Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LRRC42 Sequence: fasta or formatted (428aa) NCBI GI: 16506299
Description:

leucine rich repeat containing 42

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         26           3
 C cysteine            3.0         13           2
 D aspartate           5.1         22           2
 E glutamate           8.6         37           2
 F phenylalanine       4.2         18           1
 G glycine             4.9         21           1
 H histidine           3.3         14           1
 I isoleucine          3.5         15           1
 K lysine              8.2         35           2
 L leucine            12.4         53           2
 M methionine          1.6          7           1
 N asparagine          4.0         17           2
 P proline             4.2         18           1
 Q glutamine           3.5         15           1
 R arginine            5.6         24           1
 S serine              8.9         38           2
 T threonine           4.7         20           1
 V valine              4.7         20           1
 W tryptophan          0.7          3           1
 Y tyrosine            2.8         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat containing 42 
FBXL13                0.023   F-box and leucine-rich repeat protein 13 isoform 2 ...
FBXL13                0.023   F-box and leucine-rich repeat protein 13 isoform 1 ...
FBXL14                0.015   F-box and leucine-rich repeat protein 14 
RNH1                  0.015   ribonuclease/angiogenin inhibitor 
RNH1                  0.015   ribonuclease/angiogenin inhibitor 
RNH1                  0.015   ribonuclease/angiogenin inhibitor 
RNH1                  0.015   ribonuclease/angiogenin inhibitor 
RNH1                  0.015   ribonuclease/angiogenin inhibitor 
RNH1                  0.015   ribonuclease/angiogenin inhibitor 
RNH1                  0.015   ribonuclease/angiogenin inhibitor 
RNH1                  0.015   ribonuclease/angiogenin inhibitor 
CMIP                  0.011   c-Maf-inducing protein isoform C-mip 
CMIP                  0.011   c-Maf-inducing protein isoform Tc-mip 
CIR1                  0.010   CBF1 interacting corepressor 
ITPKC                 0.010   inositol 1,4,5-trisphosphate 3-kinase C 
TLR8                  0.010   toll-like receptor 8 
NLRP3                 0.010   NLR family, pyrin domain containing 3 isoform c [Ho...
TPX2                  0.010   TPX2, microtubule-associated protein homolog 
NLRP3                 0.008   NLR family, pyrin domain containing 3 isoform b [Hom...
KDM2A                 0.008   F-box and leucine-rich repeat protein 11 
TSKU                  0.008   tsukushin 
FBXL16                0.008   F-box and leucine-rich repeat protein 16 
PPP1R7                0.008   protein phosphatase 1, regulatory subunit 7 
SFRS12IP1             0.008   P18SRP protein 
TRDN                  0.007   triadin 
C22orf36              0.007   hypothetical protein LOC388886 
TAF3                  0.006   RNA polymerase II transcription factor TAFII140 [Ho...
E2F7                  0.006   E2F transcription factor 7 
HOOK2                 0.006   hook homolog 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press