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Search of human proteins with 29789403
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|29789403 PDZ domain containing 8 [Homo sapiens]
(1154 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|29789403 PDZ domain containing 8 [Homo sapiens] 2300 0.0
gi|156119615 myosin IXA [Homo sapiens] 59 2e-08
gi|26051258 RAS guanyl releasing protein 4 isoform a [Homo sapiens] 46 2e-04
gi|226246586 RAS guanyl releasing protein 4 isoform g [Homo sapi... 46 2e-04
gi|226246584 RAS guanyl releasing protein 4 isoform f [Homo sapi... 46 2e-04
gi|226246581 RAS guanyl releasing protein 4 isoform e [Homo sapi... 46 2e-04
gi|226246579 RAS guanyl releasing protein 4 isoform d [Homo sapi... 46 2e-04
gi|226246577 RAS guanyl releasing protein 4 isoform c [Homo sapi... 46 2e-04
gi|226246575 RAS guanyl releasing protein 4 isoform b [Homo sapi... 46 2e-04
gi|190684646 RAS guanyl releasing protein 1 isoform b [Homo sapi... 46 2e-04
gi|190684644 RAS guanyl releasing protein 1 isoform a [Homo sapi... 46 2e-04
gi|4885563 protein kinase C, epsilon [Homo sapiens] 45 4e-04
gi|209977046 fibrous sheath CABYR binding protein [Homo sapiens] 45 4e-04
gi|28557781 protein kinase C, eta [Homo sapiens] 45 5e-04
gi|115529463 protein kinase D1 [Homo sapiens] 44 9e-04
gi|21361142 PDZ domain containing 1 [Homo sapiens] 44 0.001
gi|47157322 protein kinase C, beta isoform 1 [Homo sapiens] 43 0.002
gi|20127450 protein kinase C, beta isoform 2 [Homo sapiens] 43 0.002
gi|5453976 protein kinase C, theta [Homo sapiens] 43 0.002
gi|4506067 protein kinase C, alpha [Homo sapiens] 42 0.003
gi|5031689 protein kinase D3 [Homo sapiens] 42 0.003
gi|7657218 bromodomain-containing protein 4 isoform short [Homo ... 42 0.003
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ... 42 0.003
gi|13384594 protein kinase C, gamma [Homo sapiens] 42 0.003
gi|47157325 protein kinase C, delta [Homo sapiens] 42 0.003
gi|31377782 protein kinase C, delta [Homo sapiens] 42 0.003
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 42 0.003
gi|20149588 Ras association domain family 1 isoform A [Homo sapi... 42 0.004
gi|11386183 WAS protein family, member 2 [Homo sapiens] 42 0.004
gi|4502813 chimerin (chimaerin) 1 isoform a [Homo sapiens] 42 0.004
>gi|29789403 PDZ domain containing 8 [Homo sapiens]
Length = 1154
Score = 2300 bits (5959), Expect = 0.0
Identities = 1154/1154 (100%), Positives = 1154/1154 (100%)
Query: 1 MGLLLMILASAVLGSFLTLLAQFFLLYRRQPEPPADEAARAGEGFRYIKPVPGLLLREYL 60
MGLLLMILASAVLGSFLTLLAQFFLLYRRQPEPPADEAARAGEGFRYIKPVPGLLLREYL
Sbjct: 1 MGLLLMILASAVLGSFLTLLAQFFLLYRRQPEPPADEAARAGEGFRYIKPVPGLLLREYL 60
Query: 61 YGGGRDEEPSGAAPEGGATPTAAPETPAPPTRETCYFLNATILFLFRELRDTALTRRWVT 120
YGGGRDEEPSGAAPEGGATPTAAPETPAPPTRETCYFLNATILFLFRELRDTALTRRWVT
Sbjct: 61 YGGGRDEEPSGAAPEGGATPTAAPETPAPPTRETCYFLNATILFLFRELRDTALTRRWVT 120
Query: 121 KKIKVEFEELLQTKTAGRLLEGLSLRDVFLGETVPFIKTIRLVRPVVPSATGEPDGPEGE 180
KKIKVEFEELLQTKTAGRLLEGLSLRDVFLGETVPFIKTIRLVRPVVPSATGEPDGPEGE
Sbjct: 121 KKIKVEFEELLQTKTAGRLLEGLSLRDVFLGETVPFIKTIRLVRPVVPSATGEPDGPEGE 180
Query: 181 ALPAACPEELAFEAEVEYNGGFHLAIDVDLVFGKSAYLFVKLSRVVGRLRLVFTRVPFTH 240
ALPAACPEELAFEAEVEYNGGFHLAIDVDLVFGKSAYLFVKLSRVVGRLRLVFTRVPFTH
Sbjct: 181 ALPAACPEELAFEAEVEYNGGFHLAIDVDLVFGKSAYLFVKLSRVVGRLRLVFTRVPFTH 240
Query: 241 WFFSFVEDPLIDFEVRSQFEGRPMPQLTSIIVNQLKKIIKRKHTLPNYKIRFKPFFPYQT 300
WFFSFVEDPLIDFEVRSQFEGRPMPQLTSIIVNQLKKIIKRKHTLPNYKIRFKPFFPYQT
Sbjct: 241 WFFSFVEDPLIDFEVRSQFEGRPMPQLTSIIVNQLKKIIKRKHTLPNYKIRFKPFFPYQT 300
