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Search of human proteins with 30795182
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30795182 zinc finger, FYVE domain containing 1 isoform 2
[Homo sapiens]
(362 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30795182 zinc finger, FYVE domain containing 1 isoform 2 [Hom... 787 0.0
gi|30795180 zinc finger, FYVE domain containing 1 isoform 1 [Hom... 787 0.0
gi|94721330 RUN and FYVE domain-containing 1 isoform b [Homo sap... 74 3e-13
gi|94721332 RUN and FYVE domain-containing 1 isoform b [Homo sap... 74 3e-13
gi|94721336 RUN and FYVE domain-containing 1 isoform a [Homo sap... 74 3e-13
gi|109240556 RUN and FYVE domain-containing 2 isoform a [Homo sa... 68 1e-11
gi|217272865 myotubularin related protein 4 [Homo sapiens] 67 2e-11
gi|23510389 myotubularin-related protein 3 isoform b [Homo sapiens] 65 7e-11
gi|10835109 myotubularin-related protein 3 isoform c [Homo sapiens] 65 7e-11
gi|4758528 hepatocyte growth factor-regulated tyrosine kinase su... 65 9e-11
gi|55741864 zinc finger, FYVE domain containing 28 [Homo sapiens] 65 9e-11
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 61 1e-09
gi|121583483 phosphatidylinositol-3-phosphate 5-kinase type III ... 61 2e-09
gi|13129054 zinc finger, FYVE domain containing 21 [Homo sapiens] 58 1e-08
gi|23510387 myotubularin-related protein 3 isoform a [Homo sapiens] 58 2e-08
gi|31317270 WD repeat and FYVE domain containing 3 isoform 3 [Ho... 57 2e-08
gi|31317272 WD repeat and FYVE domain containing 3 isoform 1 [Ho... 57 2e-08
gi|157426866 zinc finger, FYVE domain containing 16 [Homo sapiens] 57 3e-08
gi|157426864 zinc finger, FYVE domain containing 16 [Homo sapiens] 57 3e-08
gi|13375827 phafin 2 [Homo sapiens] 55 7e-08
gi|38202205 zinc finger, FYVE domain containing 26 [Homo sapiens] 54 3e-07
gi|154240686 FYVE, RhoGEF and PH domain containing 6 [Homo sapiens] 54 3e-07
gi|18482373 WD repeat and FYVE domain containing 1 [Homo sapiens] 53 4e-07
gi|47717112 zinc finger, FYVE domain containing 9 isoform 1 [Hom... 53 5e-07
gi|16418439 WD repeat and FYVE domain containing 2 [Homo sapiens] 53 5e-07
gi|47717106 zinc finger, FYVE domain containing 9 isoform 3 [Hom... 52 8e-07
gi|6552337 zinc finger, FYVE domain containing 9 isoform 2 [Homo... 52 8e-07
gi|194018497 FYVE, RhoGEF and PH domain containing 5 [Homo sapiens] 52 8e-07
gi|153791377 apoptosis-inducing protein D [Homo sapiens] 51 1e-06
gi|157738667 FYVE and coiled-coil domain containing 1 [Homo sapi... 51 2e-06
>gi|30795182 zinc finger, FYVE domain containing 1 isoform 2 [Homo
sapiens]
Length = 362
Score = 787 bits (2033), Expect = 0.0
Identities = 362/362 (100%), Positives = 362/362 (100%)
Query: 1 MAHSSFFPDEYFTCSSLCLSCGVGCKKSMNHGKEGVPHEAKSRCRYSHQYDNRVYTCKAC 60
MAHSSFFPDEYFTCSSLCLSCGVGCKKSMNHGKEGVPHEAKSRCRYSHQYDNRVYTCKAC
Sbjct: 1 MAHSSFFPDEYFTCSSLCLSCGVGCKKSMNHGKEGVPHEAKSRCRYSHQYDNRVYTCKAC 60
Query: 61 YERGEEVSVVPKTSASTDSPWMGLAKYAWSGYVIECPNCGVVYRSRQYWFGNQDPVDTVV 120
YERGEEVSVVPKTSASTDSPWMGLAKYAWSGYVIECPNCGVVYRSRQYWFGNQDPVDTVV
Sbjct: 61 YERGEEVSVVPKTSASTDSPWMGLAKYAWSGYVIECPNCGVVYRSRQYWFGNQDPVDTVV 120
Query: 121 RTEIVHVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAYW 180
RTEIVHVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAYW
Sbjct: 121 RTEIVHVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAYW 180
Query: 181 RPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCY 240
RPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCY
Sbjct: 181 RPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCY 240
