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Search of human proteins with 30474871
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30474871 serine palmitoyltransferase subunit 1 isoform b
[Homo sapiens]
(143 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30474871 serine palmitoyltransferase subunit 1 isoform b [Hom... 295 1e-80
gi|5454084 serine palmitoyltransferase subunit 1 isoform a [Homo... 293 3e-80
gi|40316939 5-aminolevulinate synthase 1 [Homo sapiens] 34 0.036
gi|4502025 5-aminolevulinate synthase 1 [Homo sapiens] 34 0.036
gi|7657118 glycine C-acetyltransferase precursor [Homo sapiens] 34 0.036
gi|71725360 zinc finger protein 609 [Homo sapiens] 33 0.062
gi|4758668 serine palmitoyltransferase, long chain base subunit ... 32 0.24
gi|4507689 transient receptor potential cation channel, subfamil... 32 0.24
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 31 0.40
gi|83977444 5-aminolevulinate synthase 2 isoform c precursor [Ho... 30 0.69
gi|83977440 5-aminolevulinate synthase 2 isoform b precursor [Ho... 30 0.69
gi|83977442 5-aminolevulinate synthase 2 isoform a precursor [Ho... 30 0.69
gi|134288865 solute carrier family 4, sodium bicarbonate cotrans... 29 1.5
gi|50593010 bisphosphoglycerate mutase 2 [Homo sapiens] 28 2.0
gi|37574618 hemogen [Homo sapiens] 28 2.0
gi|37574622 hemogen [Homo sapiens] 28 2.0
gi|4507447 transcription factor AP-4 (activating enhancer bindin... 27 4.4
gi|119220554 serine palmitoyltransferase, long chain base subuni... 27 4.4
gi|133778961 testis expressed 15 [Homo sapiens] 27 4.4
gi|8923720 zinc finger, C4H2 domain containing [Homo sapiens] 27 4.4
gi|223671856 coiled-coil domain containing 85C [Homo sapiens] 27 5.8
gi|119433677 chloride channel 1, skeletal muscle [Homo sapiens] 27 5.8
gi|51889724 asparagine-linked glycosylation 11 [Homo sapiens] 27 5.8
gi|31563386 sulfotransferase family, cytosolic, 2B, member 1 iso... 27 5.8
gi|31563388 sulfotransferase family, cytosolic, 2B, member 1 iso... 27 5.8
gi|31377667 peroxisomal LON protease-like [Homo sapiens] 27 5.8
gi|194394141 nucleolar preribosomal-associated protein 1 [Homo s... 27 5.8
gi|51972226 hypothetical protein LOC402573 [Homo sapiens] 27 5.8
gi|222144283 hypothetical protein LOC65998 [Homo sapiens] 27 7.6
gi|21735415 centromere protein B [Homo sapiens] 27 7.6
>gi|30474871 serine palmitoyltransferase subunit 1 isoform b [Homo
sapiens]
Length = 143
Score = 295 bits (754), Expect = 1e-80
Identities = 143/143 (100%), Positives = 143/143 (100%)
Query: 1 MATATEQWVLVEMVQALYEAPAYHLILEGILILWIIRLLFSKTYKLQERSDLTVKEKEEL 60
MATATEQWVLVEMVQALYEAPAYHLILEGILILWIIRLLFSKTYKLQERSDLTVKEKEEL
Sbjct: 1 MATATEQWVLVEMVQALYEAPAYHLILEGILILWIIRLLFSKTYKLQERSDLTVKEKEEL 60
Query: 61 IEEWQPEPLVPPVPKDHPALNYNIVSGPPSHKTVVNGKECINFASFNFLGLLDNPRVKAA 120
IEEWQPEPLVPPVPKDHPALNYNIVSGPPSHKTVVNGKECINFASFNFLGLLDNPRVKAA