Query: 301 LQGFEEDEEHIHIQQWALTEGRLKVTLLECSRLLIFGSYDREANVHCTLELSSSVWEEKQ 360
LQGFEEDEEHIHIQQWALTEGRLKVTLLECSRLLIFGSYDREANVHCTLELSSSVWEEKQ
Sbjct: 301 LQGFEEDEEHIHIQQWALTEGRLKVTLLECSRLLIFGSYDREANVHCTLELSSSVWEEKQ 360
Query: 361 RSSIKTVELIKGNLQSVGLTLRLVQSTDGYAGHVIIETVAPNSPAAIADLQRGDRLIAIG 420
RSSIKTVELIKGNLQSVGLTLRLVQSTDGYAGHVIIETVAPNSPAAIADLQRGDRLIAIG
Sbjct: 361 RSSIKTVELIKGNLQSVGLTLRLVQSTDGYAGHVIIETVAPNSPAAIADLQRGDRLIAIG 420
Query: 421 GVKITSTLQVLKLIKQAGDRVLVYYERPVGQSNQGAVLQDNFGQLEENFLSSSCQSGYEE 480
GVKITSTLQVLKLIKQAGDRVLVYYERPVGQSNQGAVLQDNFGQLEENFLSSSCQSGYEE
Sbjct: 421 GVKITSTLQVLKLIKQAGDRVLVYYERPVGQSNQGAVLQDNFGQLEENFLSSSCQSGYEE 480
Query: 481 EAAGLTVDTESRELDSEFEDLASDVRAQNEFKDEAQSLSHSPKRVPTTLSIKPLGAISPV 540
EAAGLTVDTESRELDSEFEDLASDVRAQNEFKDEAQSLSHSPKRVPTTLSIKPLGAISPV
Sbjct: 481 EAAGLTVDTESRELDSEFEDLASDVRAQNEFKDEAQSLSHSPKRVPTTLSIKPLGAISPV 540
Query: 541 LNRKLAVGSHPLPPKIQSKDGNKPPPLKTSEITDPAQVSKPTQGSAFKPPVPPRPQAKVP 600
LNRKLAVGSHPLPPKIQSKDGNKPPPLKTSEITDPAQVSKPTQGSAFKPPVPPRPQAKVP
Sbjct: 541 LNRKLAVGSHPLPPKIQSKDGNKPPPLKTSEITDPAQVSKPTQGSAFKPPVPPRPQAKVP 600
Query: 601 LPSADAPNQAEPDVLVEKPEKVVPPPLVDKSAEKQAKNVDAIDDAAAPKQFLAKQEVAKD 660
LPSADAPNQAEPDVLVEKPEKVVPPPLVDKSAEKQAKNVDAIDDAAAPKQFLAKQEVAKD
Sbjct: 601 LPSADAPNQAEPDVLVEKPEKVVPPPLVDKSAEKQAKNVDAIDDAAAPKQFLAKQEVAKD 660
Query: 661 VTSETSCPTKDSSDDRQTWESSEILYRNKLGKWTRTRASCLFDIEACHRYLNIALWCRDP 720
VTSETSCPTKDSSDDRQTWESSEILYRNKLGKWTRTRASCLFDIEACHRYLNIALWCRDP
Sbjct: 661 VTSETSCPTKDSSDDRQTWESSEILYRNKLGKWTRTRASCLFDIEACHRYLNIALWCRDP 720
Query: 721 FKLGGLICLGHVSLKLEDVALGCLATSNTEYLSKLRLEAPSPKAIVTRTALRNLSMQKGF 780
FKLGGLICLGHVSLKLEDVALGCLATSNTEYLSKLRLEAPSPKAIVTRTALRNLSMQKGF
Sbjct: 721 FKLGGLICLGHVSLKLEDVALGCLATSNTEYLSKLRLEAPSPKAIVTRTALRNLSMQKGF 780
Query: 781 NDKFCYGDITIHFKYLKEGESDHHVVTNVEKEKEPHLVEEVSVLPKEEQFVGQMGLTENK 840
NDKFCYGDITIHFKYLKEGESDHHVVTNVEKEKEPHLVEEVSVLPKEEQFVGQMGLTENK
Sbjct: 781 NDKFCYGDITIHFKYLKEGESDHHVVTNVEKEKEPHLVEEVSVLPKEEQFVGQMGLTENK 840
Query: 841 HSFQDTQFQNPTWCDYCKKKVWTKAASQCMFCAYVCHKKCQEKCLAETSVCGATDRRIDR 900
HSFQDTQFQNPTWCDYCKKKVWTKAASQCMFCAYVCHKKCQEKCLAETSVCGATDRRIDR
Sbjct: 841 HSFQDTQFQNPTWCDYCKKKVWTKAASQCMFCAYVCHKKCQEKCLAETSVCGATDRRIDR 900
Query: 901 TLKNLRLEGQETLLGLPPRVDAEASKSVNKTTGLTRHIINTSSRLLNLRQVSKTRLSEPG 960
TLKNLRLEGQETLLGLPPRVDAEASKSVNKTTGLTRHIINTSSRLLNLRQVSKTRLSEPG
Sbjct: 901 TLKNLRLEGQETLLGLPPRVDAEASKSVNKTTGLTRHIINTSSRLLNLRQVSKTRLSEPG 960
Query: 961 TDLVEPSPKHTPNTSDNEGSDTEVCGPNSPSKRGNSTGIKLVRKEGGLDDSVFIAVKEIG 1020
TDLVEPSPKHTPNTSDNEGSDTEVCGPNSPSKRGNSTGIKLVRKEGGLDDSVFIAVKEIG
Sbjct: 961 TDLVEPSPKHTPNTSDNEGSDTEVCGPNSPSKRGNSTGIKLVRKEGGLDDSVFIAVKEIG 1020
Query: 1021 RDLYRGLPTEERIQKLEFMLDKLQNEIDQELEHNNSLVREEKETTDTRKKSLLSAALAKS 1080
RDLYRGLPTEERIQKLEFMLDKLQNEIDQELEHNNSLVREEKETTDTRKKSLLSAALAKS
Sbjct: 1021 RDLYRGLPTEERIQKLEFMLDKLQNEIDQELEHNNSLVREEKETTDTRKKSLLSAALAKS 1080
Query: 1081 GERLQALTLLMIHYRAGIEDIETLESLSLDQHSKKISKYTDDTEEDLDNEISQLIDSQPF 1140
GERLQALTLLMIHYRAGIEDIETLESLSLDQHSKKISKYTDDTEEDLDNEISQLIDSQPF
Sbjct: 1081 GERLQALTLLMIHYRAGIEDIETLESLSLDQHSKKISKYTDDTEEDLDNEISQLIDSQPF 1140
Query: 1141 SSISDDLFGPSESV 1154
SSISDDLFGPSESV
Sbjct: 1141 SSISDDLFGPSESV 1154
>gi|156119615 myosin IXA [Homo sapiens]
Length = 2548
Score = 59.3 bits (142), Expect = 2e-08
Identities = 36/106 (33%), Positives = 47/106 (44%), Gaps = 28/106 (26%)
Query: 794 KYLKEGESDHHVVTNVEK-------EKEPHLVEEVSVLPKEEQFVGQMGLTENKHSFQDT 846
+Y+ E ++ T V K +KE LVEE N H F+ T
Sbjct: 1963 EYMNEFKTSDCTATKVPKTERKKRRKKETDLVEE-----------------HNGHIFKAT 2005
Query: 847 QFQNPTWCDYCKKKVWTK-AASQCMFCAYVCHKKCQEKCLAETSVC 891
