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Search of human proteins with 29789255
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|29789255 c-Maf-inducing protein isoform Tc-mip [Homo
sapiens]
(679 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|29789255 c-Maf-inducing protein isoform Tc-mip [Homo sapiens] 1364 0.0
gi|194018550 c-Maf-inducing protein isoform C-mip [Homo sapiens] 1355 0.0
gi|4503743 flightless I homolog [Homo sapiens] 54 6e-07
gi|22748931 F-box and leucine-rich repeat protein 14 [Homo sapiens] 41 0.003
gi|118918429 NOD3 protein [Homo sapiens] 40 0.007
gi|19718734 toll-like receptor 2 [Homo sapiens] 36 0.13
gi|7662386 NLR family, pyrin domain containing 1 isoform 2 [Homo... 35 0.30
gi|14719835 NLR family, pyrin domain containing 1 isoform 4 [Hom... 35 0.30
gi|74271814 NLR family, pyrin domain containing 1 isoform 5 [Hom... 35 0.30
gi|14719833 NLR family, pyrin domain containing 1 isoform 3 [Hom... 35 0.30
gi|14719829 NLR family, pyrin domain containing 1 isoform 1 [Hom... 35 0.30
gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens] 34 0.39
gi|110624785 NACHT, leucine rich repeat and PYD containing 13 [H... 34 0.51
gi|16506299 leucine rich repeat containing 42 [Homo sapiens] 34 0.51
gi|4557669 interleukin 4 receptor alpha chain isoform a precurso... 33 0.87
gi|119395764 NLR family, pyrin domain containing 3 isoform a [Ho... 33 0.87
gi|188536002 NLR family, pyrin domain containing 3 isoform d [Ho... 33 0.87
gi|34878693 NLR family, pyrin domain containing 3 isoform a [Hom... 33 0.87
gi|238908508 leucine-rich repeat and death domain-containing pro... 33 1.1
gi|5174617 nucleotide-binding oligomerization domain containing ... 32 1.5
gi|109809759 leucine rich repeat transmembrane neuronal 3 [Homo ... 32 1.5
gi|46397369 leucine rich repeat containing 20 isoform 1 [Homo sa... 32 1.5
gi|24308211 integrator complex subunit 2 [Homo sapiens] 32 1.9
gi|158321897 NACHT, LRR and PYD containing protein 5 [Homo sapiens] 32 1.9
gi|46397373 leucine rich repeat containing 20 isoform 2 [Homo sa... 32 1.9
gi|219521831 adhesion molecule with Ig-like domain 2 [Homo sapiens] 32 2.5
gi|32469517 adhesion molecule with Ig-like domain 2 [Homo sapiens] 32 2.5
gi|33519450 NLR family, pyrin domain containing 9 [Homo sapiens] 31 3.3
gi|239749213 PREDICTED: mucin 3B, cell surface associated, parti... 31 4.3
gi|6631095 minichromosome maintenance complex component 3 [Homo ... 31 4.3
>gi|29789255 c-Maf-inducing protein isoform Tc-mip [Homo sapiens]
Length = 679
Score = 1364 bits (3531), Expect = 0.0
Identities = 679/679 (100%), Positives = 679/679 (100%)
Query: 1 MGQAAEPTGYMENSVSYSAIEDVQLLSWENAPKYCLQLTIPGGTVLLQAANSYLRDQWFH 60
MGQAAEPTGYMENSVSYSAIEDVQLLSWENAPKYCLQLTIPGGTVLLQAANSYLRDQWFH
Sbjct: 1 MGQAAEPTGYMENSVSYSAIEDVQLLSWENAPKYCLQLTIPGGTVLLQAANSYLRDQWFH 60
Query: 61 SLQWKKKIYKYKKVLSNPSRWEVVLKEIRTLVDMALTSPLQDDSINQAPLEIVSKLLSEN 120
SLQWKKKIYKYKKVLSNPSRWEVVLKEIRTLVDMALTSPLQDDSINQAPLEIVSKLLSEN
Sbjct: 61 SLQWKKKIYKYKKVLSNPSRWEVVLKEIRTLVDMALTSPLQDDSINQAPLEIVSKLLSEN 120