Sbjct: 61 IEEWQPEPLVPPVPKDHPALNYNIVSGPPSHKTVVNGKECINFASFNFLGLLDNPRVKAA 120
Query: 121 ALASLKKYGVGTCGPRGFYGTFE 143
ALASLKKYGVGTCGPRGFYGTFE
Sbjct: 121 ALASLKKYGVGTCGPRGFYGTFE 143
>gi|5454084 serine palmitoyltransferase subunit 1 isoform a [Homo
sapiens]
Length = 473
Score = 293 bits (751), Expect = 3e-80
Identities = 142/143 (99%), Positives = 143/143 (100%)
Query: 1 MATATEQWVLVEMVQALYEAPAYHLILEGILILWIIRLLFSKTYKLQERSDLTVKEKEEL 60
MATATEQWVLVEMVQALYEAPAYHLILEGILILWIIRLLFSKTYKLQERSDLTVKEKEEL
Sbjct: 1 MATATEQWVLVEMVQALYEAPAYHLILEGILILWIIRLLFSKTYKLQERSDLTVKEKEEL 60
Query: 61 IEEWQPEPLVPPVPKDHPALNYNIVSGPPSHKTVVNGKECINFASFNFLGLLDNPRVKAA 120
IEEWQPEPLVPPVPKDHPALNYNIVSGPPSHKTVVNGKECINFASFNFLGLLDNPRVKAA
Sbjct: 61 IEEWQPEPLVPPVPKDHPALNYNIVSGPPSHKTVVNGKECINFASFNFLGLLDNPRVKAA 120
Query: 121 ALASLKKYGVGTCGPRGFYGTFE 143
ALASLKKYGVGTCGPRGFYGTF+
Sbjct: 121 ALASLKKYGVGTCGPRGFYGTFD 143
>gi|40316939 5-aminolevulinate synthase 1 [Homo sapiens]
Length = 640
Score = 34.3 bits (77), Expect = 0.036
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 93 TVVNGKECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGT 141
+++ K+ + S ++LG+ +PRV A + +LK++G G G R GT
Sbjct: 238 SLITKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGT 286
>gi|4502025 5-aminolevulinate synthase 1 [Homo sapiens]
Length = 640
Score = 34.3 bits (77), Expect = 0.036
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 93 TVVNGKECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGT 141
+++ K+ + S ++LG+ +PRV A + +LK++G G G R GT
Sbjct: 238 SLITKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGT 286
>gi|7657118 glycine C-acetyltransferase precursor [Homo sapiens]
Length = 419
Score = 34.3 bits (77), Expect = 0.036
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 101 INFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGT 141
+NF + N+LGL +P V A L +L+++G G R GT
Sbjct: 68 LNFCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGT 108
>gi|71725360 zinc finger protein 609 [Homo sapiens]
Length = 1411
Score = 33.5 bits (75), Expect = 0.062
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 46 LQERSDLTVKEKEELI-EEWQPEPLVPPVPKDHPALNYNIVSGPPSHK 92
+ +++++ +KE+E + EEW+ +P +PP P+L + SGP K
Sbjct: 1021 VDKKAEMGLKEREAALKEEWKQKPSIPPTLTKAPSLTDLVKSGPGKAK 1068
>gi|4758668 serine palmitoyltransferase, long chain base subunit 2
[Homo sapiens]
Length = 562
Score = 31.6 bits (70), Expect = 0.24
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 98 KECINFASFNFLGLLDNP-RVKAAALASLKKYGVGTCGPRGFYGTFE 143
K IN S+N+LG N + AA L++YG G C R G +
Sbjct: 168 KGVINMGSYNYLGFARNTGSCQEAAAKVLEEYGAGVCSTRQEIGNLD 214
>gi|4507689 transient receptor potential cation channel, subfamily M,
member 2 [Homo sapiens]
Length = 1503
Score = 31.6 bits (70), Expect = 0.24
