Search of human proteins with 31543184

Search of human proteins with 31543184

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|31543184 three prime histone mRNA exonuclease 1 [Homo
sapiens]
         (349 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|31543184 three prime histone mRNA exonuclease 1 [Homo sapiens]     714   0.0  
gi|218505674 exoribonuclease 2 isoform 2 [Homo sapiens]               141   1e-33
gi|218505680 exoribonuclease 2 isoform 1 [Homo sapiens]               139   5e-33
gi|74136559 prion protein interacting protein [Homo sapiens]          138   8e-33
gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]           37   0.020
gi|197304786 IQ motif and Sec7 domain 1 isoform a [Homo sapiens]       35   0.100
gi|50582989 IQ motif and Sec7 domain 1 isoform b [Homo sapiens]        35   0.100
gi|37595545 PCTAIRE protein kinase 2 [Homo sapiens]                    34   0.22 
gi|239749365 PREDICTED: hypothetical protein XP_002347014 [Homo ...    32   0.85 
gi|72384335 zinc finger protein 311 [Homo sapiens]                     32   1.1  
gi|28872798 CCAAT/enhancer binding protein delta [Homo sapiens]        31   1.4  
gi|25777598 diacylglycerol kinase, delta 130kDa isoform 2 [Homo ...    31   1.4  
gi|4503195 cytochrome P450, family 17 [Homo sapiens]                   31   1.9  
gi|194018513 patched domain containing 3 [Homo sapiens]                31   1.9  
gi|171906606 zinc finger with KRAB and SCAN domains 2 [Homo sapi...    31   1.9  
gi|21040334 B-cell CLL/lymphoma 11B isoform 1 [Homo sapiens]           30   3.2  
gi|12597635 B-cell CLL/lymphoma 11B isoform 2 [Homo sapiens]           30   3.2  
gi|166795250 kinesin family member 2C [Homo sapiens]                   30   4.2  
gi|100814339 coiled-coil domain containing 146 [Homo sapiens]          30   4.2  
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]          29   5.5  
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]          29   5.5  
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]          29   5.5  
gi|197927454 DEK oncogene isoform 2 [Homo sapiens]                     29   7.2  
gi|126090663 zinc finger homeodomain 4 [Homo sapiens]                  29   7.2  
gi|218505835 membrane-associated guanylate kinase-related  3 iso...    29   7.2  
gi|155969695 membrane-associated guanylate kinase-related  3 iso...    29   7.2  
gi|4759212 tubulin-specific chaperone a [Homo sapiens]                 29   7.2  
gi|4507877 vinculin isoform VCL [Homo sapiens]                         28   9.4  
gi|7669550 vinculin isoform meta-VCL [Homo sapiens]                    28   9.4  
gi|7661936 scaffold attachment factor B2 [Homo sapiens]                28   9.4  

>gi|31543184 three prime histone mRNA exonuclease 1 [Homo sapiens]
          Length = 349

 Score =  714 bits (1842), Expect = 0.0
 Identities = 349/349 (100%), Positives = 349/349 (100%)

Query: 1   MEDPQSKEPAGEAVALALLESPRPEGGEEPPRPSPEETQQCKFDGQETKGSKFITSSASD 60
           MEDPQSKEPAGEAVALALLESPRPEGGEEPPRPSPEETQQCKFDGQETKGSKFITSSASD
Sbjct: 1   MEDPQSKEPAGEAVALALLESPRPEGGEEPPRPSPEETQQCKFDGQETKGSKFITSSASD 60

Query: 61  FSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQKLMLKES 120
           FSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQKLMLKES
Sbjct: 61  FSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQKLMLKES 120

Query: 121 NFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINT 180
           NFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINT
Sbjct: 121 NFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINT 180

Query: 181 QLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLN 240
           QLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLN
Sbjct: 181 QLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLN 240

Query: 241 IQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSK 300
           IQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSK
Sbjct: 241 IQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSK 300