Query: 121 TNLTTQEHENIIVAIAPLLENNHPPPDLCEFFCKHCRERPRSMVVIEVFTPVVQRILKHN 180
TNLTTQEHENIIVAIAPLLENNHPPPDLCEFFCKHCRERPRSMVVIEVFTPVVQRILKHN
Sbjct: 121 TNLTTQEHENIIVAIAPLLENNHPPPDLCEFFCKHCRERPRSMVVIEVFTPVVQRILKHN 180
Query: 181 MDFGKCPRLRLFTQEYILALNELNAGMEVVKKFIQSMHGPTGHCPHPRVLPNLVAVCLAA 240
MDFGKCPRLRLFTQEYILALNELNAGMEVVKKFIQSMHGPTGHCPHPRVLPNLVAVCLAA
Sbjct: 181 MDFGKCPRLRLFTQEYILALNELNAGMEVVKKFIQSMHGPTGHCPHPRVLPNLVAVCLAA 240
Query: 241 IYSCYEEFINSRDNSPSLKEIRNGCQQPCDRKPTLPLRLLHPSPDLVSQEATLSEARLKS 300
IYSCYEEFINSRDNSPSLKEIRNGCQQPCDRKPTLPLRLLHPSPDLVSQEATLSEARLKS
Sbjct: 241 IYSCYEEFINSRDNSPSLKEIRNGCQQPCDRKPTLPLRLLHPSPDLVSQEATLSEARLKS 300
Query: 301 VVVASSEIHVEVERTSTAKPALTASAGNDSEPNLIDCLMVSPACSTMSIELGPQADRTLG 360
VVVASSEIHVEVERTSTAKPALTASAGNDSEPNLIDCLMVSPACSTMSIELGPQADRTLG
Sbjct: 301 VVVASSEIHVEVERTSTAKPALTASAGNDSEPNLIDCLMVSPACSTMSIELGPQADRTLG 360
Query: 361 CYVEILKLLSDYDDWRPSLASLLQPIPFPKEALAHEKFTKELKYVIQRFAEDPRQEVHSC 420
CYVEILKLLSDYDDWRPSLASLLQPIPFPKEALAHEKFTKELKYVIQRFAEDPRQEVHSC
Sbjct: 361 CYVEILKLLSDYDDWRPSLASLLQPIPFPKEALAHEKFTKELKYVIQRFAEDPRQEVHSC 420
Query: 421 LLSVRAGKDGWFQLYSPGGVACDDDGELFASMVHILMGSCYKTKKFLLSLAENKLGPCML 480
LLSVRAGKDGWFQLYSPGGVACDDDGELFASMVHILMGSCYKTKKFLLSLAENKLGPCML
Sbjct: 421 LLSVRAGKDGWFQLYSPGGVACDDDGELFASMVHILMGSCYKTKKFLLSLAENKLGPCML 480
Query: 481 LALRGNQTMVEILCLMLEYNIIDNNDTQLQIISTLESTDVGKRMYEQLCDRQRELKELQR 540
LALRGNQTMVEILCLMLEYNIIDNNDTQLQIISTLESTDVGKRMYEQLCDRQRELKELQR
Sbjct: 481 LALRGNQTMVEILCLMLEYNIIDNNDTQLQIISTLESTDVGKRMYEQLCDRQRELKELQR 540
Query: 541 KGGPTRLTLPSKSTDADLARLLSSGSFGNLENLSLAFTNVTSACAEHLIKLPSLKQLNLW 600
KGGPTRLTLPSKSTDADLARLLSSGSFGNLENLSLAFTNVTSACAEHLIKLPSLKQLNLW
Sbjct: 541 KGGPTRLTLPSKSTDADLARLLSSGSFGNLENLSLAFTNVTSACAEHLIKLPSLKQLNLW 600
Query: 601 STQFGDAGLRLLSEHLTMLQVLNLCETPVTDAGLLALSSMKSLCSLNMNSTKLSADTYED 660
STQFGDAGLRLLSEHLTMLQVLNLCETPVTDAGLLALSSMKSLCSLNMNSTKLSADTYED
Sbjct: 601 STQFGDAGLRLLSEHLTMLQVLNLCETPVTDAGLLALSSMKSLCSLNMNSTKLSADTYED 660
Query: 661 LKAKLPNLKEVDVRYTEAW 679
LKAKLPNLKEVDVRYTEAW
Sbjct: 661 LKAKLPNLKEVDVRYTEAW 679
>gi|194018550 c-Maf-inducing protein isoform C-mip [Homo sapiens]
Length = 773
Score = 1355 bits (3506), Expect = 0.0
Identities = 674/676 (99%), Positives = 675/676 (99%)
Query: 4 AAEPTGYMENSVSYSAIEDVQLLSWENAPKYCLQLTIPGGTVLLQAANSYLRDQWFHSLQ 63
+A PTGYMENSVSYSAIEDVQLLSWENAPKYCLQLTIPGGTVLLQAANSYLRDQWFHSLQ
Sbjct: 98 SATPTGYMENSVSYSAIEDVQLLSWENAPKYCLQLTIPGGTVLLQAANSYLRDQWFHSLQ 157
Query: 64 WKKKIYKYKKVLSNPSRWEVVLKEIRTLVDMALTSPLQDDSINQAPLEIVSKLLSENTNL 123
WKKKIYKYKKVLSNPSRWEVVLKEIRTLVDMALTSPLQDDSINQAPLEIVSKLLSENTNL
Sbjct: 158 WKKKIYKYKKVLSNPSRWEVVLKEIRTLVDMALTSPLQDDSINQAPLEIVSKLLSENTNL 217
Query: 124 TTQEHENIIVAIAPLLENNHPPPDLCEFFCKHCRERPRSMVVIEVFTPVVQRILKHNMDF 183
TTQEHENIIVAIAPLLENNHPPPDLCEFFCKHCRERPRSMVVIEVFTPVVQRILKHNMDF
Sbjct: 218 TTQEHENIIVAIAPLLENNHPPPDLCEFFCKHCRERPRSMVVIEVFTPVVQRILKHNMDF 277
Query: 184 GKCPRLRLFTQEYILALNELNAGMEVVKKFIQSMHGPTGHCPHPRVLPNLVAVCLAAIYS 243
GKCPRLRLFTQEYILALNELNAGMEVVKKFIQSMHGPTGHCPHPRVLPNLVAVCLAAIYS
