTSQQEEDLPDQCCGSHGNEDNVSHAPVMFETDKNETFLPFGIPLPFRSPS 420
LSEDERFKEFTSQQEEDLPDQCCGSHGNEDNVSHAPVMFETDKNETFLPFGIPLPFRSPS
Sbjct: 475 LSEDERFKEFTSQQEEDLPDQCCGSHGNEDNVSHAPVMFETDKNETFLPFGIPLPFRSPS 534
Query: 421 PLVSLQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDT 480
PLVSLQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDT
Sbjct: 535 PLVSLQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDT 594
Query: 481 EEEKEVTSPPPEEDRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMK 540
EEEKEVTSPPPEEDRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMK
Sbjct: 595 EEEKEVTSPPPEEDRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMK 654
Query: 541 DFSGVSDTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRSPR 600
DFSGVSDTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRSPR
Sbjct: 655 DFSGVSDTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRSPR 714
Query: 601 ESLDDLFQICSPCAIASGLRNDLAELTTLCLELNVLNSKIKSTSGHVDHTLQQYSPEILA 660
ESLDDLFQICSPCAIASGLRNDLAELTTLCLELNVLNSKIKSTSGHVDHTLQQYSPEILA
Sbjct: 715 ESLDDLFQICSPCAIASGLRNDLAELTTLCLELNVLNSKIKSTSGHVDHTLQQYSPEILA 774
Query: 661 CQFLKKYFFLLNLKRAKESIKLSYSNSPSVWDTFIEGLKEMASSNPVYMEMEKGDLPTRL 720
CQFLKKYFFLLNLKRAKESIKLSYSNSPSVWDTFIEGLKEMASSNPVYMEMEKGDLPTRL
Sbjct: 775 CQFLKKYFFLLNLKRAKESIKLSYSNSPSVWDTFIEGLKEMASSNPVYMEMEKGDLPTRL 834
Query: 721 KLLDDEVPFDSPLLVVYATRLYEKFGESALRSLIKFFPSILPSDIIQLCHHHPAEFLAYL 780
KLLDDEVPFDSPLLVVYATRLYEKFGESALRSLIKFFPSILPSDIIQLCHHHPAEFLAYL
Sbjct: 835 KLLDDEVPFDSPLLVVYATRLYEKFGESALRSLIKFFPSILPSDIIQLCHHHPAEFLAYL 894
Query: 781 DSLVKSRPEDQRSSFLESLLQPESLRLDWLLLAVSLDAPPSTSTMDDEGYPRPHSHLLSW 840
DSLVKSRPEDQRSSFLESLLQPESLRLDWLLLAVSLDAPPSTSTMDDEGYPRPHSHLLSW
Sbjct: 895 DSLVKSRPEDQRSSFLESLLQPESLRLDWLLLAVSLDAPPSTSTMDDEGYPRPHSHLLSW 954
Query: 841 GYSQLILHLIKLPADFITKEKMTDICRSCGFWPGYLILCLELERRREAFTNIVYLNDMSL 900
GYSQLILHLIKLPADFITKEKMTDICRSCGFWPGYLILCLELERRREAFTNIVYLNDMSL
Sbjct: 955 GYSQLILHLIKLPADFITKEKMTDICRSCGFWPGYLILCLELERRREAFTNIVYLNDMSL 1014
Query: 901 MEGDNGWIPETVEEWKLLLHLIQSKSTRPAPQESLNGSLSDGPSPINVENVALLLAKAMG 960
MEGDNGWIPETVEEWKLLLHLIQSKSTRPAPQESLNGSLSDGPSPINVENVALLLAKAMG
Sbjct: 1015 MEGDNGWIPETVEEWKLLLHLIQSKSTRPAPQESLNGSLSDGPSPINVENVALLLAKAMG 1074
Query: 961 PDRAWSLLQECGLALELSEKFTRTCDILRIAEKRQRALIQSMLEKCDRFLWSQQA 1015
PDRAWSLLQECGLALELSEKFTRTCDILRIAEKRQRALIQSMLEKCDRFLWSQQA
Sbjct: 1075 PDRAWSLLQECGLALELSEKFTRTCDILRIAEKRQRALIQSMLEKCDRFLWSQQA 1129
>gi|31657125 Hermansky-Pudlak syndrome 5 isoform b [Homo sapiens]
Length = 1015
Score = 2039 bits (5282), Expect = 0.0
Identities = 1015/1015 (100%), Positives = 1015/1015 (100%)
Query: 1 MYVSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITT 60
MYVSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITT
Sbjct: 1 MYVSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITT 60
Query: 61 VDSCVVQLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERDGEYGACFFPGRCSGGQQP 120
VDSCVVQLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERDGEYGACFFPGRCSGGQQP
Sbjct: 61 VDSCVVQLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERDGEYGACFFPGRCSGGQQP 120
Query: 121 LIYCARPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPK 180
LIYCARPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPK
Sbjct: 121 LIYCARPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPK 180
Query: 181 LLHLSEHCVLTWTERGIYIFIPQNVQVLLWSEVKDIQDVAVCRNELFCLHLNGKVSHLSL 240
LLHLSEHCVLTWTERGIYIFIPQNVQVLLWSEVKDIQDVAVCRNELFCLHLNGKVSHLSL
Sbjct: 181 LLHLSEHCVLTWTERGIYIFIPQNVQVLLWSEVKDIQDVAVCRNELFCLHLNGKVSHLSL 240