Query: 241 EARNVQLAVTEAQVDDEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPD 300
EARNVQLAVTEAQVDDEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPD
Sbjct: 241 EARNVQLAVTEAQVDDEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPD 300
Query: 301 HEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPG 360
HEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPG
Sbjct: 301 HEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPG 360
Query: 361 DL 362
DL
Sbjct: 361 DL 362
>gi|30795180 zinc finger, FYVE domain containing 1 isoform 1 [Homo
sapiens]
Length = 777
Score = 787 bits (2033), Expect = 0.0
Identities = 362/362 (100%), Positives = 362/362 (100%)
Query: 1 MAHSSFFPDEYFTCSSLCLSCGVGCKKSMNHGKEGVPHEAKSRCRYSHQYDNRVYTCKAC 60
MAHSSFFPDEYFTCSSLCLSCGVGCKKSMNHGKEGVPHEAKSRCRYSHQYDNRVYTCKAC
Sbjct: 416 MAHSSFFPDEYFTCSSLCLSCGVGCKKSMNHGKEGVPHEAKSRCRYSHQYDNRVYTCKAC 475
Query: 61 YERGEEVSVVPKTSASTDSPWMGLAKYAWSGYVIECPNCGVVYRSRQYWFGNQDPVDTVV 120
YERGEEVSVVPKTSASTDSPWMGLAKYAWSGYVIECPNCGVVYRSRQYWFGNQDPVDTVV
Sbjct: 476 YERGEEVSVVPKTSASTDSPWMGLAKYAWSGYVIECPNCGVVYRSRQYWFGNQDPVDTVV 535
Query: 121 RTEIVHVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAYW 180
RTEIVHVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAYW
Sbjct: 536 RTEIVHVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAYW 595
Query: 181 RPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCY 240
RPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCY
Sbjct: 596 RPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCY 655
Query: 241 EARNVQLAVTEAQVDDEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPD 300
EARNVQLAVTEAQVDDEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPD
Sbjct: 656 EARNVQLAVTEAQVDDEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPD 715
Query: 301 HEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPG 360
HEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPG
Sbjct: 716 HEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPG 775
Query: 361 DL 362
DL
Sbjct: 776 DL 777
>gi|94721330 RUN and FYVE domain-containing 1 isoform b [Homo
sapiens]
Length = 600
Score = 73.6 bits (179), Expect = 3e-13
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 288 VKDAARPAYWVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDH 347
V A + W+ D E HC C KEFSI KHHCR CG FC+ CS + A+PS +
Sbjct: 522 VNQALKGHAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPS--YPK 579
Query: 348 PVRVCFNCN 356
PVRVC +C+
Sbjct: 580 PVRVCDSCH 588
Score = 60.5 bits (145), Expect = 2e-09
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 180 WRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNC 239
W + + C +C F + KHHCR CG FC++CSS +P P PVRVCD+C
Sbjct: 531 WLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSY---PKPVRVCDSC 587
Query: 240 Y 240
+
Sbjct: 588 H 588
>gi|94721332 RUN and FYVE domain-containing 1 isoform b [Homo
sapiens]
Length = 600
Score = 73.6 bits (179), Expect = 3e-13
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 288 VKDAARPAYWVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDH 347
V A + W+ D E HC C KEFSI KHHCR CG FC+ CS + A+PS +
Sbjct: 522 VNQALKGHAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPS--YPK 579
Query: 348 PVRVCFNCN 356
PVRVC +C+
Sbjct: 580 PVRVCDSCH 588
Score = 60.5 bits (145), Expect = 2e-09
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 180 WRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNC 239
W + + C +C F + KHHCR CG FC++CSS +P P PVRVCD+C