Sbjct: 278 GKCPRLRLFTQEYILALNELNAGMEVVKKFIQSMHGPTGHCPHPRVLPNLVAVCLAAIYS 337
Query: 244 CYEEFINSRDNSPSLKEIRNGCQQPCDRKPTLPLRLLHPSPDLVSQEATLSEARLKSVVV 303
CYEEFINSRDNSPSLKEIRNGCQQPCDRKPTLPLRLLHPSPDLVSQEATLSEARLKSVVV
Sbjct: 338 CYEEFINSRDNSPSLKEIRNGCQQPCDRKPTLPLRLLHPSPDLVSQEATLSEARLKSVVV 397
Query: 304 ASSEIHVEVERTSTAKPALTASAGNDSEPNLIDCLMVSPACSTMSIELGPQADRTLGCYV 363
ASSEIHVEVERTSTAKPALTASAGNDSEPNLIDCLMVSPACSTMSIELGPQADRTLGCYV
Sbjct: 398 ASSEIHVEVERTSTAKPALTASAGNDSEPNLIDCLMVSPACSTMSIELGPQADRTLGCYV 457
Query: 364 EILKLLSDYDDWRPSLASLLQPIPFPKEALAHEKFTKELKYVIQRFAEDPRQEVHSCLLS 423
EILKLLSDYDDWRPSLASLLQPIPFPKEALAHEKFTKELKYVIQRFAEDPRQEVHSCLLS
Sbjct: 458 EILKLLSDYDDWRPSLASLLQPIPFPKEALAHEKFTKELKYVIQRFAEDPRQEVHSCLLS 517
Query: 424 VRAGKDGWFQLYSPGGVACDDDGELFASMVHILMGSCYKTKKFLLSLAENKLGPCMLLAL 483
VRAGKDGWFQLYSPGGVACDDDGELFASMVHILMGSCYKTKKFLLSLAENKLGPCMLLAL
Sbjct: 518 VRAGKDGWFQLYSPGGVACDDDGELFASMVHILMGSCYKTKKFLLSLAENKLGPCMLLAL 577
Query: 484 RGNQTMVEILCLMLEYNIIDNNDTQLQIISTLESTDVGKRMYEQLCDRQRELKELQRKGG 543
RGNQTMVEILCLMLEYNIIDNNDTQLQIISTLESTDVGKRMYEQLCDRQRELKELQRKGG
Sbjct: 578 RGNQTMVEILCLMLEYNIIDNNDTQLQIISTLESTDVGKRMYEQLCDRQRELKELQRKGG 637
Query: 544 PTRLTLPSKSTDADLARLLSSGSFGNLENLSLAFTNVTSACAEHLIKLPSLKQLNLWSTQ 603
PTRLTLPSKSTDADLARLLSSGSFGNLENLSLAFTNVTSACAEHLIKLPSLKQLNLWSTQ
Sbjct: 638 PTRLTLPSKSTDADLARLLSSGSFGNLENLSLAFTNVTSACAEHLIKLPSLKQLNLWSTQ 697
Query: 604 FGDAGLRLLSEHLTMLQVLNLCETPVTDAGLLALSSMKSLCSLNMNSTKLSADTYEDLKA 663
FGDAGLRLLSEHLTMLQVLNLCETPVTDAGLLALSSMKSLCSLNMNSTKLSADTYEDLKA
Sbjct: 698 FGDAGLRLLSEHLTMLQVLNLCETPVTDAGLLALSSMKSLCSLNMNSTKLSADTYEDLKA 757
Query: 664 KLPNLKEVDVRYTEAW 679
KLPNLKEVDVRYTEAW
Sbjct: 758 KLPNLKEVDVRYTEAW 773
>gi|4503743 flightless I homolog [Homo sapiens]
Length = 1269
Score = 53.5 bits (127), Expect = 6e-07
Identities = 67/222 (30%), Positives = 97/222 (43%), Gaps = 26/222 (11%)
Query: 467 LLSLAENKLGPCMLLALRGNQTMVEILCLMLEYNIIDNNDTQLQI-ISTLESTDVGKRMY 525
+L L+ N+L C R + +L L L +N ID QL I ++ L D+ +
Sbjct: 108 VLDLSHNQLTECP----RELENAKNMLVLNLSHNSIDTIPNQLFINLTDLLYLDLSENRL 163
Query: 526 EQLCDRQRELKELQR---KGGP------------TRL-TLPSKSTDADLARLLSS-GSFG 568
E L + R L LQ G P T L TL +ST + L +S
Sbjct: 164 ESLPPQMRRLVHLQTLVLNGNPLLHAQLRQLPAMTALQTLHLRSTQRTQSNLPTSLEGLS 223
Query: 569 NLENLSLAFTNVTSACAEHLIKLPSLKQLNLWSTQFGDAGLRLLSEHLTMLQVLNLCETP 628
NL ++ L+ ++T E L LPSL++LNL S Q + L L + ++ LNL
Sbjct: 224 NLADVDLSCNDLTRV-PECLYTLPSLRRLNLSSNQITE--LSLCIDQWVHVETLNLSRNQ 280
Query: 629 VTDAGLLALSSMKSLCSLNMNSTKLSADTYEDLKAKLPNLKE 670
+T A+ + L L +NS KL D KL NL+E
Sbjct: 281 LTSLP-SAICKLSKLKKLYLNSNKLDFDGLPSGIGKLTNLEE 321
>gi|22748931 F-box and leucine-rich repeat protein 14 [Homo sapiens]
Length = 418
Score = 41.2 bits (95), Expect = 0.003
Identities = 40/108 (37%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 552 KSTDADLARLLSSGSFGNLENLSLAFTNVTSACAEHLIKLPSLKQLNLWSTQ-FGDAGLR 610
KS + R LS G+L + T + AE + L+QL L Q D L+
Sbjct: 172 KSLNLRSCRHLSDVGIGHLAGM-------TRSAAEGCL---GLEQLTLQDCQKLTDLSLK 221
Query: 611 LLSEHLTMLQVLNLCETP-VTDAGLLALSSMKSLCSLNMNSTKLSADT 657
+S LT L++LNL ++DAGLL LS M SL SLN+ S +DT
