Guide to the Human Genome
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Name: HPS5 Sequence: fasta or formatted (1015aa) NCBI GI: 31657125
Description:

Hermansky-Pudlak syndrome 5 isoform b

Referenced in:

Integrins
Lysosomes and Related Organelles

Other entries for this name:
alt prot [1129aa] Hermansky-Pudlak syndrome 5 isoform a
alt mRNA [1015aa] Hermansky-Pudlak syndrome 5 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         49           4
 C cysteine            3.1         31           2
 D aspartate           6.1         62           2
 E glutamate           8.6         87           3
 F phenylalanine       4.1         42           2
 G glycine             4.1         42           2
 H histidine           2.5         25           3
 I isoleucine          4.5         46           2
 K lysine              5.6         57           2
 L leucine            13.3        135           3
 M methionine          1.7         17           1
 N asparagine          2.9         29           1
 P proline             4.9         50           3
 Q glutamine           3.9         40           2
 R arginine            5.4         55           3
 S serine             11.0        112           2
 T threonine           4.8         49           2
 V valine              5.2         53           2
 W tryptophan          1.5         15           1
 Y tyrosine            1.9         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Hermansky-Pudlak syndrome 5 isoform b 
HPS5                  1.000   Hermansky-Pudlak syndrome 5 isoform a 
HPS5                  1.000   Hermansky-Pudlak syndrome 5 isoform b 
TECPR2                0.031   tectonin beta-propeller repeat containing 2 
SYCP2L                0.008   synaptonemal complex protein 2-like 
FAM114A1              0.007   hypothetical protein LOC92689 
SP140                 0.006   SP140 nuclear body protein isoform 1 
MTMR7                 0.005   myotubularin related protein 7 
TTBK1                 0.005   tau tubulin kinase 1 
GTF2F1                0.005   general transcription factor IIF, polypeptide 1, 74...
MDM1                  0.005   mouse Mdm1 nuclear protein homolog isoform 1 
YTHDC1                0.005   splicing factor YT521-B isoform 2 
YTHDC1                0.005   splicing factor YT521-B isoform 1 
RYR1                  0.005   skeletal muscle ryanodine receptor isoform 2 
RYR1                  0.005   skeletal muscle ryanodine receptor isoform 1 
SSRP1                 0.005   structure specific recognition protein 1 
CHD9                  0.005   chromodomain helicase DNA binding protein 9 
CHIC1                 0.004   cysteine-rich hydrophobic domain 1 
RB1CC1                0.004   Rb1-inducible coiled coil protein 1 isoform 2 [Homo...
RB1CC1                0.004   Rb1-inducible coiled coil protein 1 isoform 1 [Homo...
CCDC62                0.004   coiled-coil domain containing 62 isoform b 
CCDC62                0.004   coiled-coil domain containing 62 isoform a 
SETD1B                0.004   SET domain containing 1B 
NEFM                  0.004   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.004   neurofilament, medium polypeptide 150kDa isoform 2 ...
MGEA5                 0.004   meningioma expressed antigen 5 (hyaluronidase) isof...
MGEA5                 0.004   meningioma expressed antigen 5 (hyaluronidase) isofo...
C12orf12              0.004   hypothetical protein LOC196477 
BLM                   0.004   Bloom syndrome protein 
NES                   0.004   nestin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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