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Search of human proteins with 122937223
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|122937223 NOBOX oogenesis homeobox [Homo sapiens]
(490 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|122937223 NOBOX oogenesis homeobox [Homo sapiens] 1012 0.0
gi|24497589 aristaless related homeobox [Homo sapiens] 67 3e-11
gi|24497513 homeobox A3 isoform a [Homo sapiens] 67 5e-11
gi|13562112 homeobox A3 isoform a [Homo sapiens] 67 5e-11
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 65 1e-10
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 65 2e-10
gi|11056038 visual system homeobox 1 isoform a [Homo sapiens] 64 2e-10
gi|46249382 paired-like homeobox 2a [Homo sapiens] 64 2e-10
gi|34365783 visual system homeobox 2 [Homo sapiens] 64 4e-10
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 62 9e-10
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 62 9e-10
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 62 9e-10
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 62 9e-10
gi|113204604 aristaless-like homeobox 3 [Homo sapiens] 62 2e-09
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 61 2e-09
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 61 2e-09
gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens] 61 2e-09
gi|14149760 orthopedia homeobox [Homo sapiens] 61 2e-09
gi|55743092 aristaless-like homeobox 4 [Homo sapiens] 60 3e-09
gi|14249388 retina and anterior neural fold homeobox 2 [Homo sap... 60 4e-09
gi|189083681 paired box gene 6 isoform a [Homo sapiens] 60 6e-09
gi|4580424 paired box gene 6 isoform b [Homo sapiens] 60 6e-09
gi|4505615 paired box gene 6 isoform a [Homo sapiens] 60 6e-09
gi|122937321 UNC homeobox [Homo sapiens] 60 6e-09
gi|12707580 paired-like homeobox 2b [Homo sapiens] 59 1e-08
gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens] 58 2e-08
gi|27777663 goosecoid [Homo sapiens] 58 2e-08
gi|21361183 paired-like homeodomain transcription factor 2 isofo... 58 2e-08
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 58 2e-08
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 58 2e-08
>gi|122937223 NOBOX oogenesis homeobox [Homo sapiens]
Length = 490
Score = 1012 bits (2617), Expect = 0.0
Identities = 490/490 (100%), Positives = 490/490 (100%)
Query: 1 MALLLTLTSPDLEGTWDTRDKDGFKAQEGPPLAVPEFPVCGLYRIYGVCGSFSSFFIIRC 60
MALLLTLTSPDLEGTWDTRDKDGFKAQEGPPLAVPEFPVCGLYRIYGVCGSFSSFFIIRC
Sbjct: 1 MALLLTLTSPDLEGTWDTRDKDGFKAQEGPPLAVPEFPVCGLYRIYGVCGSFSSFFIIRC 60
Query: 61 SLCALETLKSPQHDPLEIPEQSLKLIPLVSGKRELTRGQKAGEKPLAAGPGEEELLRGSA 120
SLCALETLKSPQHDPLEIPEQSLKLIPLVSGKRELTRGQKAGEKPLAAGPGEEELLRGSA