Sbjct: 222 HISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDT 269
Score = 30.0 bits (66), Expect = 7.3
Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 9/155 (5%)
Query: 527 QLCDRQRELKELQRKGGPTRLTLPSKSTDADL--ARLLSSGSFGNLENLSL-AFTNVTSA 583
Q C + +L G T L L + S + A LL G+L +L+L + N++
Sbjct: 210 QDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDT 269
Query: 584 CAEHLIKLPSLKQLNL---WSTQFGDAGLRLLSEHLTMLQVLNLCETPVTDAGL-LALSS 639
HL + SL+ L + + GD L +++ L L+ L+LC ++D G+ +
Sbjct: 270 GIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQ 328
Query: 640 MKSLCSLNMNSTKLSADTYEDLKAK-LPNLKEVDV 673
M L +LN+ D +L A+ L L +D+
Sbjct: 329 MHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDL 363
>gi|118918429 NOD3 protein [Homo sapiens]
Length = 1065
Score = 40.0 bits (92), Expect = 0.007
Identities = 65/250 (26%), Positives = 106/250 (42%), Gaps = 46/250 (18%)
Query: 450 ASMVHILMGS--CYKTKKFLLSLAENKLGP-------CMLLALRGNQTMVEILCLMLEYN 500
A++ ++L S C + LSL++ L C L L NQ ++ L+ +
Sbjct: 602 AALAYLLQVSDACAQEANLSLSLSQGVLQSLLPQLLYCRKLRLDTNQFQDPVMELL--GS 659
Query: 501 IIDNNDTQLQIISTLES--TDVGKRMYEQLCDRQRELKELQRKG---GP----------- 544
++ D ++Q IS E+ ++ G + + R L L +G GP
Sbjct: 660 VLSGKDCRIQKISLAENQISNKGAKALARSLLVNRSLTSLDLRGNSIGPQGAKALADALK 719
Query: 545 -----TRLTLPSKSTDADLARLLSSGSFGN--LENLSLAFTNV----TSACAEHLIKLPS 593
T L+L + D AR ++ N L L L ++ A+ L + S
Sbjct: 720 INRTLTSLSLQGNTVRDDGARSMAEALASNRTLSMLHLQKNSIGPMGAQRMADALKQNRS 779
Query: 594 LKQLNLWSTQFGDAGLRLLSEHLTM---LQVLNLCETPVTDAGLLALSSMKSLCSLNMNS 650
LK+L S GD G + L+E L + L+ L+L ++DAG+ AL M +LC+ N
Sbjct: 780 LKELMFSSNSIGDGGAKALAEALKVNQGLESLDLQSNSISDAGVAAL--MGALCT---NQ 834
Query: 651 TKLSADTYED 660
T LS E+
Sbjct: 835 TLLSLSLREN 844
>gi|19718734 toll-like receptor 2 [Homo sapiens]
Length = 784
Score = 35.8 bits (81), Expect = 0.13
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 563 SSGSFGNLENLSLAFTNVTSACAEHLIKLPSLKQLNLWSTQFGDAGLRLLSEHLTMLQVL 622
S S G+LE+L L++ +++ + L SL LNL + G L HLT LQ+L
Sbjct: 95 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154
Query: 623 NL 624
+
Sbjct: 155 RV 156
>gi|7662386 NLR family, pyrin domain containing 1 isoform 2 [Homo
sapiens]
Length = 1429
Score = 34.7 bits (78), Expect = 0.30
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 570 LENLSLAFTNVTSACAEHLIKL----PSLKQLNLWSTQFGDAGLRLLSEHL 616
L+ L L +TS C + L + PSLK+L+L D G+RLL E L
Sbjct: 896 LQRLQLVSCGLTSDCCQDLASVLSASPSLKELDLQQNNLDDVGVRLLCEGL 946
>gi|14719835 NLR family, pyrin domain containing 1 isoform 4 [Homo
sapiens]
Length = 1399
Score = 34.7 bits (78), Expect = 0.30
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 570 LENLSLAFTNVTSACAEHLIKL----PSLKQLNLWSTQFGDAGLRLLSEHL 616
L+ L L +TS C + L + PSLK+L+L D G+RLL E L
Sbjct: 896 LQRLQLVSCGLTSDCCQDLASVLSASPSLKELDLQQNNLDDVGVRLLCEGL 946
>gi|74271814 NLR family, pyrin domain containing 1 isoform 5 [Homo
sapiens]
Length = 1375
Score = 34.7 bits (78), Expect = 0.30
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 570 LENLSLAFTNVTSACAEHLIKL----PSLKQLNLWSTQFGDAGLRLLSEHL 616