Sbjct: 531 WLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSY---PKPVRVCDSC 587
Query: 240 Y 240
+
Sbjct: 588 H 588
>gi|94721336 RUN and FYVE domain-containing 1 isoform a [Homo
sapiens]
Length = 708
Score = 73.6 bits (179), Expect = 3e-13
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 288 VKDAARPAYWVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDH 347
V A + W+ D E HC C KEFSI KHHCR CG FC+ CS + A+PS +
Sbjct: 630 VNQALKGHAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPS--YPK 687
Query: 348 PVRVCFNCN 356
PVRVC +C+
Sbjct: 688 PVRVCDSCH 696
Score = 60.5 bits (145), Expect = 2e-09
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 180 WRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNC 239
W + + C +C F + KHHCR CG FC++CSS +P P PVRVCD+C
Sbjct: 639 WLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSY---PKPVRVCDSC 695
Query: 240 Y 240
+
Sbjct: 696 H 696
>gi|109240556 RUN and FYVE domain-containing 2 isoform a [Homo
sapiens]
Length = 641
Score = 67.8 bits (164), Expect = 1e-11
Identities = 29/60 (48%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 297 WVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCN 356
W+ D E HC C KEFS+ KHHCR CG+ FC+ CS + +PS PVRVC +C+
Sbjct: 572 WLKDKEATHCKLCEKEFSLSKRKHHCRNCGEIFCNACSDNELPLPSS--PKPVRVCDSCH 629
Score = 63.5 bits (153), Expect = 3e-10
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 180 WRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNC 239
W + + C C F + KHHCR CGE FC++CS P+P P PVRVCD+C
Sbjct: 572 WLKDKEATHCKLCEKEFSLSKRKHHCRNCGEIFCNACSDNELPLPS---SPKPVRVCDSC 628
Query: 240 Y 240
+
Sbjct: 629 H 629
>gi|217272865 myotubularin related protein 4 [Homo sapiens]
Length = 1195
Score = 67.0 bits (162), Expect = 2e-11
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 297 WVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNC 355
WVPDH HC+NC EF + +HHCR CG FC C H + +P + PV VC +C
Sbjct: 1111 WVPDHMASHCYNCDCEFWLAKRRHHCRNCGNVFCAGCCHLKLPIPDQQLYDPVLVCNSC 1169
Score = 51.6 bits (122), Expect = 1e-06
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 180 WRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNC 239
W P+ C C F +HHCR CG FC C P+P++ PV VC++C
Sbjct: 1111 WVPDHMASHCYNCDCEFWLAKRRHHCRNCGNVFCAGCCHLKLPIPDQQLYD-PVLVCNSC 1169
Query: 240 YEARNVQLA 248
YE V A
Sbjct: 1170 YEHIQVSRA 1178
>gi|23510389 myotubularin-related protein 3 isoform b [Homo sapiens]
Length = 1161
Score = 65.5 bits (158), Expect = 7e-11
Identities = 26/59 (44%), Positives = 33/59 (55%)
Query: 297 WVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNC 355
W+PDH HC+ C F + KHHCR CG FC C + + VPS+ P RVC +C
Sbjct: 1079 WLPDHLAAHCYACDSAFWLASRKHHCRNCGNVFCSSCCNQKVPVPSQQLFEPSRVCKSC 1137
Score = 55.8 bits (133), Expect = 6e-08
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 180 WRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNC 239
W P+ C C ++F KHHCR CG FC SC ++ PVP + P RVC +C
Sbjct: 1079 WLPDHLAAHCYACDSAFWLASRKHHCRNCGNVFCSSCCNQKVPVPSQQLF-EPSRVCKSC 1137
Query: 240 YEARNVQLAVTEAQVD 255
Y + + + + ++D
Sbjct: 1138 YSSLHPTSSSIDLELD 1153
>gi|10835109 myotubularin-related protein 3 isoform c [Homo sapiens]
Length = 1198
Score = 65.5 bits (158), Expect = 7e-11
Identities = 26/59 (44%), Positives = 33/59 (55%)
Query: 297 WVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNC 355
W+PDH HC+ C F + KHHCR CG FC C + + VPS+ P RVC +C
Sbjct: 1116 WLPDHLAAHCYACDSAFWLASRKHHCRNCGNVFCSSCCNQKVPVPSQQLFEPSRVCKSC 1174
Score = 55.8 bits (133), Expect = 6e-08
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 180 WRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNC 239