Query: 301 NIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPPPQMPHFRK 349
           NIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPPPQMPHFRK
Sbjct: 301 NIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPPPQMPHFRK 349


>gi|218505674 exoribonuclease 2 isoform 2 [Homo sapiens]
          Length = 328

 Score =  141 bits (355), Expect = 1e-33
 Identities = 77/217 (35%), Positives = 122/217 (56%), Gaps = 17/217 (7%)

Query: 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 186
           +DY+ +IDFE+TC          EIIEFP VLLNT T +I+  FQ YV+P+ +  LS+FC
Sbjct: 34  FDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFC 93

Query: 187 ISLTGITQDQVDRADTFPQVLKKVIDWM-KLKE-------------LGTKYKY-SLLTDG 231
           + LTGI Q QVD        L +   W+ K+++               ++ K  + +T  
Sbjct: 94  MELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVTWS 153

Query: 232 SWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGR 291
            WD+   L  +C+  +L  P F   WI++R +Y  FY+  R    L+  L+++G+++ GR
Sbjct: 154 DWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYR--RKPKGLSGALQEVGIEFSGR 211

Query: 292 PHCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLM 328
            H GLDDS+N A +A +M++DGC ++I   ++ G  +
Sbjct: 212 EHSGLDDSRNTALLAWKMIRDGCVMKITRSLNKGPFL 248


>gi|218505680 exoribonuclease 2 isoform 1 [Homo sapiens]
          Length = 691

 Score =  139 bits (349), Expect = 5e-33
 Identities = 76/212 (35%), Positives = 120/212 (56%), Gaps = 17/212 (8%)

Query: 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 186
           +DY+ +IDFE+TC          EIIEFP VLLNT T +I+  FQ YV+P+ +  LS+FC
Sbjct: 34  FDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFC 93

Query: 187 ISLTGITQDQVDRADTFPQVLKKVIDWM-KLKE-------------LGTKYKY-SLLTDG 231
           + LTGI Q QVD        L +   W+ K+++               ++ K  + +T  
Sbjct: 94  MELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVTWS 153

Query: 232 SWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGR 291
            WD+   L  +C+  +L  P F   WI++R +Y  FY+  R    L+  L+++G+++ GR
Sbjct: 154 DWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYR--RKPKGLSGALQEVGIEFSGR 211

Query: 292 PHCGLDDSKNIARIAVRMLQDGCELRINEKMH 323
            H GLDDS+N A +A +M++DGC ++I   ++
Sbjct: 212 EHSGLDDSRNTALLAWKMIRDGCVMKITRSLN 243


>gi|74136559 prion protein interacting protein [Homo sapiens]
          Length = 337

 Score =  138 bits (347), Expect = 8e-33
 Identities = 78/186 (41%), Positives = 107/186 (57%), Gaps = 4/186 (2%)

Query: 121 NFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINT 180
           +F    Y Y  ++DFEATC++  P     EIIEFP++ LN  T+EIE TF  YV+P ++ 
Sbjct: 137 SFPPQRYHYFLVLDFEATCDK--PQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHP 194

Query: 181 QLSDFCISLTGITQDQVDRADTFPQVLKKVIDWM-KLKELGTKYKYSLLTDGSWDMSKFL 239
           QL+ FC  LTGI Q  VD   +  QVL++V +WM K   L    K   +T G WD+   L
Sbjct: 195 QLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVML 254

Query: 240 NIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDS 299
             QCQ   L    + K+WIN++K+Y +F      +  L  M + L + + GRPH G+DD 
Sbjct: 255 PGQCQYLGLPVADYFKQWINLKKAY-SFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDC 313

Query: 300 KNIARI 305
           KNIA I
Sbjct: 314 KNIANI 319


>gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]
          Length = 306

 Score = 37.4 bits (85), Expect = 0.020
 Identities = 38/143 (26%), Positives = 57/143 (39%), Gaps = 24/143 (16%)