L+ L L +TS C + L + PSLK+L+L D G+RLL E L
Sbjct: 896 LQRLQLVSCGLTSDCCQDLASVLSASPSLKELDLQQNNLDDVGVRLLCEGL 946
>gi|14719833 NLR family, pyrin domain containing 1 isoform 3 [Homo
sapiens]
Length = 1443
Score = 34.7 bits (78), Expect = 0.30
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 570 LENLSLAFTNVTSACAEHLIKL----PSLKQLNLWSTQFGDAGLRLLSEHL 616
L+ L L +TS C + L + PSLK+L+L D G+RLL E L
Sbjct: 896 LQRLQLVSCGLTSDCCQDLASVLSASPSLKELDLQQNNLDDVGVRLLCEGL 946
>gi|14719829 NLR family, pyrin domain containing 1 isoform 1 [Homo
sapiens]
Length = 1473
Score = 34.7 bits (78), Expect = 0.30
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 570 LENLSLAFTNVTSACAEHLIKL----PSLKQLNLWSTQFGDAGLRLLSEHL 616
L+ L L +TS C + L + PSLK+L+L D G+RLL E L
Sbjct: 896 LQRLQLVSCGLTSDCCQDLASVLSASPSLKELDLQQNNLDDVGVRLLCEGL 946
>gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens]
Length = 1378
Score = 34.3 bits (77), Expect = 0.39
Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 20/174 (11%)
Query: 500 NIIDNNDTQLQIISTLESTDVGKRMYEQLC------DRQRELKELQRKGGPTRLTLPSKS 553
+++ +ND L +++ + + R Y + C + Q+ L+ ++ +G + S +
Sbjct: 995 DVLQSNDEVLAEVTSWDLPPLTDR-YRRACQSLGQGEHQQVLQAVELQGLGLSFSACSLA 1053
Query: 554 TD-ADLARLLSSGSFGN-LENLSLAFTNVTSACAEHLIK----LPSLKQLNLWSTQFGDA 607
D A L LL + L L LA + C L+ +PSL L+L S G
Sbjct: 1054 LDQAQLTPLLRALKLHTALRELRLAGNRLGDKCVAELVAALGTMPSLALLDLSSNHLGPE 1113
Query: 608 GLRLLS------EHLTMLQVLNLCETPVTDAGLLALSSMKSLCSLNMNSTKLSA 655
GLR L+ L L+ L+L P+ D +L+S+ C L +++ +L A
Sbjct: 1114 GLRQLAMGLPGQATLQSLEELDLSMNPLGDGCGQSLASLLHACPL-LSTLRLQA 1166
>gi|110624785 NACHT, leucine rich repeat and PYD containing 13 [Homo
sapiens]
Length = 1043
Score = 33.9 bits (76), Expect = 0.51
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 568 GNLENLSLAFTNVT-SACAEHLIKLP---SLKQLNLWSTQFGDAGLRLLSEHLT---MLQ 620
GNL++L+L+ + T C E L ++K L+L D G++LL E L L
Sbjct: 924 GNLQSLNLSGCSFTREGCGELANALSHNHNVKILDLGENDLQDDGVKLLCEALKPHRALH 983
Query: 621 VLNLCETPVTDAG----LLALSSMKSLCSLNMNSTKLSAD 656
L L + +T A LSS KSL +LN+ +L D
Sbjct: 984 TLGLAKCNLTTACCQHLFSVLSSSKSLVNLNLLGNELDTD 1023
Score = 31.6 bits (70), Expect = 2.5
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 570 LENLSLAFTNVTSACAEHLIKL----PSLKQLNLWSTQFGDAGLRLLSEHL 616
L L LA N+T+AC +HL + SL LNL + G+++L + L
Sbjct: 982 LHTLGLAKCNLTTACCQHLFSVLSSSKSLVNLNLLGNELDTDGVKMLCKAL 1032
>gi|16506299 leucine rich repeat containing 42 [Homo sapiens]
Length = 428
Score = 33.9 bits (76), Expect = 0.51
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 14/80 (17%)
Query: 586 EHLIK--LPSLKQLNLWSTQFGDAGLRLLS----------EHLTMLQVLNLCETPVTDAG 633
EHL L S+ QL+L DAG+R ++ E+LT+L + C +TDAG
Sbjct: 193 EHLTNEALSSVTQLHLKDNCLSDAGVRKMTAPVRVMKRGLENLTLLDLS--CNPEITDAG 250
Query: 634 LLALSSMKSLCSLNMNSTKL 653
+ L S + L L+++ T L
Sbjct: 251 IGYLFSFRKLNCLDISGTGL 270
>gi|4557669 interleukin 4 receptor alpha chain isoform a precursor
[Homo sapiens]
Length = 825
Score = 33.1 bits (74), Expect = 0.87
