Guide to the Human Genome
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Name: TTC36 Sequence: fasta or formatted (189aa) NCBI GI: 122937279
Description:

tetratricopeptide repeat domain 36

Referenced in:

Tetratricopeptide Domains

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.3         27           2
 C cysteine            1.1          2           1
 D aspartate           7.4         14           3
 E glutamate           9.0         17           2
 F phenylalanine       3.7          7           1
 G glycine             8.5         16           2
 H histidine           0.0          0           0
 I isoleucine          1.6          3           1
 K lysine              1.1          2           1
 L leucine            12.7         24           2
 M methionine          2.6          5           2
 N asparagine          3.2          6           2
 P proline             4.2          8           1
 Q glutamine           7.4         14           1
 R arginine           12.7         24           2
 S serine              3.7          7           1
 T threonine           1.6          3           1
 V valine              4.2          8           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tetratricopeptide repeat domain 36 
STIP1                 0.052   stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi...
DNAJC3                0.049   DnaJ (Hsp40) homolog, subfamily C, member 3 
PPP5C                 0.049   protein phosphatase 5, catalytic subunit 
OGT                   0.047   O-linked GlcNAc transferase isoform 2 
OGT                   0.047   O-linked GlcNAc transferase isoform 1 
SGTA                  0.044   small glutamine-rich tetratricopeptide 
TTC1                  0.044   tetratricopeptide repeat domain 1 
TTC32                 0.044   tetratricopeptide repeat domain 32 
TTC31                 0.041   tetratricopeptide repeat domain 31 
MYH8                  0.038   myosin, heavy chain 8, skeletal muscle, perinatal [...
SPAG1                 0.032   sperm associated antigen 1 
SPAG1                 0.032   sperm associated antigen 1 
TTC13                 0.029   tetratricopeptide repeat domain 13 isoform b 
TTC13                 0.029   tetratricopeptide repeat domain 13 isoform a 
TANC2                 0.026   tetratricopeptide repeat, ankyrin repeat and coiled...
SGTB                  0.026   small glutamine-rich tetratricopeptide repeat (TPR)-...
MYH14                 0.023   myosin, heavy chain 14 isoform 1 
MYH14                 0.023   myosin, heavy chain 14 isoform 2 
MYH14                 0.023   myosin, heavy chain 14 isoform 3 
SCN3A                 0.023   sodium channel, voltage-gated, type III, alpha isof...
SCN3A                 0.023   sodium channel, voltage-gated, type III, alpha isof...
SCN3A                 0.023   sodium channel, voltage-gated, type III, alpha isof...
TOMM34                0.023   translocase of outer mitochondrial membrane 34 [Homo...
MYH2                  0.020   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.020   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH4                  0.020   myosin, heavy polypeptide 4, skeletal muscle 
MYH1                  0.020   myosin, heavy chain 1, skeletal muscle, adult [Homo...
TBC1D12               0.020   TBC1 domain family, member 12 
TTC12                 0.020   tetratricopeptide repeat domain 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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