Sbjct: 61 SLCALETLKSPQHDPLEIPEQSLKLIPLVSGKRELTRGQKAGEKPLAAGPGEEELLRGSA 120
Query: 121 PHAQDTQSEELPPSCTISGEKKPPAVSGEATGADAGRLCPPPRSRAPHKDRTLARSRPQT 180
PHAQDTQSEELPPSCTISGEKKPPAVSGEATGADAGRLCPPPRSRAPHKDRTLARSRPQT
Sbjct: 121 PHAQDTQSEELPPSCTISGEKKPPAVSGEATGADAGRLCPPPRSRAPHKDRTLARSRPQT 180
Query: 181 QGEDCSLPVGEVKIGKRSYSPAPGKQKKPNAMGLAPTSSPGAPNSARATHNPVPCGSGRG 240
QGEDCSLPVGEVKIGKRSYSPAPGKQKKPNAMGLAPTSSPGAPNSARATHNPVPCGSGRG
Sbjct: 181 QGEDCSLPVGEVKIGKRSYSPAPGKQKKPNAMGLAPTSSPGAPNSARATHNPVPCGSGRG 240
Query: 241 PCHLANLLSTLAQSNQNRDHKQGPPEVTCQIRKKTRTLYRSDQLEELEKIFQEDHYPDSD 300
PCHLANLLSTLAQSNQNRDHKQGPPEVTCQIRKKTRTLYRSDQLEELEKIFQEDHYPDSD
Sbjct: 241 PCHLANLLSTLAQSNQNRDHKQGPPEVTCQIRKKTRTLYRSDQLEELEKIFQEDHYPDSD 300
Query: 301 KRREIAQTVGVTPQRIMVKGAGSLVAGWSGGGPTIETLELQSERSAVAWVWFQNRRAKWR 360
KRREIAQTVGVTPQRIMVKGAGSLVAGWSGGGPTIETLELQSERSAVAWVWFQNRRAKWR
Sbjct: 301 KRREIAQTVGVTPQRIMVKGAGSLVAGWSGGGPTIETLELQSERSAVAWVWFQNRRAKWR 360
Query: 361 KMEKLNGKESKDNPAAPGPASSQCSSAAEILPAVPMEPKPDPFPQESPLDTFPEPPMLLT 420
KMEKLNGKESKDNPAAPGPASSQCSSAAEILPAVPMEPKPDPFPQESPLDTFPEPPMLLT
Sbjct: 361 KMEKLNGKESKDNPAAPGPASSQCSSAAEILPAVPMEPKPDPFPQESPLDTFPEPPMLLT 420
Query: 421 SDQTLAPTQPSEGAQRVVTPPLFSPPPVRRADLPFPLGPVHTPQLMPLLMDVAGSDSSHK 480
SDQTLAPTQPSEGAQRVVTPPLFSPPPVRRADLPFPLGPVHTPQLMPLLMDVAGSDSSHK
Sbjct: 421 SDQTLAPTQPSEGAQRVVTPPLFSPPPVRRADLPFPLGPVHTPQLMPLLMDVAGSDSSHK 480
Query: 481 DGPCGSWGTR 490
DGPCGSWGTR
Sbjct: 481 DGPCGSWGTR 490
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 67.4 bits (163), Expect = 3e-11
Identities = 60/190 (31%), Positives = 73/190 (38%), Gaps = 59/190 (31%)
Query: 272 RKKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMVKGAGSLVAGWSGG 331
+++ RT + S QLEELE+ FQ+ HYPD R E+A + +T R+
Sbjct: 328 QRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ-------------- 373
Query: 332 GPTIETLELQSERSAVAWVWFQNRRAKWRKMEKLNGKESKDNPAAPGPASSQCSSAAEIL 391
VWFQNRRAKWRK EK + PGP S+
Sbjct: 374 ------------------VWFQNRRAKWRKREKAGAQTHPPGLPFPGPLSA--------- 406
Query: 392 PAVPMEPKPDPFPQESPLDTFPEPPMLLTSDQTLAPTQPSEGAQRVVTPPLFSPPPVRRA 451
P+ P D P FP L S T A A P L PPP A
Sbjct: 407 -THPLSPYLDASP-------FPPHHPALDSAWTAA-----AAAAAAAFPSL--PPPPGSA 451
Query: 452 DLP---FPLG 458
LP PLG
Sbjct: 452 SLPPSGAPLG 461
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 66.6 bits (161), Expect = 5e-11
Identities = 76/321 (23%), Positives = 117/321 (36%), Gaps = 63/321 (19%)
Query: 123 AQDTQSEELPPSCTIS--GEKKPPAVSGEATGADAGRLCPPPRSRAPHKDRTLARSRPQT 180
A + + P S + GE PA S ++ + G S A + + S+P +
Sbjct: 25 AYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPPS 84
Query: 181 QGEDCSLPVGEVKIGKRSYSPAPGKQKK-PNAMGLAPTSSPGAPNSARATHNPVPCGSGR 239