Q+ PT+C+YC +W AS C C Y CHKKC CL T+ C
Sbjct: 2006 QYSIPTYCEYCSSLIWIMDRASVCKLCKYACHKKC---CLKTTAKC 2048
>gi|26051258 RAS guanyl releasing protein 4 isoform a [Homo sapiens]
Length = 673
Score = 46.2 bits (108), Expect = 2e-04
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 841 HSFQDTQFQNPTWCDYCKKKVW--TKAASQCMFCAYVCHKKCQEKCLAE 887
H+F + F+ PT+CD C +W TK +C C CHK C+++ E
Sbjct: 541 HTFHEVTFRKPTFCDSCSGFLWGVTKQGYRCRECGLCCHKHCRDQVKVE 589
>gi|226246586 RAS guanyl releasing protein 4 isoform g [Homo
sapiens]
Length = 576
Score = 46.2 bits (108), Expect = 2e-04
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 841 HSFQDTQFQNPTWCDYCKKKVW--TKAASQCMFCAYVCHKKCQEKCLAE 887
H+F + F+ PT+CD C +W TK +C C CHK C+++ E
Sbjct: 444 HTFHEVTFRKPTFCDSCSGFLWGVTKQGYRCRECGLCCHKHCRDQVKVE 492
>gi|226246584 RAS guanyl releasing protein 4 isoform f [Homo
sapiens]
Length = 484
Score = 46.2 bits (108), Expect = 2e-04
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 841 HSFQDTQFQNPTWCDYCKKKVW--TKAASQCMFCAYVCHKKCQEKCLAE 887
H+F + F+ PT+CD C +W TK +C C CHK C+++ E
Sbjct: 352 HTFHEVTFRKPTFCDSCSGFLWGVTKQGYRCRECGLCCHKHCRDQVKVE 400
>gi|226246581 RAS guanyl releasing protein 4 isoform e [Homo
sapiens]
Length = 639
Score = 46.2 bits (108), Expect = 2e-04
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 841 HSFQDTQFQNPTWCDYCKKKVW--TKAASQCMFCAYVCHKKCQEKCLAE 887
H+F + F+ PT+CD C +W TK +C C CHK C+++ E
Sbjct: 507 HTFHEVTFRKPTFCDSCSGFLWGVTKQGYRCRECGLCCHKHCRDQVKVE 555
>gi|226246579 RAS guanyl releasing protein 4 isoform d [Homo
sapiens]
Length = 604
Score = 46.2 bits (108), Expect = 2e-04
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 841 HSFQDTQFQNPTWCDYCKKKVW--TKAASQCMFCAYVCHKKCQEKCLAE 887
H+F + F+ PT+CD C +W TK +C C CHK C+++ E
Sbjct: 472 HTFHEVTFRKPTFCDSCSGFLWGVTKQGYRCRECGLCCHKHCRDQVKVE 520
>gi|226246577 RAS guanyl releasing protein 4 isoform c [Homo
sapiens]
Length = 581
Score = 46.2 bits (108), Expect = 2e-04
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 841 HSFQDTQFQNPTWCDYCKKKVW--TKAASQCMFCAYVCHKKCQEKCLAE 887
H+F + F+ PT+CD C +W TK +C C CHK C+++ E
Sbjct: 449 HTFHEVTFRKPTFCDSCSGFLWGVTKQGYRCRECGLCCHKHCRDQVKVE 497
>gi|226246575 RAS guanyl releasing protein 4 isoform b [Homo
sapiens]
Length = 659
Score = 46.2 bits (108), Expect = 2e-04
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 841 HSFQDTQFQNPTWCDYCKKKVW--TKAASQCMFCAYVCHKKCQEKCLAE 887
H+F + F+ PT+CD C +W TK +C C CHK C+++ E
Sbjct: 527 HTFHEVTFRKPTFCDSCSGFLWGVTKQGYRCRECGLCCHKHCRDQVKVE 575
>gi|190684646 RAS guanyl releasing protein 1 isoform b [Homo
sapiens]
Length = 762
Score = 46.2 bits (108), Expect = 2e-04
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 841 HSFQDTQFQNPTWCDYCKKKVW--TKAASQCMFCAYVCHKKCQE------KCLAETSVCG 892
H+FQ+T + PT+CD C +W K +C C CHK+C++ K A+ V
Sbjct: 507 HNFQETTYLKPTFCDNCAGFLWGVIKQGYRCKDCGMNCHKQCKDLVVFECKKRAKNPVAP 566
Query: 893 ATDRRIDRTLKNLRLEGQETLLGLPPR-----VDAEASKSVNKTTGLTRHIINTSSRLLN 947
+ + NL G + LL P + EA + ++ T ++ SS+ ++
Sbjct: 567 TENNTSVGPVSNLCSLGAKDLLHAPEEGPFTFPNGEAVEHGEESKDRTIMLMGVSSQKIS 626
Query: 948 LR 949
LR
Sbjct: 627 LR 628
>gi|190684644 RAS guanyl releasing protein 1 isoform a [Homo
sapiens]
Length = 797
Score = 46.2 bits (108), Expect = 2e-04
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 841 HSFQDTQFQNPTWCDYCKKKVW--TKAASQCMFCAYVCHKKCQE------KCLAETSVCG 892
H+FQ+T + PT+CD C +W K +C C CHK+C++ K A+ V
Sbjct: 542 HNFQETTYLKPTFCDNCAGFLWGVIKQGYRCKDCGMNCHKQCKDLVVFECKKRAKNPVAP 601