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 24 HLILEGILILWIIRLLFSKTYK-LQERSDLTVK-EKEELIEEWQPEPLVPP 72
+L+ IL+L ++ +F+ T++ +QE +D K ++ +LIEE+ P PP
Sbjct: 1032 YLLFTNILLLNLLIAMFNYTFQQVQEHTDQIWKFQRHDLIEEYHGRPAAPP 1082
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 30.8 bits (68), Expect = 0.40
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 55 KEKEELIEEWQPEPLVPPVPKDHPALNYNIVSGP 88
+EKEE E QPEP+ P P+ P L S P
Sbjct: 459 EEKEEKESEPQPEPVAQPQPQSQPQLQLQSQSQP 492
>gi|83977444 5-aminolevulinate synthase 2 isoform c precursor [Homo
sapiens]
Length = 574
Score = 30.0 bits (66), Expect = 0.69
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 95 VNGKECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGT 141
V K+ + S ++LG+ +P+V A +L+++G G G R GT
Sbjct: 173 VASKDVSVWCSNDYLGMSRHPQVLQATQETLQRHGAGAGGTRNISGT 219
>gi|83977440 5-aminolevulinate synthase 2 isoform b precursor [Homo
sapiens]
Length = 550
Score = 30.0 bits (66), Expect = 0.69
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 95 VNGKECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGT 141
V K+ + S ++LG+ +P+V A +L+++G G G R GT
Sbjct: 149 VASKDVSVWCSNDYLGMSRHPQVLQATQETLQRHGAGAGGTRNISGT 195
>gi|83977442 5-aminolevulinate synthase 2 isoform a precursor [Homo
sapiens]
Length = 587
Score = 30.0 bits (66), Expect = 0.69
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 95 VNGKECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGT 141
V K+ + S ++LG+ +P+V A +L+++G G G R GT
Sbjct: 186 VASKDVSVWCSNDYLGMSRHPQVLQATQETLQRHGAGAGGTRNISGT 232
>gi|134288865 solute carrier family 4, sodium bicarbonate
cotransporter, member 7 [Homo sapiens]
Length = 1214
Score = 28.9 bits (63), Expect = 1.5
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 19 EAPAYHLILEGILILWIIRLLFSKTYKLQERSDLTVKEKEELIE-------EWQPEPLVP 71
+AP YH I I L + YK ++R+DL E L + EW P +
Sbjct: 477 KAPQYHEIGRSIATLMTDEIFHDVAYKAKDRNDLLSGIDEFLDQVTVLPPGEWDPSIRIE 536
Query: 72 PVPKDHPA 79
P PK P+
Sbjct: 537 P-PKSVPS 543
>gi|50593010 bisphosphoglycerate mutase 2 [Homo sapiens]
Length = 253
Score = 28.5 bits (62), Expect = 2.0
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 26 ILEGILILWIIRLLFSKTYKLQER----------SDLTVKEKEELIEEWQPEPLVPPVPK 75
IL+G +W L +T++L ER ++ K EE ++ W+ +PP P
Sbjct: 70 ILDGTDQMW---LPVVRTWRLNERHYGGLTGLNKAETAAKHGEEQVKIWRRSFDIPPPPM 126
Query: 76 DHPALNYNIVS 86
D YN +S
Sbjct: 127 DEKHPYYNSIS 137
>gi|37574618 hemogen [Homo sapiens]
Length = 484
Score = 28.5 bits (62), Expect = 2.0
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
Query: 39 LFSKTYKLQERSDLTVKEKEELIEEWQPEPLVPPVPKDHPALNYNIVSGPPSHKTV 94
LF K ++ E DL+ K +E E P H N IV PSHKT+
Sbjct: 297 LFPKIQEIAEPKDLSTKTHQESAE---------PKYLPHKTCNEIIVPKAPSHKTI 343
>gi|37574622 hemogen [Homo sapiens]
Length = 484
Score = 28.5 bits (62), Expect = 2.0
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