W P+ C C ++F KHHCR CG FC SC ++ PVP + P RVC +C
Sbjct: 1116 WLPDHLAAHCYACDSAFWLASRKHHCRNCGNVFCSSCCNQKVPVPSQQLF-EPSRVCKSC 1174
Query: 240 YEARNVQLAVTEAQVD 255
Y + + + + ++D
Sbjct: 1175 YSSLHPTSSSIDLELD 1190
>gi|4758528 hepatocyte growth factor-regulated tyrosine kinase
substrate [Homo sapiens]
Length = 777
Score = 65.1 bits (157), Expect = 9e-11
Identities = 30/65 (46%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 291 AARPAYWVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVR 350
A R WV E CH CR +F + KHHCRACGQ FC +CS +P G + VR
Sbjct: 154 AERAPDWVDAEE---CHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVR 210
Query: 351 VCFNC 355
VC C
Sbjct: 211 VCEPC 215
Score = 59.7 bits (143), Expect = 4e-09
Identities = 27/56 (48%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 189 CNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCYEARN 244
C++C F KHHCRACG+ FC CSSK +P+ G VRVC+ CYE N
Sbjct: 166 CHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGI-EKEVRVCEPCYEQLN 220
>gi|55741864 zinc finger, FYVE domain containing 28 [Homo sapiens]
Length = 887
Score = 65.1 bits (157), Expect = 9e-11
Identities = 28/66 (42%), Positives = 35/66 (53%)
Query: 290 DAARPAYWVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPV 349
D P WVPD C C+ F++ KHHCR+CG+ FC CS +P G PV
Sbjct: 807 DFEDPPEWVPDEACGFCTACKAPFTVIRRKHHCRSCGKIFCSRCSSHSAPLPRYGQVKPV 866
Query: 350 RVCFNC 355
RVC +C
Sbjct: 867 RVCTHC 872
Score = 61.6 bits (148), Expect = 1e-09
Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 177 PAYWRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVC 236
P W P+ C C F KHHCR+CG+ FC CSS + P+P G PVRVC
Sbjct: 811 PPEWVPDEACGFCTACKAPFTVIRRKHHCRSCGKIFCSRCSSHSAPLPRYG-QVKPVRVC 869
Query: 237 DNCY 240
+CY
Sbjct: 870 THCY 873
>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
Length = 1411
Score = 61.2 bits (147), Expect = 1e-09
Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 297 WVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNC 355
W D+E+ +C C K FS+ + +HHCR CG FC ECS PS PVRVC C
Sbjct: 1349 WAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSS--KKPVRVCDAC 1405
Score = 56.2 bits (134), Expect = 4e-08
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 180 WRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNC 239
W ++++ +C C F +HHCR CG FC CS+K P PVRVCD C
Sbjct: 1349 WAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPS---SKKPVRVCDAC 1405
Query: 240 Y 240
+
Sbjct: 1406 F 1406
>gi|121583483 phosphatidylinositol-3-phosphate 5-kinase type III
isoform 2 [Homo sapiens]
Length = 2098
Score = 60.8 bits (146), Expect = 2e-09
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 282 DIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVP 341
+I G +D+ YW+PD + C++C ++F+ +HHCR CGQ FC C +
Sbjct: 140 EIMEGKSQDSDLKQYWMPDSQCKECYDCSEKFTTFRRRHHCRLCGQIFCSRCCNQEIPGK 199
Query: 342 SRGWDHPVRVCFNCNK 357
G+ +R C C K
Sbjct: 200 FMGYTGDLRACTYCRK 215
Score = 51.6 bits (122), Expect = 1e-06
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 179 YWRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDN 238
YW P+SQ C C+ F +HHCR CG+ FC C ++ P G+ +R C
Sbjct: 154 YWMPDSQCKECYDCSEKFTTFRRRHHCRLCGQIFCSRCCNQEIPGKFMGY-TGDLRACTY 212
Query: 239 C 239
C
Sbjct: 213 C 213
>gi|13129054 zinc finger, FYVE domain containing 21 [Homo sapiens]
Length = 234
Score = 58.2 bits (139), Expect = 1e-08
Identities = 24/59 (40%), Positives = 29/59 (49%)
Query: 297 WVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNC 355