Query: 893 ATDRRIDRTLKNLRLEGQETLLGLPPR-----VDAEASKSVNKTTGLTRHIINTSSRLLN 947
+ + NL G + LL P + EA + ++ T ++ SS+ ++
Sbjct: 602 TENNTSVGPVSNLCSLGAKDLLHAPEEGPFTFPNGEAVEHGEESKDRTIMLMGVSSQKIS 661
Query: 948 LR 949
LR
Sbjct: 662 LR 663
>gi|4885563 protein kinase C, epsilon [Homo sapiens]
Length = 737
Score = 45.1 bits (105), Expect = 4e-04
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 839 NKHSFQDTQFQNPTWCDYCKKKVW---TKAASQCMFCAYVCHKKCQE 882
N H F T + PT+C +C+ +W K QC C V HK+C E
Sbjct: 168 NGHKFMATYLRQPTYCSHCRDFIWGVIGKQGYQCQVCTCVVHKRCHE 214
Score = 39.3 bits (90), Expect = 0.022
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Query: 809 VEKEKEPHLVEEVSVLPKEE--QFVGQMGLTENK-HSFQDTQFQNPTWCDYCKKKVW--T 863
V K ++ + + L K+E VG + N H F ++ PT+CD+C +W
Sbjct: 208 VHKRCHELIITKCAGLKKQETPDQVGSQRFSVNMPHKFGIHNYKVPTFCDHCGSLLWGLL 267
Query: 864 KAASQCMFCAYVCHKKCQEKCLAETSVCGATDRRIDRTLKNL 905
+ QC C H++C+ CG R I + L +L
Sbjct: 268 RQGLQCKVCKMNVHRRCETNVAPN---CGVDARGIAKVLADL 306
>gi|209977046 fibrous sheath CABYR binding protein [Homo sapiens]
Length = 825
Score = 45.1 bits (105), Expect = 4e-04
Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 15/164 (9%)
Query: 472 SSCQSGYEEEAAGLTVDTESRELDSEFEDLASDVRAQNEFKDEAQSLSHSPKRVPTTLSI 531
+S + + E + L +T + E +E + LA+ +E EAQS P T+
Sbjct: 499 TSAEEAHAEVQSPLAEETTAEEASAEIQLLAAIEAPADETPAEAQS----PLSEETSAEE 554
Query: 532 KPLGAISPVLNRKLAVGSHPLPPKIQSKDGNKPPPLKTSEITDPAQVSKPTQGSAFKPPV 591
P SP V P ++Q G + E + Q+ T+ SA + P
Sbjct: 555 APAEVQSPSAK---GVSIEEAPLELQPPSGEETT---AEEASAAIQLLAATEASAEEAPA 608
Query: 592 PPRPQAKVPLPSADAPNQAEPDVLVEKPEKVVPPPLVDKSAEKQ 635
+P P+ +AP + +P E P +V PPP + AE Q
Sbjct: 609 EVQPP-----PAEEAPAEVQPPPAEEAPAEVQPPPAEEAPAEVQ 647
Score = 35.8 bits (81), Expect = 0.24
Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 10/127 (7%)
Query: 553 PPKIQSKDGNKPPPLKTSEITDPAQVSKPTQGSA----FKPPVPPRPQAKVPLPSADAPN 608
PP ++ +PPP + + PA+V P A PP P P P+ +AP
Sbjct: 613 PPAEEAPAEVQPPPAEEA----PAEVQPPPAEEAPAEVQPPPAEEAPAEVQPPPAEEAPA 668
Query: 609 QAEPDVLVEKPEKVVPPPLVDKSAEKQAKNVDA--IDDAAAPKQFLAKQEVAKDVTSETS 666
+ +P E P +V P + E+ V + DD A + + K D+
Sbjct: 669 EVQPPPAEEAPAEVQSLPAEETPIEETLAAVHSPPADDVPAEEASVDKHSPPADLLLTEE 728
Query: 667 CPTKDSS 673
P ++S
Sbjct: 729 FPIGEAS 735
>gi|28557781 protein kinase C, eta [Homo sapiens]
Length = 683
Score = 44.7 bits (104), Expect = 5e-04
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 839 NKHSFQDTQFQNPTWCDYCKKKVW---TKAASQCMFCAYVCHKKCQEKCLAETSVCGATD 895
N H F T + PT+C +C++ +W K QC C V HK+C + C
Sbjct: 170 NGHKFMATYLRQPTYCSHCREFIWGVFGKQGYQCQVCTCVVHKRCHH-LIVTACTCQNNI 228
Query: 896 RRIDRTLKNLR 906
++D + R
Sbjct: 229 NKVDSKIAEQR 239
Score = 39.7 bits (91), Expect = 0.017
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 14/94 (14%)
Query: 841 HSFQDTQFQNPTWCDYCKKKVW--TKAASQCMFCAYVCHKKCQEKCLAETSVCGATDRRI 898
H F ++ PT+CD+C +W + QC C H +CQ CG +
Sbjct: 246 HKFSIHNYKVPTFCDHCGSLLWGIMRQGLQCKICKMNVHIRCQANVAPN---CGVNAVEL 302
Query: 899 DRTLKNLRLEGQETLLGLPPRVDAEASKSVNKTT 932
+TL +GL P + SK V+++T
Sbjct: 303 AKTLAG---------MGLQPGNISPTSKLVSRST 327
>gi|115529463 protein kinase D1 [Homo sapiens]
Length = 912
Score = 43.9 bits (102), Expect = 9e-04
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 841 HSFQDTQFQNPTWCDYCKK--KVWTKAASQCMFCAYVCHKKCQEK----CLAETSVCG 892
H+F + PT C YCKK K + QC C + CHK+C K CL E ++ G
Sbjct: 271 HTFVIHSYTRPTVCQYCKKLLKGLFRQGLQCKDCRFNCHKRCAPKVPNNCLGEVTING 328
Score = 33.1 bits (74), Expect = 1.6
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 841 HSFQDTQFQNPTWCDYCKKKVW--TKAASQCMFCAYVCHKKCQEKCLAETSVCGATDRRI 898