Query: 241 ISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLI 300
ISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLI
Sbjct: 241 ISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLI 300
Query: 301 SQLEELILKFEPLDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQT 360
SQLEELILKFEPLDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQT
Sbjct: 301 SQLEELILKFEPLDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQT 360
Query: 361 LSEDERFKEFTSQQEEDLPDQCCGSHGNEDNVSHAPVMFETDKNETFLPFGIPLPFRSPS 420
LSEDERFKEFTSQQEEDLPDQCCGSHGNEDNVSHAPVMFETDKNETFLPFGIPLPFRSPS
Sbjct: 361 LSEDERFKEFTSQQEEDLPDQCCGSHGNEDNVSHAPVMFETDKNETFLPFGIPLPFRSPS 420
Query: 421 PLVSLQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDT 480
PLVSLQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDT
Sbjct: 421 PLVSLQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDT 480
Query: 481 EEEKEVTSPPPEEDRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMK 540
EEEKEVTSPPPEEDRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMK
Sbjct: 481 EEEKEVTSPPPEEDRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMK 540
Query: 541 DFSGVSDTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRSPR 600
DFSGVSDTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRSPR
Sbjct: 541 DFSGVSDTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRSPR 600
Query: 601 ESLDDLFQICSPCAIASGLRNDLAELTTLCLELNVLNSKIKSTSGHVDHTLQQYSPEILA 660
ESLDDLFQICSPCAIASGLRNDLAELTTLCLELNVLNSKIKSTSGHVDHTLQQYSPEILA
Sbjct: 601 ESLDDLFQICSPCAIASGLRNDLAELTTLCLELNVLNSKIKSTSGHVDHTLQQYSPEILA 660
Query: 661 CQFLKKYFFLLNLKRAKESIKLSYSNSPSVWDTFIEGLKEMASSNPVYMEMEKGDLPTRL 720
CQFLKKYFFLLNLKRAKESIKLSYSNSPSVWDTFIEGLKEMASSNPVYMEMEKGDLPTRL
Sbjct: 661 CQFLKKYFFLLNLKRAKESIKLSYSNSPSVWDTFIEGLKEMASSNPVYMEMEKGDLPTRL 720
Query: 721 KLLDDEVPFDSPLLVVYATRLYEKFGESALRSLIKFFPSILPSDIIQLCHHHPAEFLAYL 780
KLLDDEVPFDSPLLVVYATRLYEKFGESALRSLIKFFPSILPSDIIQLCHHHPAEFLAYL
Sbjct: 721 KLLDDEVPFDSPLLVVYATRLYEKFGESALRSLIKFFPSILPSDIIQLCHHHPAEFLAYL 780
Query: 781 DSLVKSRPEDQRSSFLESLLQPESLRLDWLLLAVSLDAPPSTSTMDDEGYPRPHSHLLSW 840
DSLVKSRPEDQRSSFLESLLQPESLRLDWLLLAVSLDAPPSTSTMDDEGYPRPHSHLLSW
Sbjct: 781 DSLVKSRPEDQRSSFLESLLQPESLRLDWLLLAVSLDAPPSTSTMDDEGYPRPHSHLLSW 840
Query: 841 GYSQLILHLIKLPADFITKEKMTDICRSCGFWPGYLILCLELERRREAFTNIVYLNDMSL 900
GYSQLILHLIKLPADFITKEKMTDICRSCGFWPGYLILCLELERRREAFTNIVYLNDMSL
Sbjct: 841 GYSQLILHLIKLPADFITKEKMTDICRSCGFWPGYLILCLELERRREAFTNIVYLNDMSL 900
Query: 901 MEGDNGWIPETVEEWKLLLHLIQSKSTRPAPQESLNGSLSDGPSPINVENVALLLAKAMG 960
MEGDNGWIPETVEEWKLLLHLIQSKSTRPAPQESLNGSLSDGPSPINVENVALLLAKAMG
Sbjct: 901 MEGDNGWIPETVEEWKLLLHLIQSKSTRPAPQESLNGSLSDGPSPINVENVALLLAKAMG 960
Query: 961 PDRAWSLLQECGLALELSEKFTRTCDILRIAEKRQRALIQSMLEKCDRFLWSQQA 1015
PDRAWSLLQECGLALELSEKFTRTCDILRIAEKRQRALIQSMLEKCDRFLWSQQA
Sbjct: 961 PDRAWSLLQECGLALELSEKFTRTCDILRIAEKRQRALIQSMLEKCDRFLWSQQA 1015
>gi|31657127 Hermansky-Pudlak syndrome 5 isoform b [Homo sapiens]
Length = 1015
Score = 2039 bits (5282), Expect = 0.0
Identities = 1015/1015 (100%), Positives = 1015/1015 (100%)
Query: 1 MYVSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITT 60
MYVSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITT
Sbjct: 1 MYVSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITT 60
Query: 61 VDSCVVQLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERDGEYGACFFPGRCSGGQQP 120
VDSCVVQLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERDGEYGACFFPGRCSGGQQP
Sbjct: 61 VDSCVVQLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERDGEYGACFFPGRCSGGQQP 120