WVPD E C C +F KHHCR CG+ FCD C + + + PVR C C
Sbjct: 41 WVPDKECRRCMQCDAKFDFLTRKHHCRRCGKCFCDRCCSQKVPLRRMCFVDPVRQCAEC 99
Score = 51.2 bits (121), Expect = 1e-06
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 180 WRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNC 239
W P+ + C +C F KHHCR CG+ FCD C S+ P+ R PVR C C
Sbjct: 41 WVPDKECRRCMQCDAKFDFLTRKHHCRRCGKCFCDRCCSQKVPL-RRMCFVDPVRQCAEC 99
>gi|23510387 myotubularin-related protein 3 isoform a [Homo sapiens]
Length = 1170
Score = 57.8 bits (138), Expect = 2e-08
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 297 WVPDHEILHCHNCRKEFSIKLSKHHCR---------ACGQGFCDECSHDRRAVPSRGWDH 347
W+PDH HC+ C F + KHHCR CG FC C + + VPS+
Sbjct: 1079 WLPDHLAAHCYACDSAFWLASRKHHCRDTDRVDQTWNCGNVFCSSCCNQKVPVPSQQLFE 1138
Query: 348 PVRVCFNC 355
P RVC +C
Sbjct: 1139 PSRVCKSC 1146
Score = 48.1 bits (113), Expect = 1e-05
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 180 WRPNSQILSCNKCATSFKDNDTKHHCRA---------CGEGFCDSCSSKTRPVPERGWGP 230
W P+ C C ++F KHHCR CG FC SC ++ PVP +
Sbjct: 1079 WLPDHLAAHCYACDSAFWLASRKHHCRDTDRVDQTWNCGNVFCSSCCNQKVPVPSQQLF- 1137
Query: 231 APVRVCDNCYEARNVQLAVTEAQVD 255
P RVC +CY + + + + ++D
Sbjct: 1138 EPSRVCKSCYSSLHPTSSSIDLELD 1162
>gi|31317270 WD repeat and FYVE domain containing 3 isoform 3 [Homo
sapiens]
Length = 281
Score = 57.4 bits (137), Expect = 2e-08
Identities = 25/60 (41%), Positives = 31/60 (51%)
Query: 296 YWVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNC 355
+WV D C C FS+ +HHCR CGQ FC +CS + + PVRVC NC
Sbjct: 205 HWVKDEGGDSCSGCSVRFSLTERRHHCRNCGQLFCQKCSRFQSEIKRLKISSPVRVCQNC 264
Score = 55.8 bits (133), Expect = 6e-08
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 136 KDNNNAAQRLLDGMNFMAQSVSELSLGPTKA-VTSW-LTDQ---IAPAYWRPNSQILSCN 190
KDN + A+ G++ + S + +G ++ V SW ++DQ A +W + SC+
Sbjct: 160 KDNAHPAEVTALGIS---KDHSRILVGDSRGRVFSWSVSDQPGRSAADHWVKDEGGDSCS 216
Query: 191 KCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCY 240
C+ F + +HHCR CG+ FC CS + +R +PVRVC NCY
Sbjct: 217 GCSVRFSLTERRHHCRNCGQLFCQKCSRFQSEI-KRLKISSPVRVCQNCY 265
>gi|31317272 WD repeat and FYVE domain containing 3 isoform 1 [Homo
sapiens]
Length = 3526
Score = 57.4 bits (137), Expect = 2e-08
Identities = 25/60 (41%), Positives = 31/60 (51%)
Query: 296 YWVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNC 355
+WV D C C FS+ +HHCR CGQ FC +CS + + PVRVC NC
Sbjct: 3450 HWVKDEGGDSCSGCSVRFSLTERRHHCRNCGQLFCQKCSRFQSEIKRLKISSPVRVCQNC 3509
Score = 55.8 bits (133), Expect = 6e-08
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 136 KDNNNAAQRLLDGMNFMAQSVSELSLGPTKA-VTSW-LTDQ---IAPAYWRPNSQILSCN 190
KDN + A+ G++ + S + +G ++ V SW ++DQ A +W + SC+
Sbjct: 3405 KDNAHPAEVTALGIS---KDHSRILVGDSRGRVFSWSVSDQPGRSAADHWVKDEGGDSCS 3461
Query: 191 KCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCY 240
C+ F + +HHCR CG+ FC CS + +R +PVRVC NCY
Sbjct: 3462 GCSVRFSLTERRHHCRNCGQLFCQKCSRFQSEI-KRLKISSPVRVCQNCY 3510
Score = 30.0 bits (66), Expect = 3.4
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 112 NQDPVDTVVRTEIVHVWPGTDGFLKDNNNAAQRLLD------GMNFMAQSVSEL 159
N D + EIV ++ G FLKD+++ +Q LLD G NF+ + L
Sbjct: 267 NMQQSDDLSPLEIVEMFAGLSCFLKDSSDVSQTLLDDFRIWQGYNFLCDLLLRL 320
>gi|157426866 zinc finger, FYVE domain containing 16 [Homo sapiens]
Length = 1539
Score = 56.6 bits (135), Expect = 3e-08
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 286 GLVKDAARPAYWVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGW 345
GLV +P WVPD E +C NC+ +F+ +HHCRACG+ FC C + R +
Sbjct: 734 GLVLGQKQPT-WVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCN--RKCKLQYL 790