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 273 PTLPLRLLHPSPDLVSQEATLSEARLKSVVVASSEIHVEVERTSTAKPALTASAGNDSEP 332
PT PLR PSP V EA+L A L A S I + + +S+ PA + + P
Sbjct: 755 PTTPLRAPDPSPGGVPLEASLCPASL-----APSGISEKSKSSSSFHPAPGNAQSSSQTP 809
Query: 333 NLIDCLMVSPACSTMS 348
+++ + V P +S
Sbjct: 810 KIVNFVSVGPTYMRVS 825
>gi|119395764 NLR family, pyrin domain containing 3 isoform a [Homo
sapiens]
Length = 1036
Score = 33.1 bits (74), Expect = 0.87
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 569 NLENLSLAFTNVTSACAEHLIKLPSLKQ----LNLWSTQFGDAGLRLLSEHL----TMLQ 620
NL+ L L + +TS C L + S Q L L GD G++LL E L LQ
Sbjct: 885 NLQKLGLVNSGLTSVCCSALSSVLSTNQNLTHLYLRGNTLGDKGIKLLCEGLLHPDCKLQ 944
Query: 621 VLNLCETPVT-----DAGLLALSSMKSLCSLNMNSTKL 653
VL L +T D L L+S +SL L++ + L
Sbjct: 945 VLELDNCNLTSHCCWDLSTL-LTSSQSLRKLSLGNNDL 981
>gi|188536002 NLR family, pyrin domain containing 3 isoform d [Homo
sapiens]
Length = 979
Score = 33.1 bits (74), Expect = 0.87
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 569 NLENLSLAFTNVTSACAEHLIKLPSLKQ----LNLWSTQFGDAGLRLLSEHL----TMLQ 620
NL+ L L + +TS C L + S Q L L GD G++LL E L LQ
Sbjct: 828 NLQKLGLVNSGLTSVCCSALSSVLSTNQNLTHLYLRGNTLGDKGIKLLCEGLLHPDCKLQ 887
Query: 621 VLNLCETPVT-----DAGLLALSSMKSLCSLNMNSTKL 653
VL L +T D L L+S +SL L++ + L
Sbjct: 888 VLELDNCNLTSHCCWDLSTL-LTSSQSLRKLSLGNNDL 924
>gi|34878693 NLR family, pyrin domain containing 3 isoform a [Homo
sapiens]
Length = 1036
Score = 33.1 bits (74), Expect = 0.87
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 569 NLENLSLAFTNVTSACAEHLIKLPSLKQ----LNLWSTQFGDAGLRLLSEHL----TMLQ 620
NL+ L L + +TS C L + S Q L L GD G++LL E L LQ
Sbjct: 885 NLQKLGLVNSGLTSVCCSALSSVLSTNQNLTHLYLRGNTLGDKGIKLLCEGLLHPDCKLQ 944
Query: 621 VLNLCETPVT-----DAGLLALSSMKSLCSLNMNSTKL 653
VL L +T D L L+S +SL L++ + L
Sbjct: 945 VLELDNCNLTSHCCWDLSTL-LTSSQSLRKLSLGNNDL 981
>gi|238908508 leucine-rich repeat and death domain-containing
protein [Homo sapiens]
Length = 860
Score = 32.7 bits (73), Expect = 1.1
Identities = 48/191 (25%), Positives = 73/191 (38%), Gaps = 26/191 (13%)
Query: 500 NIIDNNDTQLQIISTLESTDVGKRMYEQLCDRQRELKEL--------QRKGGPTRLTLPS 551
N I+N + L+ + LE +GK + D LK L Q P L
Sbjct: 244 NYIENFPSDLECLGNLEILSLGKNKLRHIPDTLPSLKTLRVLNLEYNQLTTFPKALCFLP 303
Query: 552 KSTDADL-ARLLSS-----GSFGNLENLSLAFTNVTSACAEHLIKLPSLKQLNLWSTQFG 605
K DL L+SS NLE L + +T E + +L +K+L Q
Sbjct: 304 KLISLDLTGNLISSLPKEIRELKNLETLLMDHNKLTFLAVE-IFQLLKIKEL-----QLA 357
Query: 606 DAGLRLLSEHLTMLQVLNLCETPVTDAGLLALSSMKSLCSLNMNSTKLSADTYEDLKA-- 663
D L ++S + + L + + D LL K C + LS + +L
Sbjct: 358 DNKLEVISHKIENFRELRIL---ILDKNLLKNIPEKISCCAMLECLSLSDNKLTELPKYI 414
Query: 664 -KLPNLKEVDV 673
KL NL+++ V
Sbjct: 415 HKLNNLRKLHV 425
>gi|5174617 nucleotide-binding oligomerization domain containing 1
[Homo sapiens]
Length = 953
Score = 32.3 bits (72), Expect = 1.5
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 594 LKQLNLWSTQFGDAGLRLLSEHLTMLQV---LNLCETPVTDAG----LLALSSMKSLCSL 646
L L L Q D G+++LSE LT ++ L L +TD G L K L L
Sbjct: 730 LTVLRLSVNQITDGGVKVLSEELTKYKIVTYLGLYNNQITDVGARYVTKILDECKGLTHL 789