H+ ++ P +CD+C + +W + +C C HK+C K + C R
Sbjct: 147 HALFVHSYRAPAFCDHCGEMLWGLVRQGLKCEGCGLNYHKRCAFKI---PNNCSGVRR-- 201
Query: 899 DRTLKNLRLEGQETL 913
R L N+ L G T+
Sbjct: 202 -RRLSNVSLTGVSTI 215
>gi|21361142 PDZ domain containing 1 [Homo sapiens]
Length = 519
Score = 43.5 bits (101), Expect = 0.001
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 21/111 (18%)
Query: 368 ELIKGNLQSVGLTLRLVQSTDGYAGHVIIETVAPNSPAAIADLQRGDRLIAIGGVKITST 427
+L K Q+ G LR+ + T+G+ ++ V SPA A LQ GDR++ I GV +
Sbjct: 11 KLSKQEGQNYGFFLRIEKDTEGH----LVRVVEKCSPAEKAGLQDGDRVLRINGVFVDKE 66
Query: 428 --LQVLKLIKQAGDRVLVY------YERPV---------GQSNQGAVLQDN 461
+QV+ L++++G+ V + YE+ V GQS + L DN
Sbjct: 67 EHMQVVDLVRKSGNSVTLLVLDGDSYEKAVKTRVDLKELGQSQKEQGLSDN 117
>gi|47157322 protein kinase C, beta isoform 1 [Homo sapiens]
Length = 671
Score = 43.1 bits (100), Expect = 0.002
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 841 HSFQDTQFQNPTWCDYCKKKVWT--KAASQCMFCAYVCHKKCQE 882
H F F+ PT+C +C +W K QC C +V HK+C E
Sbjct: 37 HKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCCFVVHKRCHE 80
Score = 35.0 bits (79), Expect = 0.41
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 15/92 (16%)
Query: 839 NKHSFQDTQFQNPTWCDYCKKKVW--TKAASQCMFCAYVCHKKCQEKCLAETSVCGA--T 894
+KH F+ + +PT+CD+C ++ +C C HK+C + S+CG T
Sbjct: 100 SKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRC---VMNVPSLCGTDHT 156
Query: 895 DRR--------IDRTLKNLRLEGQETLLGLPP 918
+RR IDR + + + + L+ + P
Sbjct: 157 ERRGRIYIQAHIDRDVLIVLVRDAKNLVPMDP 188
>gi|20127450 protein kinase C, beta isoform 2 [Homo sapiens]
Length = 673
Score = 43.1 bits (100), Expect = 0.002
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 841 HSFQDTQFQNPTWCDYCKKKVWT--KAASQCMFCAYVCHKKCQE 882
H F F+ PT+C +C +W K QC C +V HK+C E
Sbjct: 37 HKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCCFVVHKRCHE 80
Score = 35.0 bits (79), Expect = 0.41
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 15/92 (16%)
Query: 839 NKHSFQDTQFQNPTWCDYCKKKVW--TKAASQCMFCAYVCHKKCQEKCLAETSVCGA--T 894
+KH F+ + +PT+CD+C ++ +C C HK+C + S+CG T
Sbjct: 100 SKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRC---VMNVPSLCGTDHT 156
Query: 895 DRR--------IDRTLKNLRLEGQETLLGLPP 918
+RR IDR + + + + L+ + P
Sbjct: 157 ERRGRIYIQAHIDRDVLIVLVRDAKNLVPMDP 188
>gi|5453976 protein kinase C, theta [Homo sapiens]
Length = 706
Score = 43.1 bits (100), Expect = 0.002
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 841 HSFQDTQFQNPTWCDYCKKKVW--TKAASQCMFCAYVCHKKCQEKCLAE 887
H F T F PT+C C + VW K QC C HKKC +K +A+
Sbjct: 160 HEFTATFFPQPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDKVIAK 208
Score = 36.6 bits (83), Expect = 0.14
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 826 KEEQFVGQMGLTENKHSFQDTQFQNPTWCDYCKKKVW--TKAASQCMFCAYVCHKKCQEK 883
+E F + + H F+ +++PT+C++C +W + +C C H +CQ K
Sbjct: 217 RETMFHKERFKIDMPHRFKVYNYKSPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTK 276
Query: 884 CLAETSVCGATDRRIDRTL 902
++CG + + L
Sbjct: 277 V---ANLCGINQKLMAEAL 292
>gi|4506067 protein kinase C, alpha [Homo sapiens]
Length = 672
Score = 42.4 bits (98), Expect = 0.003
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 841 HSFQDTQFQNPTWCDYCKKKVWT--KAASQCMFCAYVCHKKCQE 882
H F F+ PT+C +C +W K QC C +V HK+C E
Sbjct: 37 HKFIARFFKQPTFCSHCTDFIWGFGKQGFQCQVCCFVVHKRCHE 80
Score = 32.0 bits (71), Expect = 3.5
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 839 NKHSFQDTQFQNPTWCDYCKKKVW--TKAASQCMFCAYVCHKKCQEKCLAETSVCGATDR 896