Query: 39 LFSKTYKLQERSDLTVKEKEELIEEWQPEPLVPPVPKDHPALNYNIVSGPPSHKTV 94
LF K ++ E DL+ K +E E P H N IV PSHKT+
Sbjct: 297 LFPKIQEIAEPKDLSTKTHQESAE---------PKYLPHKTCNEIIVPKAPSHKTI 343
>gi|4507447 transcription factor AP-4 (activating enhancer binding
protein 4) [Homo sapiens]
Length = 338
Score = 27.3 bits (59), Expect = 4.4
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 36 IRLLFSKTYKLQERSDLTVKEKEELIEEWQP---EPLVPPVPKDHPALNYNIVSGPPSH 91
++++ + Q++ + + +E+L E Q + L PP P HP + PPSH
Sbjct: 188 LKVIAQQVQLQQQQEQVRLLHQEKLEREQQQLRTQLLPPPAPTHHPTVIVPAPPPPPSH 246
>gi|119220554 serine palmitoyltransferase, long chain base subunit 3
[Homo sapiens]
Length = 552
Score = 27.3 bits (59), Expect = 4.4
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 98 KECINFASFNFLGLLDNPRVKAAALAS-LKKYGVGTCGPRGFYGTFE 143
K+ IN S+NFLGL + L+ YG G R GT +
Sbjct: 160 KDVINMGSYNFLGLAAKYDESMRTIKDVLEVYGTGVASTRHEMGTLD 206
>gi|133778961 testis expressed 15 [Homo sapiens]
Length = 2789
Score = 27.3 bits (59), Expect = 4.4
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 37 RLLFSKTYKLQERSDLTVKEKEELIE---EWQPEPLVPPVPKDHP 78
++L ++ ++ + S T+K+K+EL EWQ P + + HP
Sbjct: 298 KILITQELEITKSSTSTIKDKDELDHLALEWQITPSFESLSQKHP 342
>gi|8923720 zinc finger, C4H2 domain containing [Homo sapiens]
Length = 224
Score = 27.3 bits (59), Expect = 4.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 47 QERSDLTVKEKEELIEEWQPEPLVPPVPK 75
+E L++ E+ EWQ EP PP+P+
Sbjct: 125 EEEEKLSLDYFEKQKAEWQTEPQEPPIPE 153
>gi|223671856 coiled-coil domain containing 85C [Homo sapiens]
Length = 419
Score = 26.9 bits (58), Expect = 5.8
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 66 PEPLVPPVPKDHP-------ALNYNIVSGPPSHKTVVNG 97
P PL+PP P P + + +S PP H+++ NG
Sbjct: 224 PPPLLPPGPHKAPDGKAGATRRSLDDLSAPPHHRSIPNG 262
>gi|119433677 chloride channel 1, skeletal muscle [Homo sapiens]
Length = 988
Score = 26.9 bits (58), Expect = 5.8
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 26 ILEGILILWIIRLLFSKTYKLQERSDLTVKEKEELIEEWQPEPLVPPVPKDHPALN---Y 82
I + +L + R +K Q+ +DL E IE W+ E L PV D ++ +
Sbjct: 767 IFQSLLHCLLGRARPTKKKTTQDSTDLVDNMSPEEIEAWEQEQLSQPVCFDSCCIDQSPF 826
Query: 83 NIVSGPPSHKT 93
+V HKT
Sbjct: 827 QLVEQTTLHKT 837
>gi|51889724 asparagine-linked glycosylation 11 [Homo sapiens]
Length = 492
Score = 26.9 bits (58), Expect = 5.8
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 1 MATATEQWVLVEMVQALYEAPAYHLILEG------ILILWIIRLLFSKTYKLQERS 50
MA W L ++++ Y LI+ G +++LW IRLL + KL S
Sbjct: 1 MAAGERSWCLCKLLRFFYSLFFPGLIVCGTLCVCLVIVLWGIRLLLQRKKKLVSTS 56
>gi|31563386 sulfotransferase family, cytosolic, 2B, member 1
isoform b [Homo sapiens]
Length = 365
Score = 26.9 bits (58), Expect = 5.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 40 FSKTYKLQERSDLTVKEKEELIEEWQPEPLVPPVPKDHPALNYN 83
F + Y+ Q R T E+ E+ P+P P P+ P+L N
Sbjct: 293 FDRAYRKQMRGMPTFPWDEDPEEDGSPDPEPSPEPEPKPSLEPN 336