Query: 647 NMNSTKLSADTYEDLKAKLPNLKEV 671
+ K++++ + L + N K +
Sbjct: 790 KLGKNKITSEGGKYLALAVKNSKSI 814
>gi|109809759 leucine rich repeat transmembrane neuronal 3 [Homo
sapiens]
Length = 581
Score = 32.3 bits (72), Expect = 1.5
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 569 NLENLSLAFTNVTSACAEHLIKLPSLKQLNLWSTQFGDAGLRLLSEHLTMLQVLNLCETP 628
NLE L L + + S + LK+L+L QF L L L LQ L L
Sbjct: 182 NLELLDLGYNRIRSLARNVFAGMIRLKELHLEHNQFSKLNLALF-PRLVSLQNLYLQWNK 240
Query: 629 VTDAGLLALSSMKSLCSLNMNSTKLSADTYEDLKAKLPNLKEVDV 673
++ G + SL L+++ ++ A + + +PNL+ +++
Sbjct: 241 ISVIGQTMSWTWSSLQRLDLSGNEIEAFSGPSVFQCVPNLQRLNL 285
>gi|46397369 leucine rich repeat containing 20 isoform 1 [Homo
sapiens]
Length = 184
Score = 32.3 bits (72), Expect = 1.5
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 566 SFGNLENLSLAFTNVTSACAEHLIKLPSLKQLNLWSTQFGDAGLRLLSEHLTMLQVLNLC 625
+F L L L N + L LK ++L QF D +L + L L+ +NL
Sbjct: 72 TFSQLRELHLE-GNFLHRLPSEVSALQHLKAIDLSRNQFQDFPEQLTA--LPALETINLE 128
Query: 626 ETPVTDAGLLALSSMKSLCSLNMNSTKLSAD 656
E + D + L++M +L S+N+ L+A+
Sbjct: 129 ENEIVDVPVEKLAAMPALRSINLRFNPLNAE 159
>gi|24308211 integrator complex subunit 2 [Homo sapiens]
Length = 1204
Score = 32.0 bits (71), Expect = 1.9
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 586 EHLIKLPSLKQLNLWSTQFGDAGLRLLSEHLTMLQVLNLCETPVTDAGLLALSSMKSLCS 645
EH++K +L L L+ G AGL+ E L L P T AG+ +S S C
Sbjct: 380 EHVVKASAL--LRLYCALMGIAGLKPTEEEAEQLLQLMTSRPPATPAGVRFVS--LSFCM 435
Query: 646 LNMNSTKLSADTYEDL 661
L ST +S E L
Sbjct: 436 LLAFSTLVSTPEQEQL 451
>gi|158321897 NACHT, LRR and PYD containing protein 5 [Homo sapiens]
Length = 1200
Score = 32.0 bits (71), Expect = 1.9
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 12/96 (12%)
Query: 570 LENLSLAFTNVTSAC----AEHLIKLPSLKQLNLWSTQFGDAGLRLLSEHLTM----LQV 621
LE+L L +T AC ++ L PSLK L+L + D G+ LS+ L + LQ
Sbjct: 868 LESLRLDCCGLTHACYLKISQILTTSPSLKSLSLAGNKVTDQGVMPLSDALRVSQCALQK 927
Query: 622 LNLCETPVTDAGLLALSSM----KSLCSLNMNSTKL 653
L L + +T G +L+S +SL L +++ L
Sbjct: 928 LILEDCGITATGCQSLASALVSNRSLTHLCLSNNSL 963
Score = 30.8 bits (68), Expect = 4.3
Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 5/162 (3%)
Query: 226 HPR-VLPNLVAVCLAAIYSCYEEFINSRDNSPSLKEIRNGCQQPCDRKPTLPLRLLHPSP 284
HP+ +L +L C ++CY + SPSLK + + D + +PL
Sbjct: 863 HPKCLLESLRLDCCGLTHACYLKISQILTTSPSLKSLSLAGNKVTD-QGVMPLSDALRVS 921
Query: 285 DLVSQEATLSEARLKSVVVASSEIHVEVERTSTAKPALTASAGNDSEPNLIDCLMVSPAC 344
Q+ L + + + S + R+ T S GN+ NL+ M P C
Sbjct: 922 QCALQKLILEDCGITATGCQSLASALVSNRSLTHLCLSNNSLGNEG-VNLLCRSMRLPHC 980
Query: 345 STMSIELGPQADRTLGCYVEILKLLSDYDDWRPSLASLLQPI 386
S + L T GC L L+ + W L+ + P+
Sbjct: 981 SLQRLMLNQCHLDTAGCGFLALALMG--NSWLTHLSLSMNPV 1020
>gi|46397373 leucine rich repeat containing 20 isoform 2 [Homo
sapiens]
Length = 134
Score = 32.0 bits (71), Expect = 1.9
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 591 LPSLKQLNLWSTQFGDAGLRLLSEHLTMLQVLNLCETPVTDAGLLALSSMKSLCSLNMNS 650
L LK ++L QF D +L + L L+ +NL E + D + L++M +L S+N+