Query: 121 LIYCARPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPK 180
LIYCARPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPK
Sbjct: 121 LIYCARPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPK 180
Query: 181 LLHLSEHCVLTWTERGIYIFIPQNVQVLLWSEVKDIQDVAVCRNELFCLHLNGKVSHLSL 240
LLHLSEHCVLTWTERGIYIFIPQNVQVLLWSEVKDIQDVAVCRNELFCLHLNGKVSHLSL
Sbjct: 181 LLHLSEHCVLTWTERGIYIFIPQNVQVLLWSEVKDIQDVAVCRNELFCLHLNGKVSHLSL 240
Query: 241 ISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLI 300
ISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLI
Sbjct: 241 ISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLI 300
Query: 301 SQLEELILKFEPLDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQT 360
SQLEELILKFEPLDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQT
Sbjct: 301 SQLEELILKFEPLDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQT 360
Query: 361 LSEDERFKEFTSQQEEDLPDQCCGSHGNEDNVSHAPVMFETDKNETFLPFGIPLPFRSPS 420
LSEDERFKEFTSQQEEDLPDQCCGSHGNEDNVSHAPVMFETDKNETFLPFGIPLPFRSPS
Sbjct: 361 LSEDERFKEFTSQQEEDLPDQCCGSHGNEDNVSHAPVMFETDKNETFLPFGIPLPFRSPS 420
Query: 421 PLVSLQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDT 480
PLVSLQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDT
Sbjct: 421 PLVSLQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDT 480
Query: 481 EEEKEVTSPPPEEDRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMK 540
EEEKEVTSPPPEEDRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMK
Sbjct: 481 EEEKEVTSPPPEEDRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMK 540
Query: 541 DFSGVSDTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRSPR 600
DFSGVSDTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRSPR
Sbjct: 541 DFSGVSDTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRSPR 600
Query: 601 ESLDDLFQICSPCAIASGLRNDLAELTTLCLELNVLNSKIKSTSGHVDHTLQQYSPEILA 660
ESLDDLFQICSPCAIASGLRNDLAELTTLCLELNVLNSKIKSTSGHVDHTLQQYSPEILA
Sbjct: 601 ESLDDLFQICSPCAIASGLRNDLAELTTLCLELNVLNSKIKSTSGHVDHTLQQYSPEILA 660
Query: 661 CQFLKKYFFLLNLKRAKESIKLSYSNSPSVWDTFIEGLKEMASSNPVYMEMEKGDLPTRL 720
CQFLKKYFFLLNLKRAKESIKLSYSNSPSVWDTFIEGLKEMASSNPVYMEMEKGDLPTRL
Sbjct: 661 CQFLKKYFFLLNLKRAKESIKLSYSNSPSVWDTFIEGLKEMASSNPVYMEMEKGDLPTRL 720
Query: 721 KLLDDEVPFDSPLLVVYATRLYEKFGESALRSLIKFFPSILPSDIIQLCHHHPAEFLAYL 780
KLLDDEVPFDSPLLVVYATRLYEKFGESALRSLIKFFPSILPSDIIQLCHHHPAEFLAYL
Sbjct: 721 KLLDDEVPFDSPLLVVYATRLYEKFGESALRSLIKFFPSILPSDIIQLCHHHPAEFLAYL 780
Query: 781 DSLVKSRPEDQRSSFLESLLQPESLRLDWLLLAVSLDAPPSTSTMDDEGYPRPHSHLLSW 840
DSLVKSRPEDQRSSFLESLLQPESLRLDWLLLAVSLDAPPSTSTMDDEGYPRPHSHLLSW
Sbjct: 781 DSLVKSRPEDQRSSFLESLLQPESLRLDWLLLAVSLDAPPSTSTMDDEGYPRPHSHLLSW 840
Query: 841 GYSQLILHLIKLPADFITKEKMTDICRSCGFWPGYLILCLELERRREAFTNIVYLNDMSL 900
GYSQLILHLIKLPADFITKEKMTDICRSCGFWPGYLILCLELERRREAFTNIVYLNDMSL
Sbjct: 841 GYSQLILHLIKLPADFITKEKMTDICRSCGFWPGYLILCLELERRREAFTNIVYLNDMSL 900
Query: 901 MEGDNGWIPETVEEWKLLLHLIQSKSTRPAPQESLNGSLSDGPSPINVENVALLLAKAMG 960
MEGDNGWIPETVEEWKLLLHLIQSKSTRPAPQESLNGSLSDGPSPINVENVALLLAKAMG
Sbjct: 901 MEGDNGWIPETVEEWKLLLHLIQSKSTRPAPQESLNGSLSDGPSPINVENVALLLAKAMG 960
Query: 961 PDRAWSLLQECGLALELSEKFTRTCDILRIAEKRQRALIQSMLEKCDRFLWSQQA 1015
PDRAWSLLQECGLALELSEKFTRTCDILRIAEKRQRALIQSMLEKCDRFLWSQQA
Sbjct: 961 PDRAWSLLQECGLALELSEKFTRTCDILRIAEKRQRALIQSMLEKCDRFLWSQQA 1015
>gi|7662058 tectonin beta-propeller repeat containing 2 [Homo
sapiens]
Length = 1411
Score = 88.2 bits (217), Expect = 4e-17
Identities = 74/244 (30%), Positives = 108/244 (44%), Gaps = 20/244 (8%)
Query: 3 VSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITTVD 62