+KH F+ + +PT+CD+C ++ +C C HK+C + S+CG
Sbjct: 100 SKHKFKIHTYGSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQC---VINVPSLCG---- 152
Query: 897 RIDRTLKNLRL 907
+D T K R+
Sbjct: 153 -MDHTEKRGRI 162
>gi|5031689 protein kinase D3 [Homo sapiens]
Length = 890
Score = 42.4 bits (98), Expect = 0.003
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 841 HSFQDTQFQNPTWCDYCKK--KVWTKAASQCMFCAYVCHKKCQEK----CLAETSVCG 892
H+F + PT C YCK+ K + QC C + CHK+C K CL E + G
Sbjct: 272 HTFAVHSYTRPTICQYCKRLLKGLFRQGMQCKDCKFNCHKRCASKVPRDCLGEVTFNG 329
Score = 42.0 bits (97), Expect = 0.003
Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 17/189 (8%)
Query: 788 DITIHFKYLKEGESDHHVVTNVEKEKEPHLVEEV-SVLPKEEQFVGQMGLTENKHSFQDT 846
D + F++ E+ ++T+ ++ E LVE V S L E F H+
Sbjct: 107 DKILLFRHDMNSENILQLITSADEIHEGDLVEVVLSALATVEDF------QIRPHTLYVH 160
Query: 847 QFQNPTWCDYCKKKVW--TKAASQCMFCAYVCHKKCQEKCLAETSVCGATDRRIDRTLKN 904
++ PT+CDYC + +W + +C C HK+C K + G RR L N
Sbjct: 161 SYKAPTFCDYCGEMLWGLVRQGLKCEGCGLNYHKRCAFK--IPNNCSGVRKRR----LSN 214
Query: 905 LRLEGQETLLGLP--PRVDAEASKSVNKTTGLTRHIINTSSRLLNLRQVSKTRLSEPGTD 962
+ L G + P P A S+ + ++ I + S R + + ++ R+ P T
Sbjct: 215 VSLPGPGLSVPRPLQPEYVALPSEESHVHQEPSKRIPSWSGRPIWMEKMVMCRVKVPHTF 274
Query: 963 LVEPSPKHT 971
V + T
Sbjct: 275 AVHSYTRPT 283
>gi|7657218 bromodomain-containing protein 4 isoform short [Homo
sapiens]
Length = 722
Score = 42.4 bits (98), Expect = 0.003
Identities = 35/138 (25%), Positives = 53/138 (38%), Gaps = 15/138 (10%)
Query: 553 PPKIQSKDGNKPPPLKTSE----------ITDPAQVSKPTQGSAFKPPVPPRPQAKVPLP 602
PP+ Q+ N PP T + P P Q PPVPP+PQ P
Sbjct: 205 PPQTQTPQPNPPPVQATPHPFPAVTPDLIVQTPVMTVVPPQPLQTPPPVPPQPQP--PPA 262
Query: 603 SADAPNQAEPDVLVEKPEKVVPPPLVDKSAEKQA-KNVDAIDD--AAAPKQFLAKQEVAK 659
A P Q+ P ++ P+ V V + A+ +D I + + P+ K +
Sbjct: 263 PAPQPVQSHPPIIAATPQPVKTKKGVKRKADTTTPTTIDPIHEPPSLPPEPKTTKLGQRR 322
Query: 660 DVTSETSCPTKDSSDDRQ 677
+ + P KD D +Q
Sbjct: 323 ESSRPVKPPKKDVPDSQQ 340
>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
sapiens]
Length = 1362
Score = 42.4 bits (98), Expect = 0.003
Identities = 35/138 (25%), Positives = 53/138 (38%), Gaps = 15/138 (10%)
Query: 553 PPKIQSKDGNKPPPLKTSE----------ITDPAQVSKPTQGSAFKPPVPPRPQAKVPLP 602
PP+ Q+ N PP T + P P Q PPVPP+PQ P
Sbjct: 205 PPQTQTPQPNPPPVQATPHPFPAVTPDLIVQTPVMTVVPPQPLQTPPPVPPQPQP--PPA 262
Query: 603 SADAPNQAEPDVLVEKPEKVVPPPLVDKSAEKQA-KNVDAIDD--AAAPKQFLAKQEVAK 659
A P Q+ P ++ P+ V V + A+ +D I + + P+ K +
Sbjct: 263 PAPQPVQSHPPIIAATPQPVKTKKGVKRKADTTTPTTIDPIHEPPSLPPEPKTTKLGQRR 322
Query: 660 DVTSETSCPTKDSSDDRQ 677
+ + P KD D +Q
Sbjct: 323 ESSRPVKPPKKDVPDSQQ 340
Score = 39.3 bits (90), Expect = 0.022
Identities = 28/81 (34%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 550 HPLPPKIQSKDGNKPPPLKTSEITDPAQVSKPTQGSAFKPPVPPRPQAKVP----LPSAD 605
H PP + PP L + P Q S+P+ +A PP P RP A P P
Sbjct: 845 HSTPPHLNQHAVVSPPALHNAL---PQQPSRPSNRAAALPPKPARPPAVSPALTQTPLLP 901
Query: 606 APNQAE-PDVLVEKPEKVVPP 625
P A+ P VL+E E PP
Sbjct: 902 QPPMAQPPQVLLEDEEPPAPP 922
Score = 32.0 bits (71), Expect = 3.5
Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 8/85 (9%)
Query: 551 PLPPKIQSKDGNKPPPLKTSEITDPAQVSKP-----TQGSAFKPPVPPR---PQAKVPLP 602
P PP+ Q + PPP + PA S P TQ +P +P P P
Sbjct: 767 PPPPQQQQQPPPPPPPPSMPQQAAPAMKSSPPPFIATQVPVLEPQLPGSVFDPIGHFTQP 826
Query: 603 SADAPNQAEPDVLVEKPEKVVPPPL 627
P P L + PE PP L
Sbjct: 827 ILHLPQPELPPHLPQPPEHSTPPHL 851
>gi|13384594 protein kinase C, gamma [Homo sapiens]
Length = 697
Score = 42.4 bits (98), Expect = 0.003