>gi|31563388 sulfotransferase family, cytosolic, 2B, member 1
isoform a [Homo sapiens]
Length = 350
Score = 26.9 bits (58), Expect = 5.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 40 FSKTYKLQERSDLTVKEKEELIEEWQPEPLVPPVPKDHPALNYN 83
F + Y+ Q R T E+ E+ P+P P P+ P+L N
Sbjct: 278 FDRAYRKQMRGMPTFPWDEDPEEDGSPDPEPSPEPEPKPSLEPN 321
>gi|31377667 peroxisomal LON protease-like [Homo sapiens]
Length = 852
Score = 26.9 bits (58), Expect = 5.8
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 11 VEMVQALYEAPAYHLILEGILILWIIRLLFSKTYKLQERSDL--------TVKEKEELIE 62
V++V + + P Y L++ G+ I+++L K Y + E L T K +EEL E
Sbjct: 86 VQVVGSNWPKPHYTLLITGLCRFQIVQVLKEKPYPIAEVEQLDRLEEFPNTCKMREELGE 145
>gi|194394141 nucleolar preribosomal-associated protein 1 [Homo
sapiens]
Length = 2271
Score = 26.9 bits (58), Expect = 5.8
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Query: 4 ATEQWVLVEMVQALYEA-PAYHLILEGILILWIIRLLFSKTYKLQERSD-------LTVK 55
A + W+L + A A AY +I + L+ WI+ +L SK + S+ L V
Sbjct: 1826 AAQNWILEILQNAAQVARSAYEIIRDYSLLTWILHILESKFLETPLLSNVISLLHTLWVT 1885
Query: 56 EKEELIEEWQPEPLVPP 72
+ EW+ + L P
Sbjct: 1886 NLGDKAVEWESQRLCQP 1902
>gi|51972226 hypothetical protein LOC402573 [Homo sapiens]
Length = 206
Score = 26.9 bits (58), Expect = 5.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 15 QALYEAPAYHLILEGILILWIIRLLFSKTYKLQER 49
Q+ + P L+ E L+LW +R + Y+ QER
Sbjct: 144 QSPLKTPEAELLWEVYLVLWAVRKHLRRLYRRQER 178
>gi|222144283 hypothetical protein LOC65998 [Homo sapiens]
Length = 678
Score = 26.6 bits (57), Expect = 7.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 55 KEKEELIEEWQPEPLVPPVPKDHPA 79
+E EE EEW PL P P + PA
Sbjct: 519 EEPEEEEEEWGDVPLSPGAPLERPA 543
>gi|21735415 centromere protein B [Homo sapiens]
Length = 599
Score = 26.6 bits (57), Expect = 7.6
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 26/87 (29%)
Query: 48 ERSDLTVKEKEELIEEWQPEPLVPPVPKDHPALNYNIVSGPPSHKTVVNGKECINFASFN 107
+R LT +EK +I+E + P + K A +NI PPS + +
Sbjct: 4 KRRQLTFREKSRIIQEVEEN---PDLRKGEIARRFNI---PPSTLSTI------------ 45
Query: 108 FLGLLDNPRVKAAALASLKKYGV-GTC 133
L N K A LAS +KYGV TC
Sbjct: 46 ----LKN---KRAILASERKYGVASTC 65
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.138 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,252,147
Number of Sequences: 37866
Number of extensions: 289080
Number of successful extensions: 1120
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1098
Number of HSP's gapped (non-prelim): 50
length of query: 143
length of database: 18,247,518
effective HSP length: 92
effective length of query: 51
effective length of database: 14,763,846
effective search space: 752956146
effective search space used: 752956146
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Table of Contents |
Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.