V+ HK +TAL W +++F GD GK+ L+ + + Q +
Sbjct: 122 VTGIHKNS-ITALAWSPNGMKLFSGDDKGKIVYSSLDLDQG--------LCNSQLVLEEP 172
Query: 63 SCVVQLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKER--DGEYGACFFPGRCSGGQQP 120
S +VQLDY LL+S+L RS L TE + +IG + R G++GACF PG C
Sbjct: 173 SSIVQLDYSQKVLLVSTLQRSLLFYTEEKSVRQIGTQPRKSTGKFGACFIPGLCKQSDLT 232
Query: 121 LIYCARPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPK 180
L Y +RPG R+W+ + G V +T K + P P+ + S SL
Sbjct: 233 L-YASRPGLRLWKADVHGTVQATFILKDAFAGGVKP---FELHPRLESPNSGSCSLPERH 288
Query: 181 L----LHLSEHCVLTWTERGIYIFIPQNVQVLLWSEVK-DIQDVAVCRNELFCLHLNGKV 235
L E VL+W E IY+ N + E DI V+ NE+F L + +
Sbjct: 289 LGLVSCFFQEGWVLSWNEYSIYLLDTVNQATIAGLEGSGDIVSVSCTENEIFFLKGDRNI 348
Query: 236 SHLS 239
+S
Sbjct: 349 IRIS 352
>gi|94400925 synaptonemal complex protein 2-like [Homo sapiens]
Length = 812
Score = 41.2 bits (95), Expect = 0.005
Identities = 65/241 (26%), Positives = 100/241 (41%), Gaps = 39/241 (16%)
Query: 341 ISSRRGSQSDEDSCSLHSQTLSEDERFKEFTSQQE----EDLPDQCCGS-HGNEDNVSHA 395
ISS S+SD++ S E E+ +E T+ E ED D+C + H N+ S
Sbjct: 414 ISSELFSKSDKEDRESPSGLERETEQAEESTNMVEFMSAED--DRCLITLHLNDQ--SEP 469
Query: 396 PVMFETDKN---ETFLPFGIPLPFRSPSP-----LVSLQAVKESVSSFVRKTTEKIGTL- 446
PV+ E + + PFG+P + P L S S S + +K +L
Sbjct: 470 PVIGEPASDSHLQPVPPFGVPDFPQQPKSHYRKHLFSESNQDSSTSELSWTSNQKKKSLK 529
Query: 447 --------HTSPDLKVRPELRGDEQSC-EEDVSSDTCPKEEDTEEEKEVTSPPPEEDRFQ 497
T +L++ P S E+D + P E++ E+ TSP E +FQ
Sbjct: 530 SYSSRKKTRTRSNLRILPVFPPSSGSGHEKDQAKLLSPSEKEIPEQNNTTSPKTSEQKFQ 589
Query: 498 E----LKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMKDFSGVSDTDNSSM 553
+ L + T+LQDP L E SL+ H E K + S T+++S+
Sbjct: 590 DSFAFLTAEDSAQKTELQDPHSLSELSSLK--------HSEDEEKPKIVNQESLTESTSL 641
Query: 554 K 554
K
Sbjct: 642 K 642
>gi|29789373 hypothetical protein LOC92689 [Homo sapiens]
Length = 563
Score = 39.7 bits (91), Expect = 0.015
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 426 QAVKESVSSFVRKTTEKIGTLHTS--PDLKVRPELRGDEQSCEED---VSSDTCP--KEE 478
Q ++E F R TE + LH + PD K+ ++ EED VS D +EE
Sbjct: 356 QGLEEKGEEFARMLTELLFELHVAATPD-KLNKAMKRAHDWVEEDQTVVSVDVAKVSEEE 414
Query: 479 DTEEEKEVTSPPPEEDRFQELKVATAE 505
+EEKE S P+ED+ +E K T E
Sbjct: 415 TKKEEKEEKSQDPQEDKKEEKKTKTIE 441
>gi|217330601 SP140 nuclear body protein isoform 1 [Homo sapiens]
Length = 867
Score = 37.0 bits (84), Expect = 0.094
Identities = 50/225 (22%), Positives = 83/225 (36%), Gaps = 12/225 (5%)
Query: 393 SHAPVMFETDKNETFLPFGIPLPFRSPSPLVSLQAVKESVSSFVRKTTEKIGTLHTSPDL 452
S +M D NE + F SP + ++ +++ E H D+
Sbjct: 116 SRINLMAYPDLNEIYRSFQNVCYEHSPLQMNNVNDLEDRPRLLPYGKQENSNACHEMDDI 175
Query: 453 KVRPELRGDEQSCEEDVSSDTC-----PKEEDTEEEKEVTSPPPEEDRFQELKVATAEAM 507
V E CE SS++C PK + E + S P +L + E
Sbjct: 176 AVPQEALSSSPRCEPGFSSESCEQLALPKAGGGDAE-DAPSLLPGGGVSCKLAIQIDEGE 234
Query: 508 TKLQDPLVLFESESLRMVLQEWLSHLEKTF--AMKDFSGVSDTDNSSMKLNQDVLLVNES 565
++ L+ +++E L + +T+ A + G + NS K NQD ES
Sbjct: 235 SEEMPKLLPYDTEVLE---SNGMIDAARTYSTAPGEKQGEEEGRNSPRKRNQDKEKYQES 291
Query: 566 KKGILDEDNEKEKRDSLGNEESVDKTACECVRSPRESLDDLFQIC 610
+G D++ K + NE +K C E DD ++C
Sbjct: 292 PEG-RDKETFDLKTPQVTNEGEPEKGLCLLPGEGEEGSDDCSEMC 335
>gi|225543474 myotubularin related protein 7 [Homo sapiens]
Length = 660
Score = 36.2 bits (82), Expect = 0.16
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 17/111 (15%)
Query: 300 ISQLEELILKFEPLDSACS---SRRSSISSHESFSILD----------SGIYRIISSRRG 346
+ LEE + K + + C+ S++S S H FS D SG + SR
Sbjct: 535 LEALEERLEKIQKVQLNCTKVKSKQSEPSKHSGFSTSDNSIANTPQDYSGNMKSFPSRSP 594