Query: 346 DHPVRVCFNC 355
+ RVC C
Sbjct: 791 EKEARVCVVC 800
Score = 48.9 bits (115), Expect = 7e-06
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 180 WRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNC 239
W P+S+ +C C F +HHCRACG+ FC C ++ + + RVC C
Sbjct: 744 WVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQ---YLEKEARVCVVC 800
Query: 240 YE 241
YE
Sbjct: 801 YE 802
>gi|157426864 zinc finger, FYVE domain containing 16 [Homo sapiens]
Length = 1539
Score = 56.6 bits (135), Expect = 3e-08
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 286 GLVKDAARPAYWVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGW 345
GLV +P WVPD E +C NC+ +F+ +HHCRACG+ FC C + R +
Sbjct: 734 GLVLGQKQPT-WVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCN--RKCKLQYL 790
Query: 346 DHPVRVCFNC 355
+ RVC C
Sbjct: 791 EKEARVCVVC 800
Score = 48.9 bits (115), Expect = 7e-06
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 180 WRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNC 239
W P+S+ +C C F +HHCRACG+ FC C ++ + + RVC C
Sbjct: 744 WVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQ---YLEKEARVCVVC 800
Query: 240 YE 241
YE
Sbjct: 801 YE 802
>gi|13375827 phafin 2 [Homo sapiens]
Length = 249
Score = 55.5 bits (132), Expect = 7e-08
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 272 NTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRK-EFSIKLSKHHCRACGQGFC 330
N + VT + G A WVPD E C C+K +F+ +HHCR CG C
Sbjct: 124 NHINKCVTDLLSKSGKTPSNEHAAVWVPDSEATVCMRCQKAKFTPVNRRHHCRKCGFVVC 183
Query: 331 DECSHDRRAVPSRGWDHPVRVCFNC 355
CS R +PS+ PVR+C C
Sbjct: 184 GPCSEKRFLLPSQS-SKPVRICDFC 207
Score = 53.5 bits (127), Expect = 3e-07
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 178 AYWRPNSQILSCNKCATS-FKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVC 236
A W P+S+ C +C + F + +HHCR CG C CS K +P + PVR+C
Sbjct: 147 AVWVPDSEATVCMRCQKAKFTPVNRRHHCRKCGFVVCGPCSEKRFLLPSQ--SSKPVRIC 204
Query: 237 DNCYE 241
D CY+
Sbjct: 205 DFCYD 209
>gi|38202205 zinc finger, FYVE domain containing 26 [Homo sapiens]
Length = 2539
Score = 53.5 bits (127), Expect = 3e-07
Identities = 33/93 (35%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 155 SVSELSLGPTKAVTSWLTDQIAPA--YWRPNSQILSCNKCATS-FKDNDTKHHCRACGEG 211
S+ E S PT+ ++ PA W P+ C C F + +HHCR CG
Sbjct: 1782 SLRERSFPPTQPSQEFVPPATPPARHQWVPDETESICMVCCREHFTMFNRRHHCRRCGRL 1841
Query: 212 FCDSCSSKTRPVPERGWGPAPVRVCDNCYEARN 244
C SCS+K V G P RVCD CY N
Sbjct: 1842 VCSSCSTKKMVV--EGCRENPARVCDQCYSYCN 1872
Score = 47.0 bits (110), Expect = 3e-05
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 288 VKDAARPA--YWVPDHEILHCHNC-RKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRG 344
V A PA WVPD C C R+ F++ +HHCR CG+ C CS ++ V
Sbjct: 1798 VPPATPPARHQWVPDETESICMVCCREHFTMFNRRHHCRRCGRLVCSSCS-TKKMVVEGC 1856
Query: 345 WDHPVRVCFNC 355
++P RVC C
Sbjct: 1857 RENPARVCDQC 1867
>gi|154240686 FYVE, RhoGEF and PH domain containing 6 [Homo sapiens]
Length = 1430
Score = 53.5 bits (127), Expect = 3e-07
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 284 PLGLVKDAARPAYWVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSR 343
PLG ++ W+PD C C EF++ +HHCRACG+ C CS ++ +
Sbjct: 1211 PLG-----SKAPIWIPDTRATMCMICTSEFTLTWRRHHCRACGKIVCQACSSNKYGLDYL 1265
Query: 344 GWDHPVRVCFNC 355
+ P RVC +C
Sbjct: 1266 K-NQPARVCEHC 1276
Score = 48.9 bits (115), Expect = 7e-06
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 180 WRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNC 239
W P+++ C C + F +HHCRACG+ C +CSS + PA RVC++C