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 841 HSFQDTQFQNPTWCDYCKKKVWT--KAASQCMFCAYVCHKKCQE 882
H F F+ PT+C +C +W K QC C++V H++C E
Sbjct: 36 HKFTARFFKQPTFCSHCTDFIWGIGKQGLQCQVCSFVVHRRCHE 79
Score = 38.1 bits (87), Expect = 0.049
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 19/103 (18%)
Query: 839 NKHSFQDTQFQNPTWCDYCKKKVW--TKAASQCMFCAYVCHKKCQEKCLAETSVCGATDR 896
NKH F+ + +PT+CD+C ++ +C C H++C + S+CG
Sbjct: 99 NKHKFRLHSYSSPTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVR---SVPSLCG---- 151
Query: 897 RIDRTLKNLRLEGQETLLGLPPRVDAEASKSVNKTTGLTRHII 939
+D T + RL+ + + A + ++ T G R++I
Sbjct: 152 -VDHTERRGRLQLE---------IRAPTADEIHVTVGEARNLI 184
>gi|47157325 protein kinase C, delta [Homo sapiens]
Length = 676
Score = 42.0 bits (97), Expect = 0.003
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 841 HSFQDTQFQNPTWCDYCKKKVW--TKAASQCMFCAYVCHKKCQEKCLAETSVCGATDR 896
H F T F PT+C CK VW K +C C HKKC +K + + A R
Sbjct: 159 HEFIATFFGQPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDKIIGRCTGTAANSR 216
Score = 41.6 bits (96), Expect = 0.004
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 841 HSFQDTQFQNPTWCDYCKKKVW--TKAASQCMFCAYVCHKKCQEKCLAETSVCGATDRRI 898
H F+ + +PT+CD+C +W K +C C H KC+EK ++CG + +
Sbjct: 231 HRFKVHNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKV---ANLCGINQKLL 287
Query: 899 DRTLKNL 905
L +
Sbjct: 288 AEALNQV 294
>gi|31377782 protein kinase C, delta [Homo sapiens]
Length = 676
Score = 42.0 bits (97), Expect = 0.003
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 841 HSFQDTQFQNPTWCDYCKKKVW--TKAASQCMFCAYVCHKKCQEKCLAETSVCGATDR 896
H F T F PT+C CK VW K +C C HKKC +K + + A R
Sbjct: 159 HEFIATFFGQPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDKIIGRCTGTAANSR 216
Score = 41.6 bits (96), Expect = 0.004
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 841 HSFQDTQFQNPTWCDYCKKKVW--TKAASQCMFCAYVCHKKCQEKCLAETSVCGATDRRI 898
H F+ + +PT+CD+C +W K +C C H KC+EK ++CG + +
Sbjct: 231 HRFKVHNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKV---ANLCGINQKLL 287
Query: 899 DRTLKNL 905
L +
Sbjct: 288 AEALNQV 294
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 42.0 bits (97), Expect = 0.003
Identities = 45/177 (25%), Positives = 69/177 (38%), Gaps = 7/177 (3%)
Query: 497 EFEDLASDVRAQNEFKDEAQSLSHSPKRVPTTLSIKPLGAISPVLNRKLAVGSHPLPPKI 556
E E+ S +A++ K EA+S + V P A SPV + P K
Sbjct: 656 EKEEAKSPEKAKSPVKAEAKSPEKAKSPVKAEAK-SPEKAKSPVKEEAKSPEKAKSPVKE 714
Query: 557 QSKDGNKPPPLKTSEITDPAQVSKPTQGSAFKPPVPPRPQAKVPL----PSADAPNQAEP 612
++K K E P + P + A P P+ L P A P + E
Sbjct: 715 EAKSPEKAKSPVKEEAKTPEKAKSPVKEEAKSPEKAKSPEKAKTLDVKSPEAKTPAKEEA 774
Query: 613 DVLVEK-PEKVVPPPLVDKSAEKQAKNVDAIDDAAAPKQFLAKQEVAKDVTSETSCP 668
+K PEK P + + ++AK+ +DA AP++ + K+E K E P
Sbjct: 775 RSPADKFPEKAKSPVKEEVKSPEKAKS-PLKEDAKAPEKEIPKKEEVKSPVKEEEKP 830
Score = 40.4 bits (93), Expect = 0.010
Identities = 45/191 (23%), Positives = 72/191 (37%), Gaps = 14/191 (7%)
Query: 499 EDLASDVRAQNEFKDEAQSLSHS-PKRV----PTTLSIKPLGAISPVLNRKLAVGSHPLP 553
E++ S +A++ K++A++ PK+ P KP +K P
Sbjct: 791 EEVKSPEKAKSPLKEDAKAPEKEIPKKEEVKSPVKEEEKPQEVKVKEPPKKAEEEKAPAT 850
Query: 554 PKIQSKDGNKP--------PPLKTSEITDPAQVSKPTQGSAFKPPVPPRPQAKVPLPSAD 605
PK + K +K P K E +PA V KP + + KVP P +
Sbjct: 851 PKTEEKKDSKKEEAPKKEAPKPKVEEKKEPA-VEKPKESKVEAKKEEAEDKKKVPTPEKE 909
Query: 606 APNQAEPDVLVEKPEKVVPPPLVDKSAEKQAKNVDAIDDAAAPKQFLAKQEVAKDVTSET 665
AP + E + EK A+ + + A AAP++ K+E AK +
Sbjct: 910 APAKVEVKEDAKPKEKTEVAKKEPDDAKAKEPSKPAEKKEAAPEKKDTKEEKAKKPEEKP 969