Query: 12  EAVALALLESPRPEGGEEPPRPSPEETQQCKFDGQETKGSKFITSSASDFSDPVYKEIAI 71
           E   L L   P PE  EEPPRP           G    GS+       +  +P   E   
Sbjct: 56  EPEELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQ------EEEEEPGLVEGDP 109

Query: 72  TNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQKLM-------------LK 118
            +G I     E ++A++ E + E   +K+     L+N  +KQ  M             ++
Sbjct: 110 GDGAIEDPELEAIKARVREMEEEAEKLKE-----LQNEVEKQMNMSPPPGNAGPVIMSIE 164

Query: 119 ESNFADSYYDYICIIDFEATCEE 141
           E   AD+   Y+  +D+ AT EE
Sbjct: 165 EKMEADARSIYVGNVDYGATAEE 187


>gi|197304786 IQ motif and Sec7 domain 1 isoform a [Homo sapiens]
          Length = 1114

 Score = 35.0 bits (79), Expect = 0.100
 Identities = 32/144 (22%), Positives = 63/144 (43%), Gaps = 13/144 (9%)

Query: 78  RMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQKLMLKESNFADSYYDYICIIDFEA 137
           + +++ L   + E    T  + + L+K  + + + Q    K     +++    CI +   
Sbjct: 570 QFNRDVLDCVVDEMDFSTMELDEALRK-FQAHIRVQGEAQKVERLIEAFSQRYCICNPGV 628

Query: 138 TCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQV 197
             +  NP      I+ F ++LLNT      D +   V+PE   +L DF  +L G+     
Sbjct: 629 VRQFRNPDTIF--ILAFAIILLNT------DMYSPNVKPERKMKLEDFIKNLRGVD---- 676

Query: 198 DRADTFPQVLKKVIDWMKLKELGT 221
           D  D   ++L  + + ++ +EL T
Sbjct: 677 DGEDIPREMLMGIYERIRKRELKT 700


>gi|50582989 IQ motif and Sec7 domain 1 isoform b [Homo sapiens]
          Length = 963

 Score = 35.0 bits (79), Expect = 0.100
 Identities = 32/144 (22%), Positives = 63/144 (43%), Gaps = 13/144 (9%)

Query: 78  RMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQKLMLKESNFADSYYDYICIIDFEA 137
           + +++ L   + E    T  + + L+K  + + + Q    K     +++    CI +   
Sbjct: 584 QFNRDVLDCVVDEMDFSTMELDEALRK-FQAHIRVQGEAQKVERLIEAFSQRYCICNPGV 642

Query: 138 TCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQV 197
             +  NP      I+ F ++LLNT      D +   V+PE   +L DF  +L G+     
Sbjct: 643 VRQFRNPDTIF--ILAFAIILLNT------DMYSPNVKPERKMKLEDFIKNLRGVD---- 690

Query: 198 DRADTFPQVLKKVIDWMKLKELGT 221
           D  D   ++L  + + ++ +EL T
Sbjct: 691 DGEDIPREMLMGIYERIRKRELKT 714


>gi|37595545 PCTAIRE protein kinase 2 [Homo sapiens]
          Length = 523

 Score = 33.9 bits (76), Expect = 0.22
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 6/95 (6%)

Query: 200 ADTFPQVLKKVIDWMKLKELGTKYKYSLLTDG----SWDMSKFLNIQCQLSRLKYPPFAK 255
           + T  + L ++ + M ++E  +K    ++ +G    S  M  FL+        K PP  +
Sbjct: 15  SQTIDESLSELAEQMTIEENSSKDNEPIVKNGRPPTSHSMHSFLHQYT--GSFKKPPLRR 72

Query: 256 KWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDG 290
               I  S G+F  +PR+ ++L I+ E L M  DG
Sbjct: 73  PHSVIGGSLGSFMAMPRNGSRLDIVHENLKMGSDG 107


>gi|239749365 PREDICTED: hypothetical protein XP_002347014 [Homo
           sapiens]
          Length = 190