Query: 347 SQSDEDSCSLHSQ-TLSEDERFKEFTSQQEEDLPDQCCGSHGNEDNVSHAP 396
SQ DEDS + +Q L + S QE + D C S + HAP
Sbjct: 595 SQGDEDSALILTQDNLKSSDPDLSANSDQESGVEDLSCRSPSGGE---HAP 642
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 36.2 bits (82), Expect = 0.16
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 450 PDLKVRPELRGDEQSCEEDVSSDTCPKEEDTEEEKEVTSPPPEEDRFQELKVATAEAMTK 509
P V+P+ G E+ EE+ + ++E+ EEE+E EE+ +E + A A A+ +
Sbjct: 721 PLAPVQPQANGKEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEAAAAVALGE 780
Query: 510 LQDP 513
+ P
Sbjct: 781 VLGP 784
>gi|156104891 general transcription factor IIF, polypeptide 1, 74kDa
[Homo sapiens]
Length = 517
Score = 35.4 bits (80), Expect = 0.27
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 461 DEQSCEEDVSSDTCPKEEDTEEEKEVTSPPPEEDR 495
DEQS + S + P EED EEE+E +P P+E +
Sbjct: 302 DEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKK 336
>gi|182515228 mouse Mdm1 nuclear protein homolog isoform 1 [Homo
sapiens]
Length = 714
Score = 35.4 bits (80), Expect = 0.27
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 437 RKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDTEEEKE 485
+ TTEK+G ++P + VR L D ++ EDV KEE+ + E+E
Sbjct: 423 KNTTEKLGV--SAPTIPVRRRLAWDTENTSEDVQKQPGEKEEEDDNEEE 469
>gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens]
Length = 709
Score = 35.4 bits (80), Expect = 0.27
Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 19/167 (11%)
Query: 339 RIISSRRGS----QSDEDSCSLHSQTLSEDERFKEFTSQQEE---DLPDQCCGSHGNEDN 391
RI+S++ S +++E S ++ L D + + +S E + P++ C + +
Sbjct: 83 RIVSTKGKSATEYKNEEYQRSERNKRLDADRKIRLSSSASREPYKNQPEKTCVRKRDPER 142
Query: 392 VSHAPVMFETDKNETFLPFGIPLPFRSPSPLVSLQAVKESVSSFVRKTTEKIGTLHTSPD 451
+ +P +++ G+ + R+ S Q+ KE V+S + + G+ +S +
Sbjct: 143 RAKSPTPDGSER------IGLEVDRRASR---SSQSSKEEVNSEEYGSDHETGSSGSSDE 193
Query: 452 LKVRPELRGDEQSCEEDVSSDTCPKEEDTEEEKEVTSPPPEEDRFQE 498
E +E+ EEDV D EED EE++EV EE+ +E
Sbjct: 194 QGNNTE--NEEEGVEEDVEEDE-EVEEDAEEDEEVDEDGEEEEEEEE 237
>gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens]
Length = 727
Score = 35.4 bits (80), Expect = 0.27
Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 19/167 (11%)
Query: 339 RIISSRRGS----QSDEDSCSLHSQTLSEDERFKEFTSQQEE---DLPDQCCGSHGNEDN 391
RI+S++ S +++E S ++ L D + + +S E + P++ C + +
Sbjct: 83 RIVSTKGKSATEYKNEEYQRSERNKRLDADRKIRLSSSASREPYKNQPEKTCVRKRDPER 142
Query: 392 VSHAPVMFETDKNETFLPFGIPLPFRSPSPLVSLQAVKESVSSFVRKTTEKIGTLHTSPD 451
+ +P +++ G+ + R+ S Q+ KE V+S + + G+ +S +
Sbjct: 143 RAKSPTPDGSER------IGLEVDRRASR---SSQSSKEEVNSEEYGSDHETGSSGSSDE 193
Query: 452 LKVRPELRGDEQSCEEDVSSDTCPKEEDTEEEKEVTSPPPEEDRFQE 498
E +E+ EEDV D EED EE++EV EE+ +E
Sbjct: 194 QGNNTE--NEEEGVEEDVEEDE-EVEEDAEEDEEVDEDGEEEEEEEE 237
>gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo
sapiens]
Length = 5033
Score = 35.0 bits (79), Expect = 0.36
Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 22/181 (12%)
Query: 454 VRPELRGDEQSCEEDVSSDTCPKEEDTEEEKEVTSPPPEEDRFQELKVATAEAMTKLQDP 513
+ PE+ +E+ E++ EE+ EE++E T+ E++ +E + A E L++
Sbjct: 1866 IEPEVFTEEEEEEDEEEEGEEEDEEEKEEDEEETAQEKEDEEKEEEEAAEGEKEEGLEEG 1925
Query: 514 LV---LFESESLRMV-LQEWLSHLEKTFAMKDFSGVSDTDNSSMKLNQDVLLVNESKKGI 569
L+ L ES L+M L E+ E ++ + ++ ++ NQ S+ G+
Sbjct: 1926 LLQMKLPESVKLQMCHLLEYFCDQELQHRVESLAAFAERYVDKLQANQ------RSRYGL 1979
Query: 570 LDEDNEKEKRDSLGNEESVDKTACECVRSPRESLDDLFQIC-----SPCAIASGLRNDLA 624
L K S+ E+ +T E P+E ++ L Q C + +R DL
Sbjct: 1980 L------IKAFSMTAAETARRTR-EFRSPPQEQINMLLQFKDGTDEEDCPLPEEIRQDLL 2032
Query: 625 E 625