Query: 666 SCPTKDSSDDR 676
K DD+
Sbjct: 970 KTEAKAKEDDK 980
Score = 33.5 bits (75), Expect = 1.2
Identities = 41/206 (19%), Positives = 81/206 (39%), Gaps = 10/206 (4%)
Query: 481 EAAGLTVDTESRELDSEFEDLASDVRAQNEFKDEAQSLSHSPKRVPTTLSIK---PLGAI 537
E A V E++ + + ++ ++ + K + + SP++ + + + P A
Sbjct: 664 EKAKSPVKAEAKSPEKAKSPVKAEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAK 723
Query: 538 SPVLNRKLAVGSHPLPPKIQSKDGNK---PPPLKTSEITDPAQVSKPTQGSAFKPPVPPR 594
SPV P K ++K K P KT ++ P + P + A P
Sbjct: 724 SPVKEEAKTPEKAKSPVKEEAKSPEKAKSPEKAKTLDVKSP-EAKTPAKEEARSPADKFP 782
Query: 595 PQAKVPLPS-ADAPNQAEPDVL--VEKPEKVVPPPLVDKSAEKQAKNVDAIDDAAAPKQF 651
+AK P+ +P +A+ + + PEK +P KS K+ + + PK+
Sbjct: 783 EKAKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKKEEVKSPVKEEEKPQEVKVKEPPKKA 842
Query: 652 LAKQEVAKDVTSETSCPTKDSSDDRQ 677
++ A T E K+ + ++
Sbjct: 843 EEEKAPATPKTEEKKDSKKEEAPKKE 868
Score = 33.1 bits (74), Expect = 1.6
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 17/133 (12%)
Query: 553 PPKIQSKDGNKPPPLKTSEITDPAQVSKPTQGSAFKPPVPPRPQAKVPLPSADAPNQAEP 612
P K ++K + + E PA+V P + + P + +AK P P A +P + E
Sbjct: 519 PVKEEAKSPAEAKSPEKEEAKSPAEVKSPEKAKS-----PAKEEAKSP-PEAKSPEKEE- 571
Query: 613 DVLVEKPEKVVPPPLVDKSAEKQAKNVDAIDDAAAPKQFLAKQEVAKDVTS--ETSCPTK 670
+ P +V P A+++AK+ +A +P++ AK V ++ S E P K
Sbjct: 572 ---AKSPAEVKSPEKAKSPAKEEAKSPA---EAKSPEK--AKSPVKEEAKSPAEAKSPVK 623
Query: 671 DSSDDRQTWESSE 683
+ + +S E
Sbjct: 624 EEAKSPAEVKSPE 636
>gi|20149588 Ras association domain family 1 isoform A [Homo
sapiens]
Length = 340
Score = 41.6 bits (96), Expect = 0.004
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 841 HSFQDTQFQNPTWCDYCKKKVW--TKAASQCMFCAYVCHKKCQEKCLAETSVCGATD 895
H FQ TWCD C +W + QC C + CH +C + L CG D
Sbjct: 52 HRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRC--RALVCLDCCGPRD 106
>gi|11386183 WAS protein family, member 2 [Homo sapiens]
Length = 498
Score = 41.6 bits (96), Expect = 0.004
Identities = 34/113 (30%), Positives = 44/113 (38%), Gaps = 14/113 (12%)
Query: 533 PLGAISPVLNRKLAVGSHPLPPKIQSKDGNKPPPLKTSEITDPAQVSKPTQGSAFKPPVP 592
P+G SP + S P P + PPP P +S+PT G A PP P
Sbjct: 338 PVGFGSPGTPPPPSPPSFPPHPDFAAPPPPPPPPAADYPTLPPPPLSQPT-GGAPPPPPP 396
Query: 593 PRPQAKVPLPSADAPNQAEPDVLVEKPEKVVPPPLVDKSAEKQAKNVDAIDDA 645
P P P P A Q +PPPL D + K ++ A+ DA
Sbjct: 397 PPPPGPPPPPFTGADGQ-----------PAIPPPLSDTT--KPKSSLPAVSDA 436
>gi|4502813 chimerin (chimaerin) 1 isoform a [Homo sapiens]
Length = 459
Score = 41.6 bits (96), Expect = 0.004
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 792 HFKYLKE--GESDHHVVTNVEKEKEPHLVEEVSVLPKEEQFVGQMGLTENKHSFQDTQFQ 849
H LKE E D V +++ LV ++ E Q+ E H+F+ F+
Sbjct: 160 HMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENE-----QIPKYEKIHNFKVHTFR 214
Query: 850 NPTWCDYCKKKVWTKAAS--QCMFCAYVCHKKCQE 882
P WC+YC +W A +C C HK+C +
Sbjct: 215 GPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSK 249
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,432,099
Number of Sequences: 37866
Number of extensions: 2376897
Number of successful extensions: 14264
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 435
Number of HSP's that attempted gapping in prelim test: 12307
Number of HSP's gapped (non-prelim): 1999
length of query: 1154
length of database: 18,247,518
effective HSP length: 113
effective length of query: 1041
effective length of database: 13,968,660
effective search space: 14541375060
effective search space used: 14541375060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.