 Score = 32.0 bits (71), Expect = 0.85
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 9   PAGEAVALALLE--SPRPEGGEEPPRPSPEETQQCKFDGQETKGSKFITS-SASDFSDPV 65
           P  E     LLE  S +PE GE+ PRP  EET      G + KG++F TS     FS P+
Sbjct: 126 PPEEKRLRLLLEGGSAQPEDGEDAPRPGREETG--TQTGGDGKGAEFSTSFEQPRFSHPL 183


>gi|72384335 zinc finger protein 311 [Homo sapiens]
          Length = 666

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 17/122 (13%)

Query: 1   MEDPQSKEPAGEAVALALLESPRPEGGEEP-PRPSPEETQQCKFDGQETKGSKFITSSAS 59
           ++DPQ +E          L    P   ++  P      +QQ  F+  E    KF +    
Sbjct: 124 VQDPQDRES---------LSCSYPVSADKMWPENEKASSQQEIFENGEAYWMKFNSLLKV 174

Query: 60  DFSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQKLMLKE 119
           D  DP  +E+ + +  +    +  +R KL E   E  G ++V  K+ KN    QK++ K 
Sbjct: 175 DSRDPKVREVCVQDVKLENQWETSIREKLRE---EKEGSEEVTCKKGKN----QKVLSKN 227

Query: 120 SN 121
            N
Sbjct: 228 LN 229


>gi|28872798 CCAAT/enhancer binding protein delta [Homo sapiens]
          Length = 269

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 10  AGEAVALALLESPRPEGGEEPPRPSPEETQQCKFDGQETKGSKFITSSASDFSDPVYKEI 69
           A   V+LA    P P    EPPR SP +T       +++ G +       D   P Y++ 
Sbjct: 143 AQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPGPAREKSAGKR-----GPDRGSPEYRQR 197

Query: 70  AITNGCINRMSKEELRAKLSEFK 92
              N    R S+++ + +  E +
Sbjct: 198 RERNNIAVRKSRDKAKRRNQEMQ 220


>gi|25777598 diacylglycerol kinase, delta 130kDa isoform 2 [Homo
          sapiens]
          Length = 1214

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 21 SPRPEGGEEPPRPSPEETQQCKFDGQETKGSKFITSSASDFSDPVYKEIAITNGCINRMS 80
          +P P   + PP P PEE+   + + +     K I   ++  S  + ++  I  G + + +
Sbjct: 7  APPPGPPQPPPPPPPEESSDSEPEAEPGSPQKLIRKVST--SGQIRQKTIIKEGMLTKQN 64

Query: 81 KEELRAKLSEFKLETR 96
              R+K   FKL  R
Sbjct: 65 NSFQRSKRRYFKLRGR 80


>gi|4503195 cytochrome P450, family 17 [Homo sapiens]
          Length = 508

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 19/120 (15%)

Query: 213 WMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPR 272
           W K +  G KY  SLL+        FL         ++      +  ++K YG  Y V R
Sbjct: 17  WPKRRCPGAKYPKSLLSLPLVGSLPFLP--------RHGHMHNNFFKLQKKYGPIYSV-R 67

Query: 273 SQTKLTIM----------LEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDGCELRINEKM 322
             TK T++          L K G D+ GRP     D  +  R  +     G   +++ ++
Sbjct: 68  MGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLDIASNNRKGIAFADSGAHWQLHRRL 127


>gi|194018513 patched domain containing 3 [Homo sapiens]
          Length = 767

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 4  PQSKEPAGEAVALALLESPRPEGGEEPPRPS 34
          P+S EP+G   +    ++P PEG + PPRPS
Sbjct: 51 PKSPEPSGPLASEQ--DAPLPEGDDAPPRPS 79


>gi|171906606 zinc finger with KRAB and SCAN domains 2 [Homo
           sapiens]
          Length = 967

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 9/73 (12%)