+
Sbjct: 2033 D 2033
>gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo
sapiens]
Length = 5038
Score = 35.0 bits (79), Expect = 0.36
Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 22/181 (12%)
Query: 454 VRPELRGDEQSCEEDVSSDTCPKEEDTEEEKEVTSPPPEEDRFQELKVATAEAMTKLQDP 513
+ PE+ +E+ E++ EE+ EE++E T+ E++ +E + A E L++
Sbjct: 1866 IEPEVFTEEEEEEDEEEEGEEEDEEEKEEDEEETAQEKEDEEKEEEEAAEGEKEEGLEEG 1925
Query: 514 LV---LFESESLRMV-LQEWLSHLEKTFAMKDFSGVSDTDNSSMKLNQDVLLVNESKKGI 569
L+ L ES L+M L E+ E ++ + ++ ++ NQ S+ G+
Sbjct: 1926 LLQMKLPESVKLQMCHLLEYFCDQELQHRVESLAAFAERYVDKLQANQ------RSRYGL 1979
Query: 570 LDEDNEKEKRDSLGNEESVDKTACECVRSPRESLDDLFQIC-----SPCAIASGLRNDLA 624
L K S+ E+ +T E P+E ++ L Q C + +R DL
Sbjct: 1980 L------IKAFSMTAAETARRTR-EFRSPPQEQINMLLQFKDGTDEEDCPLPEEIRQDLL 2032
Query: 625 E 625
+
Sbjct: 2033 D 2033
>gi|4507241 structure specific recognition protein 1 [Homo sapiens]
Length = 709
Score = 35.0 bits (79), Expect = 0.36
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 423 VSLQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDTEE 482
V ++ K+S S R ++ K + S K + + DE S E+ S + ED+EE
Sbjct: 633 VKVKMEKKSTPS--RGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKKRRRSEDSEE 690
Query: 483 EKEVTSPPPEED 494
E+ ++PP ED
Sbjct: 691 EELASTPPSSED 702
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 34.7 bits (78), Expect = 0.47
Identities = 25/62 (40%), Positives = 29/62 (46%)
Query: 315 SACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQTLSEDERFKEFTSQQ 374
S+CSSR SS SS S S SG SS S S S S S + S +E S +
Sbjct: 2141 SSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDSDE 2200
Query: 375 EE 376
EE
Sbjct: 2201 EE 2202
>gi|154759293 cysteine-rich hydrophobic domain 1 [Homo sapiens]
Length = 224
Score = 34.3 bits (77), Expect = 0.61
Identities = 20/72 (27%), Positives = 34/72 (47%)
Query: 420 SPLVSLQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEED 479
S L+ A +++S + E+ T +SP D++ EE+ + +EE+
Sbjct: 2 SILLPNMAEFDTISELEEEEEEEAATSSSSPSSSSSVSGPDDDEEDEEEEEEEEEEEEEE 61
Query: 480 TEEEKEVTSPPP 491
EEE+E PPP
Sbjct: 62 EEEEEEEAPPPP 73
>gi|134304846 Rb1-inducible coiled coil protein 1 isoform 2 [Homo
sapiens]
Length = 1591
Score = 33.5 bits (75), Expect = 1.0
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 5/131 (3%)
Query: 457 ELRGDEQSCEEDVSSDTCPKEEDTEEEKEVTSPPPEEDRFQELKVATAEAMTKLQDPLVL 516
E + DE+ +++ + + + + +K V+S E+DR Q ++ E +Q L
Sbjct: 1191 ERQKDEKITQQEEKYEAIIQNLEKDRQKLVSSQ--EQDREQLIQKLNCEKDEAIQTALKE 1248
Query: 517 F--ESESLRMVLQEWLSHLEKTFAMKDFSGVSDTDNSSMKLNQDVLLVNESKKGILD-ED 573
F E E + L E + HLE A + D+SS+ L E K + E+
Sbjct: 1249 FKLEREVVEKELLEKVKHLENQIAKSPAIDSTRGDSSSLVAELQEKLQEEKAKFLEQLEE 1308
Query: 574 NEKEKRDSLGN 584
EK K + + N
Sbjct: 1309 QEKRKNEEMQN 1319
>gi|134304842 Rb1-inducible coiled coil protein 1 isoform 1 [Homo
sapiens]
Length = 1594
Score = 33.5 bits (75), Expect = 1.0
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 5/131 (3%)
Query: 457 ELRGDEQSCEEDVSSDTCPKEEDTEEEKEVTSPPPEEDRFQELKVATAEAMTKLQDPLVL 516
E + DE+ +++ + + + + +K V+S E+DR Q ++ E +Q L
Sbjct: 1191 ERQKDEKITQQEEKYEAIIQNLEKDRQKLVSSQ--EQDREQLIQKLNCEKDEAIQTALKE 1248
Query: 517 F--ESESLRMVLQEWLSHLEKTFAMKDFSGVSDTDNSSMKLNQDVLLVNESKKGILD-ED 573
F E E + L E + HLE A + D+SS+ L E K + E+
Sbjct: 1249 FKLEREVVEKELLEKVKHLENQIAKSPAIDSTRGDSSSLVAELQEKLQEEKAKFLEQLEE 1308
Query: 574 NEKEKRDSLGN 584
EK K + + N
Sbjct: 1309 QEKRKNEEMQN 1319
>gi|75677376 coiled-coil domain containing 62 isoform b [Homo
sapiens]
Length = 684
Score = 33.5 bits (75), Expect = 1.0