GE P P P Q P P SS P +A ++NP P + +
Sbjct: 85 LGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNA--SNNPTPANAAK 142
Query: 240 GPCHLA-----NLLSTLAQSNQNRDHK-------------QGPPEVTCQIRKKTRTLYRS 281
P + + + +S QN K + PP K+ RT Y S
Sbjct: 143 SPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASS--KRARTAYTS 200
Query: 282 DQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMVKGAGSLVAGWSGGGPTIETLELQ 341
QL ELEK F + Y +R E+A + +T ++I
Sbjct: 201 AQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIK------------------------ 236
Query: 342 SERSAVAWVWFQNRRAKWRKMEK------LNGKESKDNPAAPGPASSQCSSAAEILPAVP 395
+WFQNRR K++K +K +G +S P A +S ++ +VP
Sbjct: 237 --------IWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVP 288
Query: 396 MEPKPDPFPQESPLDTFPEPP 416
EP+ P + P T+ PP
Sbjct: 289 YEPQSPPPFSKPPQGTYGLPP 309
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 66.6 bits (161), Expect = 5e-11
Identities = 76/321 (23%), Positives = 117/321 (36%), Gaps = 63/321 (19%)
Query: 123 AQDTQSEELPPSCTIS--GEKKPPAVSGEATGADAGRLCPPPRSRAPHKDRTLARSRPQT 180
A + + P S + GE PA S ++ + G S A + + S+P +
Sbjct: 25 AYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPPS 84
Query: 181 QGEDCSLPVGEVKIGKRSYSPAPGKQKK-PNAMGLAPTSSPGAPNSARATHNPVPCGSGR 239
GE P P P Q P P SS P +A ++NP P + +
Sbjct: 85 LGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNA--SNNPTPANAAK 142
Query: 240 GPCHLA-----NLLSTLAQSNQNRDHK-------------QGPPEVTCQIRKKTRTLYRS 281
P + + + +S QN K + PP K+ RT Y S
Sbjct: 143 SPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASS--KRARTAYTS 200
Query: 282 DQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMVKGAGSLVAGWSGGGPTIETLELQ 341
QL ELEK F + Y +R E+A + +T ++I
Sbjct: 201 AQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIK------------------------ 236
Query: 342 SERSAVAWVWFQNRRAKWRKMEK------LNGKESKDNPAAPGPASSQCSSAAEILPAVP 395
+WFQNRR K++K +K +G +S P A +S ++ +VP
Sbjct: 237 --------IWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVP 288
Query: 396 MEPKPDPFPQESPLDTFPEPP 416
EP+ P + P T+ PP
Sbjct: 289 YEPQSPPPFSKPPQGTYGLPP 309
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 65.5 bits (158), Expect = 1e-10
Identities = 79/299 (26%), Positives = 116/299 (38%), Gaps = 65/299 (21%)
Query: 193 KIGKRSYSP-APGKQKKPNAMGLAPTSSPGAPNSARATHNPVP-CGSGRGPCHLANLLST 250
++G R P AP + +P S P AP A P P C G + L
Sbjct: 66 RLGARPACPKAPEEGSEP--------SPPPAPAPAPEYEAPRPYCPKEPGEARPSPGLPV 117
Query: 251 LAQSNQNRDHKQGPPEVTCQIRKKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVG 310
+ + + ++ P+ + ++ RT + + QL ELE+ F++ HYPD R E+A V
Sbjct: 118 GPATGEAKLSEEEQPK---KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVN 174