Sbjct: 1219 WIPDTRATMCMICTSEFTLTWRRHHCRACGKIVCQACSSNKYGLDYLKNQPA--RVCEHC 1276
Query: 240 YE 241
++
Sbjct: 1277 FQ 1278
>gi|18482373 WD repeat and FYVE domain containing 1 [Homo sapiens]
Length = 410
Score = 53.1 bits (126), Expect = 4e-07
Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 12/66 (18%)
Query: 188 SCNKCATSFKDN-----DTK------HHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVC 236
SC KC F N DTK HHCR CG+ C CSSK P G+ VRVC
Sbjct: 286 SCQKCEQPFFWNIKQMWDTKTLGLRQHHCRKCGQAVCGKCSSKRSSYPVMGF-EFQVRVC 344
Query: 237 DNCYEA 242
D+CY++
Sbjct: 345 DSCYDS 350
Score = 50.4 bits (119), Expect = 2e-06
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 11/61 (18%)
Query: 306 CHNCRKEF-----------SIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFN 354
C C + F ++ L +HHCR CGQ C +CS R + P G++ VRVC +
Sbjct: 287 CQKCEQPFFWNIKQMWDTKTLGLRQHHCRKCGQAVCGKCSSKRSSYPVMGFEFQVRVCDS 346
Query: 355 C 355
C
Sbjct: 347 C 347
>gi|47717112 zinc finger, FYVE domain containing 9 isoform 1 [Homo
sapiens]
Length = 1366
Score = 52.8 bits (125), Expect = 5e-07
Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 174 QIAPAYWRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPV 233
++AP W P+SQ +C KC F +HHCRACG+ FC SC S + A
Sbjct: 691 EVAPV-WVPDSQAPNCMKCEARFTFTKRRHHCRACGKVFCASCCSLKCKLLYMDRKEA-- 747
Query: 234 RVCDNCYEA-RNVQLAVTEAQVDDEGGTLIARKVGEAVQNTLGAVVTA 280
RVC C+ NV + +V G L +V +A + T+ +A
Sbjct: 748 RVCVICHSVLMNVAQPREQRRVWFADGILPNGEVADAAKLTMNGTSSA 795
Score = 48.9 bits (115), Expect = 7e-06
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 297 WVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFCDEC 333
WVPD + +C C F+ +HHCRACG+ FC C
Sbjct: 696 WVPDSQAPNCMKCEARFTFTKRRHHCRACGKVFCASC 732
>gi|16418439 WD repeat and FYVE domain containing 2 [Homo sapiens]
Length = 400
Score = 52.8 bits (125), Expect = 5e-07
Identities = 53/176 (30%), Positives = 75/176 (42%), Gaps = 36/176 (20%)
Query: 94 IECPNCGVVYRSRQYWFGNQ----DPVDTVVRT----EIVHVWP-----GTDGFLKDNNN 140
+E NC +V R + G DPV V+ + V +W GT L+ +N+
Sbjct: 184 LEQENCTLVTTFRGHTGGVTALCWDPVQRVLFSGSSDHSVIMWDIGGRKGTAIELQGHND 243
Query: 141 AAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTD---QIAPAYWRPNSQILSCNKCATSFK 197
Q L ++ + +S G + W D Q P + +S C KC F
Sbjct: 244 RVQAL----SYAQHTRQLISCGGDGGIVVWNMDVERQETPEWLDSDS----CQKCDQPFF 295
Query: 198 DN-----DTK------HHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCYEA 242
N D+K HHCR CG+ C CSSK +P G+ VRVCD+C+EA
Sbjct: 296 WNFKQMWDSKKIGLRQHHCRKCGKAVCGKCSSKRSSIPLMGF-EFEVRVCDSCHEA 350
Score = 50.8 bits (120), Expect = 2e-06
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 315 IKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNK 357
I L +HHCR CG+ C +CS R ++P G++ VRVC +C++
Sbjct: 307 IGLRQHHCRKCGKAVCGKCSSKRSSIPLMGFEFEVRVCDSCHE 349
>gi|47717106 zinc finger, FYVE domain containing 9 isoform 3 [Homo
sapiens]
Length = 1425
Score = 52.0 bits (123), Expect = 8e-07
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 174 QIAPAYWRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSS 218
++AP W P+SQ +C KC F +HHCRACG+ FC SC S
Sbjct: 691 EVAPV-WVPDSQAPNCMKCEARFTFTKRRHHCRACGKVFCASCCS 734
Score = 48.9 bits (115), Expect = 7e-06
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 297 WVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFCDEC 333
WVPD + +C C F+ +HHCRACG+ FC C
Sbjct: 696 WVPDSQAPNCMKCEARFTFTKRRHHCRACGKVFCASC 732
>gi|6552337 zinc finger, FYVE domain containing 9 isoform 2 [Homo
sapiens]
Length = 762
Score = 52.0 bits (123), Expect = 8e-07