Identities = 45/207 (21%), Positives = 90/207 (43%), Gaps = 19/207 (9%)
Query: 425 LQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPEL--RGDEQSCEEDVSSDTCPKEEDTEE 482
L+A+K V+ EK T+ + + R E+ E+SC D T +E+ +E
Sbjct: 212 LKALKIEVNKLKEDLNEK-----TTENNEQREEIIRLKQEKSCLHDELLFTVEREKRKDE 266
Query: 483 EKEVTSPPPEE--DRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMK 540
+ E L+ + + LQ + F E+ + ++Q + S +E++ A+
Sbjct: 267 LLNIAKSKQERTNSELHNLRQIYVKQQSDLQ--FLNFNVENSQELIQMYDSKMEESKALD 324
Query: 541 DFSGV--SDTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRS 598
+ SD +N+ K++ + E + L +D + E L + DK++C+ +
Sbjct: 325 SSRDMCLSDLENNHPKVD----IKREKNQKSLFKDQKFEAM--LVQQNRSDKSSCDECKE 378
Query: 599 PRESLDDLFQICSPCAIASGLRNDLAE 625
++ +D +F S ++S DL E
Sbjct: 379 KKQQIDTVFGEKSVITLSSIFTKDLVE 405
>gi|30348972 coiled-coil domain containing 62 isoform a [Homo
sapiens]
Length = 682
Score = 33.5 bits (75), Expect = 1.0
Identities = 45/207 (21%), Positives = 90/207 (43%), Gaps = 19/207 (9%)
Query: 425 LQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPEL--RGDEQSCEEDVSSDTCPKEEDTEE 482
L+A+K V+ EK T+ + + R E+ E+SC D T +E+ +E
Sbjct: 212 LKALKIEVNKLKEDLNEK-----TTENNEQREEIIRLKQEKSCLHDELLFTVEREKRKDE 266
Query: 483 EKEVTSPPPEE--DRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMK 540
+ E L+ + + LQ + F E+ + ++Q + S +E++ A+
Sbjct: 267 LLNIAKSKQERTNSELHNLRQIYVKQQSDLQ--FLNFNVENSQELIQMYDSKMEESKALD 324
Query: 541 DFSGV--SDTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRS 598
+ SD +N+ K++ + E + L +D + E L + DK++C+ +
Sbjct: 325 SSRDMCLSDLENNHPKVD----IKREKNQKSLFKDQKFEAM--LVQQNRSDKSSCDECKE 378
Query: 599 PRESLDDLFQICSPCAIASGLRNDLAE 625
++ +D +F S ++S DL E
Sbjct: 379 KKQQIDTVFGEKSVITLSSIFTKDLVE 405
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 33.5 bits (75), Expect = 1.0
Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 13/106 (12%)
Query: 313 LDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQTLSEDE-----RF 367
L A E+ SI+ S SS S+ +S S S + SEDE R
Sbjct: 1083 LSEASEKDEGDSDEEETVSIVTSKAEATSSSESSESSEFESSSESSPSSSEDEEEVVARE 1142
Query: 368 KEFTSQQEEDLPDQCCGSHGNEDNVSHAPVMFETDKNETFLPFGIP 413
+E ++EE + ++ S G ED FE D E L G P
Sbjct: 1143 EEEEEEEEEMVAEESMASAGPED--------FEQDGEEAALAPGAP 1180
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 33.1 bits (74), Expect = 1.4
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 413 PLPFRSPSPLVSLQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSD 472
P+ + SP VS V+E S V K+ + + K + E+ EQ EE+
Sbjct: 660 PVEEKGKSP-VSKSPVEEKAKSPVPKSPVE--------EAKSKAEVGKGEQKEEEEKEVK 710
Query: 473 TCPKEEDTEEEKEVTSPPPEEDRFQE--LKVATAEAMTKLQDPLVLFESES 521
PKEE E+++E PE+ + + + A AE +T + V E E+
Sbjct: 711 EAPKEEKVEKKEEKPKDVPEKKKAESPVKEEAVAEVVTITKSVKVHLEKET 761
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 33.1 bits (74), Expect = 1.4
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 413 PLPFRSPSPLVSLQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSD 472
P+ + SP VS V+E S V K+ + + K + E+ EQ EE+
Sbjct: 284 PVEEKGKSP-VSKSPVEEKAKSPVPKSPVE--------EAKSKAEVGKGEQKEEEEKEVK 334
Query: 473 TCPKEEDTEEEKEVTSPPPEEDRFQE--LKVATAEAMTKLQDPLVLFESES 521
PKEE E+++E PE+ + + + A AE +T + V E E+
Sbjct: 335 EAPKEEKVEKKEEKPKDVPEKKKAESPVKEEAVAEVVTITKSVKVHLEKET 385
>gi|215490056 meningioma expressed antigen 5 (hyaluronidase) isoform
b [Homo sapiens]
Length = 863
Score = 33.1 bits (74), Expect = 1.4
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 438 KTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDTEEEKEVTSPPPEEDRFQ 497
