Guide to the Human Genome
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Name: SPTLC3 Sequence: fasta or formatted (552aa) NCBI GI: 119220554
Description:

serine palmitoyltransferase, long chain base subunit 3

Referenced in:

Sphingomyelin, Ceramides, and Glycolipids

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         41           2
 C cysteine            1.1          6           1
 D aspartate           4.7         26           2
 E glutamate           6.2         34           2
 F phenylalanine       4.7         26           2
 G glycine             8.5         47           3
 H histidine           2.9         16           1
 I isoleucine          5.3         29           2
 K lysine              6.3         35           3
 L leucine            10.0         55           3
 M methionine          3.6         20           1
 N asparagine          4.5         25           2
 P proline             3.4         19           2
 Q glutamine           3.1         17           2
 R arginine            6.0         33           2
 S serine              5.4         30           2
 T threonine           4.7         26           2
 V valine              7.1         39           4
 W tryptophan          0.7          4           1
 Y tyrosine            4.3         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   serine palmitoyltransferase, long chain base subuni... 
SPTLC2                0.693   serine palmitoyltransferase, long chain base subunit ...
GCAT                  0.141   glycine C-acetyltransferase precursor 
ALAS2                 0.135   5-aminolevulinate synthase 2 isoform c precursor [Ho...
ALAS2                 0.135   5-aminolevulinate synthase 2 isoform b precursor [Ho...
ALAS2                 0.135   5-aminolevulinate synthase 2 isoform a precursor [Ho...
SPTLC1                0.128   serine palmitoyltransferase subunit 1 isoform a [Homo...
ALAS1                 0.110   5-aminolevulinate synthase 1 
ALAS1                 0.110   5-aminolevulinate synthase 1 
DPP7                  0.005   dipeptidyl peptidase 7 preproprotein 
NT5DC3                0.005   5'-nucleotidase domain containing 3 
GTF2H4                0.004   general transcription factor IIH, polypeptide 4, 52kD...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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