Query: 311 VTPQRIMVKGAGSLVAGWSGGGPTIETLELQSERSAVAWVWFQNRRAKWRKMEKLNGKES 370
+ R+ V WFQNRRAKWR+ EKL
Sbjct: 175 LPEVRVQV--------------------------------WFQNRRAKWRRQEKLEVSSM 202
Query: 371 K--DNPAAPGPASSQCSSAAEILPAVPMEPKPDPFPQESPLDTFPEPPMLLTSDQTLAPT 428
K D+P + S S+ L A P P PL+++ PP+
Sbjct: 203 KLQDSPLL-SFSRSPPSATLSPLGAGP-GSGGGPAGGALPLESWLGPPL----------- 249
Query: 429 QPSEGAQRVVTPPLFSPP----PVRRADLPFPLGPVHTPQLMPLLMDVAGSDSSHKDGP 483
P GA + + P F PP P P P +++P L P L +A S+ GP
Sbjct: 250 -PGGGATALQSLPGFGPPAQSLPASYTPPPPPPPFLNSPPLGPGLQPLAPPPPSYPCGP 307
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
sapiens]
Length = 406
Score = 64.7 bits (156), Expect = 2e-10
Identities = 59/222 (26%), Positives = 80/222 (36%), Gaps = 58/222 (26%)
Query: 264 PPEVTCQIRKKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMVKGAGS 323
PPE +++ RT + QL+ELE F E YPD R +A + +T R+ V
Sbjct: 135 PPER----KRRRRTAFTQFQLQELENFFDESQYPDVVARERLAARLNLTEDRVQV----- 185
Query: 324 LVAGWSGGGPTIETLELQSERSAVAWVWFQNRRAKWRKMEK---LNGKESKD--NP---- 374
WFQNRRAKW++ ++ L + D +P
Sbjct: 186 ---------------------------WFQNRRAKWKRNQRVLMLRNTATADLAHPLDMF 218
Query: 375 ------AAPGPASSQCSSAA------EILPAVPMEPKPDPFPQESPLDTFPEPPML-LTS 421
AAP + C +LP PM P+P P P PPM +
Sbjct: 219 LGGAYYAAPALDPALCVHLVPQLPRPPVLPVPPMPPRPPMVPMPPRPPIAPMPPMAPVPP 278
Query: 422 DQTLAPTQPSEGAQRVVTPPLFSPPPVRRADLPFPLGPVHTP 463
+AP P V P +P P P P GP P
Sbjct: 279 GSRMAPVPPGPRMAPVPPWPPMAPVPPWPPMAPVPTGPPMAP 320
>gi|11056038 visual system homeobox 1 isoform a [Homo sapiens]
Length = 365
Score = 64.3 bits (155), Expect = 2e-10
Identities = 70/261 (26%), Positives = 96/261 (36%), Gaps = 52/261 (19%)
Query: 115 LLRGSAPHAQDTQSEELPPSCTISGEKKPPAVSGEATGADAGRLCPPPRSRAPHKD-RTL 173
L+ G +P + + + E PA G+ +G + + P P P D +L
Sbjct: 17 LVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAVAPCP---GPGLDGSSL 73
Query: 174 ARSRPQTQGEDCSLPVGEVKIGKRSYSPAPGKQKKPNAMGLAPTSSPGAPNSAR--ATHN 231
AR +LP+G + P + + P P P A A
Sbjct: 74 ARG---------ALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPLAPSR 124
Query: 232 PVPCGSGRGPCHLANLLSTLAQSNQNRDHKQGPPEVTCQIRKKTR--TLYRSDQLEELEK 289
P P G ++ +ST + +Q+ D T RKK R T++ + QLEELEK
Sbjct: 125 PPPA---LGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEK 181
Query: 290 IFQEDHYPDSDKRREIAQTVGVTPQRIMVKGAGSLVAGWSGGGPTIETLELQSERSAVAW 349
F E HYPD R +A + RI
Sbjct: 182 AFSEAHYPDVYAREMLAVKTELPEDRIQ-------------------------------- 209
Query: 350 VWFQNRRAKWRKMEKLNGKES 370
VWFQNRRAKWRK EK G S
Sbjct: 210 VWFQNRRAKWRKREKRWGGSS 230
>gi|46249382 paired-like homeobox 2a [Homo sapiens]
Length = 284
Score = 64.3 bits (155), Expect = 2e-10