K E++ + T D + E + E S +ED SD P + D + KE P P E
Sbjct: 438 KMAEELKPMDT--DKESIAESKSPEMSMQEDCISDIAPMQTDEQTNKEQFVPGPNEKPLY 495
Query: 498 ELKVATAEAMTKLQD 512
+ T E + L D
Sbjct: 496 TAEPVTLEDLQLLAD 510
>gi|11024698 meningioma expressed antigen 5 (hyaluronidase) isoform
a [Homo sapiens]
Length = 916
Score = 33.1 bits (74), Expect = 1.4
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 438 KTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDTEEEKEVTSPPPEEDRFQ 497
K E++ + T D + E + E S +ED SD P + D + KE P P E
Sbjct: 491 KMAEELKPMDT--DKESIAESKSPEMSMQEDCISDIAPMQTDEQTNKEQFVPGPNEKPLY 548
Query: 498 ELKVATAEAMTKLQD 512
+ T E + L D
Sbjct: 549 TAEPVTLEDLQLLAD 563
>gi|22749303 hypothetical protein LOC196477 [Homo sapiens]
Length = 406
Score = 33.1 bits (74), Expect = 1.4
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 466 EEDVSSDTCPKEEDTEEEKEVTSPPPEEDRFQELKVATAEAMTKLQDPLVLFESESLRMV 525
EE+ + C +E +EEE+EV E + +E +V AE + + ++ L E E V
Sbjct: 287 EEEYDQEVCDAKEASEEEEEVEDEEEEVEDEEEEEVEEAEYVEEGEEELEEEELEEEEEV 346
Query: 526 LQE 528
L+E
Sbjct: 347 LEE 349
>gi|4557365 Bloom syndrome protein [Homo sapiens]
Length = 1417
Score = 32.7 bits (73), Expect = 1.8
Identities = 58/287 (20%), Positives = 109/287 (37%), Gaps = 35/287 (12%)
Query: 389 EDNVSHAPVMFETDK--NETFLPFGIPLPFRSPSPLVSLQAVKESVSSFVRK-----TTE 441
+D +AP ET + +++ LP + P + VK+S + ++K + +
Sbjct: 87 KDFFKNAPAGQETQRGGSKSLLPDFLQTPKEVVCTTQNTPTVKKSRDTALKKLEFSSSPD 146
Query: 442 KIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDTEEEKEVTSPPPEEDRFQELKV 501
+ T++ D+ D + E S T P+ S + + F+
Sbjct: 147 SLSTINDWDDMD-------DFDTSETSKSFVTPPQSHFVRVSTAQKSKKGKRNFFKAQLY 199
Query: 502 ATAEAMTKLQDPLVLFESESLRMVLQ-----EWLSHLEKTFAMKDFSGVSDTDNSSMKLN 556
T T L P ESE + + + EWLS D + D + + +N
Sbjct: 200 TTNTVKTDLPPPSS--ESEQIDLTEEQKDDSEWLS--------SDVICIDDGPIAEVHIN 249
Query: 557 QDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRSPRESLDDLF------QIC 610
+D + K + DE + EK+ +L E C+ + D F +I
Sbjct: 250 EDAQESDSLKTHLEDERDNSEKKKNLEEAELHSTEKVPCIEFDDDDYDTDFVPPSPEEII 309
Query: 611 SPCAIASGLRNDLAELTTLCLELNVLNSKIKSTSGHVDHTLQQYSPE 657
S + +S + L +L T + +VL++ S ++Q+ +PE
Sbjct: 310 SASSSSSKCLSTLKDLDTSDRKEDVLSTSKDLLSKPEKMSMQELNPE 356
>gi|38176300 nestin [Homo sapiens]
Length = 1621
Score = 32.7 bits (73), Expect = 1.8
Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 18/179 (10%)
Query: 429 KESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDTEEEKEV-T 487
KE++ S + E + TL + E + +S EED+ + ++E+ E K+V
Sbjct: 543 KETLKSLGEEIQESLKTLENQSHETLERENQECPRSLEEDLETLKSLEKENKELLKDVEV 602
Query: 488 SPPPEEDRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMKDFSGVSD 547
P E++ +LK E LQ SL+ QE + LE F G +
Sbjct: 603 VRPLEKEAVGQLKPTGKEDTQTLQ---------SLQKENQELMKSLEGNLETFLFPGTEN 653
Query: 548 TD-NSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRSPRESLDD 605
+ SS++ N + L E E+ E + +G+EE++ E + P SL+D
Sbjct: 654 QELVSSLQENLESLTALEK------ENQEPLRSPEVGDEEALRPLTKE-NQEPLRSLED 705
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,003,234
Number of Sequences: 37866
Number of extensions: 1895555
Number of successful extensions: 7981
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 7510
Number of HSP's gapped (non-prelim): 384
length of query: 1015
length of database: 18,247,518
effective HSP length: 112
effective length of query: 903
effective length of database: 14,006,526
effective search space: 12647892978
effective search space used: 12647892978
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.