Query: 12  EAVALALLESPRPEGGEEPPRPSPEETQQCKFDGQETKGSKFITSSASDFSDPVYKEIAI 71
           +A+  +   +P P   EE P PS +E    + + QE  G +          +   +E  I
Sbjct: 580 DALINSRASAPSPSTPEEVPSPSRQERGGIEVEPQEPTGWE---------PEETSQEAVI 630

Query: 72  TNGCINRMSKEEL 84
            + C  RMS+EE+
Sbjct: 631 EDSCSERMSEEEI 643


>gi|21040334 B-cell CLL/lymphoma 11B isoform 1 [Homo sapiens]
          Length = 894

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 22  PRPEGGEEPPRPSPEETQQCKFDGQETK-GSKFITSSASDFSDPVYK 67
           P P GG  PP+P P +++ C+F G+  K  S  I    S   +  YK
Sbjct: 411 PMPPGGTPPPQP-PAKSKSCEFCGKTFKFQSNLIVHRRSHTGEKPYK 456


>gi|12597635 B-cell CLL/lymphoma 11B isoform 2 [Homo sapiens]
          Length = 823

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 22  PRPEGGEEPPRPSPEETQQCKFDGQETK-GSKFITSSASDFSDPVYK 67
           P P GG  PP+P P +++ C+F G+  K  S  I    S   +  YK
Sbjct: 340 PMPPGGTPPPQP-PAKSKSCEFCGKTFKFQSNLIVHRRSHTGEKPYK 385


>gi|166795250 kinesin family member 2C [Homo sapiens]
          Length = 725

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 13/53 (24%), Positives = 31/53 (58%)

Query: 177 EINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLT 229
           E+++Q+S F  ++T I + +    +   +++++  DW++L E+  +  Y L T
Sbjct: 626 ELSSQMSSFNEAMTQIRELEEKAMEELKEIIQQGPDWLELSEMTEQPDYDLET 678


>gi|100814339 coiled-coil domain containing 146 [Homo sapiens]
          Length = 955

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 76  INRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQK 114
           I R S EELR ++ + KLE + +++ L  + K   K+QK
Sbjct: 177 ILRESTEELRKEIMQKKLEIKNLREDLASKQKQLLKEQK 215


>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
          Length = 2790

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 9/52 (17%)

Query: 16   LALLESPRP---EGGEEPPRPSPEETQQCKFDGQETKGSKFITSSASDFSDP 64
            L LL  P P   EG EEPP+ SP E++ C     +        SSAS  ++P
Sbjct: 2214 LPLLPPPPPSEEEGPEEPPKASP-ESEACSLSAGDLS-----DSSASSLAEP 2259


>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
          Length = 2706

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 9/52 (17%)

Query: 16   LALLESPRP---EGGEEPPRPSPEETQQCKFDGQETKGSKFITSSASDFSDP 64
            L LL  P P   EG EEPP+ SP E++ C     +        SSAS  ++P
Sbjct: 2130 LPLLPPPPPSEEEGPEEPPKASP-ESEACSLSAGDLS-----DSSASSLAEP 2175


>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
          Length = 2706

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 9/52 (17%)

Query: 16   LALLESPRP---EGGEEPPRPSPEETQQCKFDGQETKGSKFITSSASDFSDP 64
            L LL  P P   EG EEPP+ SP E++ C     +        SSAS  ++P
Sbjct: 2130 LPLLPPPPPSEEEGPEEPPKASP-ESEACSLSAGDLS-----DSSASSLAEP 2175


>gi|197927454 DEK oncogene isoform 2 [Homo sapiens]
          Length = 341

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 22/141 (15%)

Query: 19  LESPRPEGGEEPPRPSPEETQQCKFDGQE----TKGSKFITSSASDFSDPVYKEIAITNG 74
           +  PR E  EE      EE ++ K  GQ+     +   F++   +D    ++K +    G
Sbjct: 25  MPGPREESEEEEDEDDEEEEEEEKGKGQKLCEIERIHFFLSKKKTDELRNLHKLLYNRPG 84