Identities = 56/203 (27%), Positives = 76/203 (37%), Gaps = 55/203 (27%)
Query: 272 RKKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMVKGAGSLVAGWSGG 331
+++ RT + S QL+ELE++F E HYPD R E+A + +T R+
Sbjct: 90 QRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ-------------- 135
Query: 332 GPTIETLELQSERSAVAWVWFQNRRAKWRKMEKLNGKESKDNPAAPGPASSQCSSAAEIL 391
VWFQNRRAK+RK E+ + A ++CSS +
Sbjct: 136 ------------------VWFQNRRAKFRKQERAASAKGAAGAAGAKKGEARCSSEDDDS 177
Query: 392 PAVPMEPKPDPFPQESPLDTFPEPPMLLTSDQTLAPTQPSEGAQRVVTPPLFSPPPVRRA 451
P PD + P PP + L+P SP PV
Sbjct: 178 KESTCSPTPD------STASLPPPPAPGLASPRLSP----------------SPLPVALG 215
Query: 452 DLPFPLGPVHTPQLMPLLMDVAG 474
P P GP P L VAG
Sbjct: 216 SGPGP-GPGPQPLKGALWAGVAG 237
>gi|34365783 visual system homeobox 2 [Homo sapiens]
Length = 361
Score = 63.5 bits (153), Expect = 4e-10
Identities = 44/140 (31%), Positives = 57/140 (40%), Gaps = 35/140 (25%)
Query: 234 PCGSGRGPCHLANLLSTLAQSNQNRDHKQGPPEVTCQIRKKTR---TLYRSDQLEELEKI 290
P G GP + S+ ++ + D K + ++K R T++ S QLEELEK
Sbjct: 107 PLGRASGPLDTSQTASSDSEDVSSSDRKMSKSALNQTKKRKKRRHRTIFTSYQLEELEKA 166
Query: 291 FQEDHYPDSDKRREIAQTVGVTPQRIMVKGAGSLVAGWSGGGPTIETLELQSERSAVAWV 350
F E HYPD R +A + RI V
Sbjct: 167 FNEAHYPDVYAREMLAMKTELPEDRIQ--------------------------------V 194
Query: 351 WFQNRRAKWRKMEKLNGKES 370
WFQNRRAKWRK EK G+ S
Sbjct: 195 WFQNRRAKWRKREKCWGRSS 214
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 62.4 bits (150), Expect = 9e-10
Identities = 59/234 (25%), Positives = 86/234 (36%), Gaps = 44/234 (18%)
Query: 253 QSNQNRDHKQGPPEVTCQIRKKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVT 312
QS++ D P + ++++RT + ++QLEELE+ F+ HYPD R E+AQ +T
Sbjct: 199 QSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLT 258
Query: 313 PQRIMVKGAGSLVAGWSGGGPTIETLELQSERSAVAWVWFQNRRAKWRKMEKLN------ 366
R+ VWF NRRA+WRK N
Sbjct: 259 EARVQ--------------------------------VWFSNRRARWRKQAGANQLMAFN 286
Query: 367 -----GKESKDNPAAPGPASSQCSSAAEILPAVPMEPKPDPF-PQESPLDTFPEPPMLLT 420
G P P S+ S +P +P PQ P T + +
Sbjct: 287 HLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSN 346
Query: 421 SDQTLAPTQPSEGAQRVVTPPLFSPPPVRRADLPFPLGPVHTPQLMPLLMDVAG 474
D + A PS F PP + +G +PQ+M LL + G
Sbjct: 347 PDSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGG 400
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 62.4 bits (150), Expect = 9e-10
Identities = 59/234 (25%), Positives = 86/234 (36%), Gaps = 44/234 (18%)
Query: 253 QSNQNRDHKQGPPEVTCQIRKKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVT 312
QS++ D P + ++++RT + ++QLEELE+ F+ HYPD R E+AQ +T
Sbjct: 200 QSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLT 259
