Guide to the Human Genome
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Name: TXNDC6 Sequence: fasta or formatted (263aa) NCBI GI: 30023828
Description:

thioredoxin domain containing 6

Referenced in:

Glutathione Pathways
Nucleotide Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         18           1
 C cysteine            2.3          6           1
 D aspartate           7.6         20           1
 E glutamate          11.0         29           2
 F phenylalanine       4.2         11           1
 G glycine             6.1         16           1
 H histidine           3.0          8           2
 I isoleucine          3.8         10           2
 K lysine              5.7         15           1
 L leucine             9.5         25           2
 M methionine          3.0          8           1
 N asparagine          1.9          5           2
 P proline             4.6         12           1
 Q glutamine           3.0          8           1
 R arginine            6.1         16           2
 S serine              5.7         15           2
 T threonine           6.5         17           2
 V valine              6.5         17           2
 W tryptophan          0.8          2           1
 Y tyrosine            1.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   thioredoxin domain containing 6 
TXNDC3                0.189   thioredoxin domain containing 3 
NME5                  0.124   non-metastatic cells 5, protein expressed in (nucleos...
NME6                  0.112   nucleoside diphosphate kinase type 6 
NME7                  0.110   nucleoside diphosphate kinase 7 isoform b 
NME7                  0.110   nucleoside diphosphate kinase 7 isoform a 
NME1-NME2             0.069   NME1-NME2 protein 
NME2                  0.067   nucleoside diphosphate kinase B 
NME2                  0.067   nucleoside diphosphate kinase B 
NME2                  0.067   nucleoside diphosphate kinase B 
NME2                  0.067   nucleoside diphosphate kinase B 
NME3                  0.067   nucleoside diphosphate kinase 3 
NME1                  0.065   non-metastatic cells 1, protein (NM23A) expressed in...
NME1                  0.065   non-metastatic cells 1, protein (NM23A) expressed in ...
NME4                  0.057   nucleoside diphosphate kinase 4 
TXN                   0.028   thioredoxin 
TXNDC2                0.020   thioredoxin domain-containing 2 isoform 1 
TXNDC2                0.020   thioredoxin domain-containing 2 isoform 2 
TXNDC2                0.020   thioredoxin domain-containing 2 isoform 1 
TXNDC5                0.018   thioredoxin domain containing 5 isoform 1 precursor ...
TXNDC5                0.018   thioredoxin domain containing 5 isoform 3 
TXN2                  0.016   thioredoxin 2 precursor 
P4HB                  0.016   prolyl 4-hydroxylase, beta subunit precursor 
GLRX3                 0.012   glutaredoxin 3 
C1orf125              0.012   hypothetical protein LOC126859 isoform 1 
DNAJC10               0.010   DnaJ (Hsp40) homolog, subfamily C, member 10 
PI4KA                 0.008   phosphatidylinositol 4-kinase type 3 alpha isoform ...
SSX2IP                0.008   synovial sarcoma, X breakpoint 2 interacting protein...
WHAMM                 0.008   WAS protein homolog associated with actin, golgi me...
IQGAP1                0.006   IQ motif containing GTPase activating protein 1 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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