Sbjct: 46 LQHLKAIDLSRNQFQDFPEQLTA--LPALETINLEENEIVDVPVEKLAAMPALRSINLRF 103
Query: 651 TKLSAD 656
L+A+
Sbjct: 104 NPLNAE 109
>gi|219521831 adhesion molecule with Ig-like domain 2 [Homo sapiens]
Length = 522
Score = 31.6 bits (70), Expect = 2.5
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Query: 566 SFGNLENLSLAFTNVTSACAEHLIKLPSLKQLNLWSTQFGDAGLRLLSEHLTMLQVLNLC 625
SF L L L N+TS P+LK L+L S + + E L +L+VL L
Sbjct: 91 SFAKLNTLILRHNNITSISTGSFSTTPNLKCLDLSSNKLKTVKNAVFQE-LKVLEVLLLY 149
Query: 626 ETPVTDAGLLALSSMKSLCSLNMNS---TKLSADTYEDLKAKLPNLKEVDVRY 675
++ A + L L ++ T+ D Y + KL L +DV Y
Sbjct: 150 NNHISYLDPSAFGGLSQLQKLYLSGNFLTQFPMDLYVG-RFKLAELMFLDVSY 201
>gi|32469517 adhesion molecule with Ig-like domain 2 [Homo sapiens]
Length = 522
Score = 31.6 bits (70), Expect = 2.5
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Query: 566 SFGNLENLSLAFTNVTSACAEHLIKLPSLKQLNLWSTQFGDAGLRLLSEHLTMLQVLNLC 625
SF L L L N+TS P+LK L+L S + + E L +L+VL L
Sbjct: 91 SFAKLNTLILRHNNITSISTGSFSTTPNLKCLDLSSNKLKTVKNAVFQE-LKVLEVLLLY 149
Query: 626 ETPVTDAGLLALSSMKSLCSLNMNS---TKLSADTYEDLKAKLPNLKEVDVRY 675
++ A + L L ++ T+ D Y + KL L +DV Y
Sbjct: 150 NNHISYLDPSAFGGLSQLQKLYLSGNFLTQFPMDLYVG-RFKLAELMFLDVSY 201
>gi|33519450 NLR family, pyrin domain containing 9 [Homo sapiens]
Length = 991
Score = 31.2 bits (69), Expect = 3.3
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 594 LKQLNLWSTQFGDAGLRLLSEHL----TMLQVLNLCETPVT----DAGLLALSSMKSLCS 645
LK L L + GD G+R L L L+ L L P+T D AL + K+L S
Sbjct: 858 LKTLKLGHNEIGDTGVRQLCAALQHPHCKLECLGLQTCPITRACCDDIAAALIACKTLRS 917
Query: 646 LNMNSTKLSAD 656
LN++ L AD
Sbjct: 918 LNLDWIALDAD 928
>gi|239749213 PREDICTED: mucin 3B, cell surface associated, partial
[Homo sapiens]
Length = 1063
Score = 30.8 bits (68), Expect = 4.3
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 11/108 (10%)
Query: 254 NSPSLKEIRNGCQQPCDRKPTLPLRLLHPSPDLVSQEATLSEARLKSVVVASSEIHVEVE 313
+S S+ + R+ P T P H +P +S T + SS IH V
Sbjct: 133 SSNSITDSRSHSTPPFTSSVTTPEMTSHNTPSFMSSIITTETTSHSTPSFTSSTIHSTVS 192
Query: 314 RTSTA--KPALTASAGNDSEPNLIDCLMVSPACSTMSIELGPQADRTL 359
++TA P TA G S P+ SP S++S ++ + RTL
Sbjct: 193 SSTTAITSPFTTAETGVTSTPS-------SP--SSLSTDIPTTSLRTL 231
>gi|6631095 minichromosome maintenance complex component 3 [Homo
sapiens]
Length = 808
Score = 30.8 bits (68), Expect = 4.3
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 288 SQEATLSEARLKSVVVASSEIHVEVERTSTAKPALTASAGNDSE 331
SQ+ LSE+RLK+ VA ++ E S LT S DSE
Sbjct: 734 SQKVELSESRLKAFKVALLDVFREAHAQSIGMNRLTESINRDSE 777
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,514,292
Number of Sequences: 37866
Number of extensions: 1184113
Number of successful extensions: 3097
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 3025
Number of HSP's gapped (non-prelim): 129
length of query: 679
length of database: 18,247,518
effective HSP length: 109
effective length of query: 570
effective length of database: 14,120,124
effective search space: 8048470680
effective search space used: 8048470680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.