Query: 313 PQRIMVKGAGSLVAGWSGGGPTIETLELQSERSAVAWVWFQNRRAKWRKMEKLN------ 366
R+ VWF NRRA+WRK N
Sbjct: 260 EARVQ--------------------------------VWFSNRRARWRKQAGANQLMAFN 287
Query: 367 -----GKESKDNPAAPGPASSQCSSAAEILPAVPMEPKPDPF-PQESPLDTFPEPPMLLT 420
G P P S+ S +P +P PQ P T + +
Sbjct: 288 HLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSN 347
Query: 421 SDQTLAPTQPSEGAQRVVTPPLFSPPPVRRADLPFPLGPVHTPQLMPLLMDVAG 474
D + A PS F PP + +G +PQ+M LL + G
Sbjct: 348 PDSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGG 401
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 62.4 bits (150), Expect = 9e-10
Identities = 59/234 (25%), Positives = 86/234 (36%), Gaps = 44/234 (18%)
Query: 253 QSNQNRDHKQGPPEVTCQIRKKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVT 312
QS++ D P + ++++RT + ++QLEELE+ F+ HYPD R E+AQ +T
Sbjct: 200 QSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLT 259
Query: 313 PQRIMVKGAGSLVAGWSGGGPTIETLELQSERSAVAWVWFQNRRAKWRKMEKLN------ 366
R+ VWF NRRA+WRK N
Sbjct: 260 EARVQ--------------------------------VWFSNRRARWRKQAGANQLMAFN 287
Query: 367 -----GKESKDNPAAPGPASSQCSSAAEILPAVPMEPKPDPF-PQESPLDTFPEPPMLLT 420
G P P S+ S +P +P PQ P T + +
Sbjct: 288 HLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSN 347
Query: 421 SDQTLAPTQPSEGAQRVVTPPLFSPPPVRRADLPFPLGPVHTPQLMPLLMDVAG 474
D + A PS F PP + +G +PQ+M LL + G
Sbjct: 348 PDSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGG 401
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 62.4 bits (150), Expect = 9e-10
Identities = 59/234 (25%), Positives = 86/234 (36%), Gaps = 44/234 (18%)
Query: 253 QSNQNRDHKQGPPEVTCQIRKKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVT 312
QS++ D P + ++++RT + ++QLEELE+ F+ HYPD R E+AQ +T
Sbjct: 200 QSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLT 259
Query: 313 PQRIMVKGAGSLVAGWSGGGPTIETLELQSERSAVAWVWFQNRRAKWRKMEKLN------ 366
R+ VWF NRRA+WRK N
Sbjct: 260 EARVQ--------------------------------VWFSNRRARWRKQAGANQLMAFN 287
Query: 367 -----GKESKDNPAAPGPASSQCSSAAEILPAVPMEPKPDPF-PQESPLDTFPEPPMLLT 420
G P P S+ S +P +P PQ P T + +
Sbjct: 288 HLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSN 347
Query: 421 SDQTLAPTQPSEGAQRVVTPPLFSPPPVRRADLPFPLGPVHTPQLMPLLMDVAG 474
D + A PS F PP + +G +PQ+M LL + G
Sbjct: 348 PDSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGG 401
>gi|113204604 aristaless-like homeobox 3 [Homo sapiens]
Length = 343
Score = 61.6 bits (148), Expect = 2e-09
Identities = 43/156 (27%), Positives = 63/156 (40%), Gaps = 39/156 (25%)
Query: 272 RKKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMVKGAGSLVAGWSGG 331
+++ RT + + QLEELEK+FQ+ HYPD R ++A +T R+
