HPS5 25666

Name: HPS5	Sequence: fasta or formatted (1015aa)		NCBI GI: 31657125
Description: Hermansky-Pudlak syndrome 5 isoform b		Referenced in: Integrins Lysosomes and Related Organelles
Other entries for this name: alt prot [1129aa] Hermansky-Pudlak syndrome 5 isoform a alt mRNA [1015aa] Hermansky-Pudlak syndrome 5 isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.8 49 4 C cysteine 3.1 31 2 D aspartate 6.1 62 2 E glutamate 8.6 87 3 F phenylalanine 4.1 42 2 G glycine 4.1 42 2 H histidine 2.5 25 3 I isoleucine 4.5 46 2 K lysine 5.6 57 2 L leucine 13.3 135 3 M methionine 1.7 17 1 N asparagine 2.9 29 1 P proline 4.9 50 3 Q glutamine 3.9 40 2 R arginine 5.4 55 3 S serine 11.0 112 2 T threonine 4.8 49 2 V valine 5.2 53 2 W tryptophan 1.5 15 1 Y tyrosine 1.9 19 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Hermansky-Pudlak syndrome 5 isoform b HPS5 1.000 Hermansky-Pudlak syndrome 5 isoform a HPS5 1.000 Hermansky-Pudlak syndrome 5 isoform b TECPR2 0.031 tectonin beta-propeller repeat containing 2 SYCP2L 0.008 synaptonemal complex protein 2-like FAM114A1 0.007 hypothetical protein LOC92689 SP140 0.006 SP140 nuclear body protein isoform 1 MTMR7 0.005 myotubularin related protein 7 TTBK1 0.005 tau tubulin kinase 1 GTF2F1 0.005 general transcription factor IIF, polypeptide 1, 74... MDM1 0.005 mouse Mdm1 nuclear protein homolog isoform 1 YTHDC1 0.005 splicing factor YT521-B isoform 2 YTHDC1 0.005 splicing factor YT521-B isoform 1 RYR1 0.005 skeletal muscle ryanodine receptor isoform 2 RYR1 0.005 skeletal muscle ryanodine receptor isoform 1 SSRP1 0.005 structure specific recognition protein 1 CHD9 0.005 chromodomain helicase DNA binding protein 9 CHIC1 0.004 cysteine-rich hydrophobic domain 1 RB1CC1 0.004 Rb1-inducible coiled coil protein 1 isoform 2 [Homo... RB1CC1 0.004 Rb1-inducible coiled coil protein 1 isoform 1 [Homo... CCDC62 0.004 coiled-coil domain containing 62 isoform b CCDC62 0.004 coiled-coil domain containing 62 isoform a SETD1B 0.004 SET domain containing 1B NEFM 0.004 neurofilament, medium polypeptide 150kDa isoform 1 ... NEFM 0.004 neurofilament, medium polypeptide 150kDa isoform 2 ... MGEA5 0.004 meningioma expressed antigen 5 (hyaluronidase) isof... MGEA5 0.004 meningioma expressed antigen 5 (hyaluronidase) isofo... C12orf12 0.004 hypothetical protein LOC196477 BLM 0.004 Bloom syndrome protein NES 0.004 nestin Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.