Query: 75  CINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQKLMLKESNFADSYYDYIC-II 133
            ++ + K     + S F  E   V+          YKK++ MLK+  F ++    IC ++
Sbjct: 85  TVSSLKKNV--GQFSGFPFEKGSVQ----------YKKKEEMLKK--FRNAMLKSICEVL 130

Query: 134 DFEATCEEGNPPEFVHEIIEF 154
           D E     G   E V  I+ F
Sbjct: 131 DLE---RSGVNSELVKRILNF 148


>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
          Length = 3571

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 10   AGEAVALALLESPRPEGGEEPPRPS-PEETQQCKFDGQETKGSKFITSSASDFSDP 64
            +G   +  L+ SP+PE  +  P+P  P E  +       ++G+K     AS  SDP
Sbjct: 2338 SGSGTSTPLIPSPKPEPEKTSPKPEYPAEKPKQSDPSPPSQGTKPALPLASTSSDP 2393


>gi|218505835 membrane-associated guanylate kinase-related  3
           isoform 1 [Homo sapiens]
          Length = 1481

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 3   DPQSKEPAGEAVALALLESPRPEGGEEPPRPSPEETQQCKFDGQETKGSKFITSSASDFS 62
           + Q ++ + +A       SPR    E P RP+P+E        +E +G  F+  ++ +  
Sbjct: 814 EKQPEDDSSQAFISTQNGSPRLNRAEVPARPAPQEPYDVVLQRKENEGFGFVILTSKNKP 873

Query: 63  DP 64
            P
Sbjct: 874 PP 875


>gi|155969695 membrane-associated guanylate kinase-related  3
           isoform 2 [Homo sapiens]
          Length = 1125

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 3   DPQSKEPAGEAVALALLESPRPEGGEEPPRPSPEETQQCKFDGQETKGSKFITSSASDFS 62
           + Q ++ + +A       SPR    E P RP+P+E        +E +G  F+  ++ +  
Sbjct: 814 EKQPEDDSSQAFISTQNGSPRLNRAEVPARPAPQEPYDVVLQRKENEGFGFVILTSKNKP 873

Query: 63  DP 64
            P
Sbjct: 874 PP 875


>gi|4759212 tubulin-specific chaperone a [Homo sapiens]
          Length = 108

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 10/64 (15%)

Query: 62  SDPVYKEIAITNGCINRMSKE----ELRAKLSEFKLETRGVKDVLKKRLKNY-YKKQKLM 116
           +DP  ++I I  G + R+ KE    E  AK  E K+E    +D      +NY  KKQ  +
Sbjct: 2   ADPRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDG-----ENYDIKKQAEI 56

Query: 117 LKES 120
           L+ES
Sbjct: 57  LQES 60


>gi|4507877 vinculin isoform VCL [Homo sapiens]
          Length = 1066

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 16  LALLESPRPEGGEEPPRPSPEETQQCKFDGQE 47
           LA  + P PEG   PPRP P E +  +F  Q+
Sbjct: 858 LAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQK 889


>gi|7669550 vinculin isoform meta-VCL [Homo sapiens]
          Length = 1134

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 16  LALLESPRPEGGEEPPRPSPEETQQCKFDGQE 47
           LA  + P PEG   PPRP P E +  +F  Q+
Sbjct: 858 LAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQK 889


>gi|7661936 scaffold attachment factor B2 [Homo sapiens]
          Length = 953

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 83  ELRAKLSEFKLETRGVKDVLKKRLKNYYKKQ 113
           +LRA+L +  L+T G K VL +RLK   K++
Sbjct: 37  DLRAELKKRNLDTGGNKSVLMERLKKAVKEE 67


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,858,805
Number of Sequences: 37866
Number of extensions: 688781
Number of successful extensions: 2823
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2785
Number of HSP's gapped (non-prelim): 48
length of query: 349
length of database: 18,247,518
effective HSP length: 103
effective length of query: 246
effective length of database: 14,347,320
effective search space: 3529440720
effective search space used: 3529440720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.