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 174 QIAPAYWRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSS 218
++AP W P+SQ +C KC F +HHCRACG+ FC SC S
Sbjct: 691 EVAPV-WVPDSQAPNCMKCEARFTFTKRRHHCRACGKVFCASCCS 734
Score = 48.9 bits (115), Expect = 7e-06
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 297 WVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFCDEC 333
WVPD + +C C F+ +HHCRACG+ FC C
Sbjct: 696 WVPDSQAPNCMKCEARFTFTKRRHHCRACGKVFCASC 732
>gi|194018497 FYVE, RhoGEF and PH domain containing 5 [Homo sapiens]
Length = 1462
Score = 52.0 bits (123), Expect = 8e-07
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 8/138 (5%)
Query: 220 TRPVPERGWGPAPVRVCDNCYEARNVQLAVTEAQVDDEGGTLIARKVGEAVQ-NTLGAVV 278
+RPV E+ + ++C + L+ + DE ++R + E + L A
Sbjct: 1165 SRPVMEKVPYALKIETSESC-----LMLSASSCAERDEWYGCLSRALPEDYKAQALAAFH 1219
Query: 279 TAIDIPLGL-VKDAARPAYWVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDR 337
+++I L V RP VP ++ C NC +FS+ L +HHC ACG+ C CS ++
Sbjct: 1220 HSVEIRERLGVSLGERPPTLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNK 1279
Query: 338 RAVPSRGWDHPVRVCFNC 355
+ D +VC C
Sbjct: 1280 YPLKYLK-DRMAKVCDGC 1296
Score = 42.7 bits (99), Expect = 5e-04
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 182 PNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCY 240
P + ++ C C F +HHC ACG+ C +CS P+ + +VCD C+
Sbjct: 1241 PVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPL--KYLKDRMAKVCDGCF 1297
>gi|153791377 apoptosis-inducing protein D [Homo sapiens]
Length = 279
Score = 51.2 bits (121), Expect = 1e-06
Identities = 31/88 (35%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 172 TDQIAPAYWRPNSQILSCNKCA-TSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGP 230
T+ AP W P+ C +C T F +HHCR CG C CS + +P P
Sbjct: 143 TEHAAP--WIPDKATDICMRCTQTRFSALTRRHHCRKCGFVVCAECSRQRFLLPR--LSP 198
Query: 231 APVRVCDNCYEARNVQLAVTEAQVDDEG 258
PVRVC CY Q EA+ G
Sbjct: 199 KPVRVCSLCYRELAAQQRQEEAEEQGAG 226
Score = 50.1 bits (118), Expect = 3e-06
Identities = 27/65 (41%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 295 AYWVPDHEILHCHNCRK-EFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCF 353
A W+PD C C + FS +HHCR CG C ECS R +P R PVRVC
Sbjct: 147 APWIPDKATDICMRCTQTRFSALTRRHHCRKCGFVVCAECSRQRFLLP-RLSPKPVRVCS 205
Query: 354 NCNKK 358
C ++
Sbjct: 206 LCYRE 210
>gi|157738667 FYVE and coiled-coil domain containing 1 [Homo sapiens]
Length = 1478
Score = 50.8 bits (120), Expect = 2e-06
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 297 WVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCN 356
W+ D E HC +C++EFS + +HHCR CG+ FC C ++ V S+ R C C
Sbjct: 1170 WLGDTEANHCLDCKREFSWMVRRHHCRICGRIFCYYCCNN--YVLSKHGGKKERCCRACF 1227
Query: 357 KK 358
+K
Sbjct: 1228 QK 1229
Score = 33.5 bits (75), Expect = 0.30
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 180 WRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSC 216
W +++ C C F +HHCR CG FC C
Sbjct: 1170 WLGDTEANHCLDCKREFSWMVRRHHCRICGRIFCYYC 1206
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,813,719
Number of Sequences: 37866
Number of extensions: 735218
Number of successful extensions: 3407
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 3101
Number of HSP's gapped (non-prelim): 341
length of query: 362
length of database: 18,247,518
effective HSP length: 104
effective length of query: 258
effective length of database: 14,309,454
effective search space: 3691839132
effective search space used: 3691839132
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.