Sbjct: 153 KRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQ-------------- 198
Query: 332 GPTIETLELQSERSAVAWVWFQNRRAKWRKMEKLNGKESKDNPAAPGPASSQCSSAAEIL 391
VWFQNRRAKWRK E+ + NP + +L
Sbjct: 199 ------------------VWFQNRRAKWRKRERYGKIQEGRNPFT-------AAYDISVL 233
Query: 392 PAVPMEPKPDPFPQESPLDTFPEPPMLLTSDQTLAP 427
P P+ SP P P L++ + +P
Sbjct: 234 PRTDSHPQLQNSLWASPGSGSPGGPCLVSPEGIPSP 269
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 61.2 bits (147), Expect = 2e-09
Identities = 49/186 (26%), Positives = 74/186 (39%), Gaps = 37/186 (19%)
Query: 253 QSNQNRDHKQGPPEVTCQIRKKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVT 312
QS++ D P + ++++RT + ++QLEELE+ F+ HYPD R E+AQ +T
Sbjct: 200 QSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLT 259
Query: 313 PQRIMVKGAGSLVAGWSGGGPTIETLELQSERSAVAWVWFQNRRAKWRKMEKLNGKESKD 372
R+ VWF NRRA+WRK N +
Sbjct: 260 EARVQ--------------------------------VWFSNRRARWRKQAGAN-QLMAF 286
Query: 373 NPAAPG--PASSQCSSAAEILPAVPMEPKPDPFPQESPLDTF--PEPPMLLTSDQTLAPT 428
N PG P ++ + L +P P P T P+P T Q+ P+
Sbjct: 287 NHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPS 346
Query: 429 QPSEGA 434
P +
Sbjct: 347 NPDSSS 352
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 61.2 bits (147), Expect = 2e-09
Identities = 49/186 (26%), Positives = 74/186 (39%), Gaps = 37/186 (19%)
Query: 253 QSNQNRDHKQGPPEVTCQIRKKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVT 312
QS++ D P + ++++RT + ++QLEELE+ F+ HYPD R E+AQ +T
Sbjct: 200 QSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLT 259
Query: 313 PQRIMVKGAGSLVAGWSGGGPTIETLELQSERSAVAWVWFQNRRAKWRKMEKLNGKESKD 372
R+ VWF NRRA+WRK N +
Sbjct: 260 EARVQ--------------------------------VWFSNRRARWRKQAGAN-QLMAF 286
Query: 373 NPAAPG--PASSQCSSAAEILPAVPMEPKPDPFPQESPLDTF--PEPPMLLTSDQTLAPT 428
N PG P ++ + L +P P P T P+P T Q+ P+
Sbjct: 287 NHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPS 346
Query: 429 QPSEGA 434
P +
Sbjct: 347 NPDSSS 352
>gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens]
Length = 325
Score = 61.2 bits (147), Expect = 2e-09
Identities = 50/190 (26%), Positives = 74/190 (38%), Gaps = 45/190 (23%)
Query: 212 MGLAPTSSPGAPNSARATHNPVPCGS---GRGPCHLANLLSTLAQSNQNRDHKQGPP--- 265
+G+ + G P +PV + G + + ++LA S ++ D + GP
Sbjct: 31 LGVGGSDPGGHPGDLAPNSDPVEGATLLPGEDITTVGSTPASLAVSAKDPDKQPGPQGGP 90
Query: 266 -------EVTCQIRKKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMV 318
+ Q +K+ RT + QL ELE+ F + HYPD R E+A +G+T R+
Sbjct: 91 NPSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQ- 149
Query: 319 KGAGSLVAGWSGGGPTIETLELQSERSAVAWVWFQNRRAKWRKMEKLNGKESKDNPAAPG 378
VWFQNRRAKW+K +K P
Sbjct: 150 -------------------------------VWFQNRRAKWKKRKKTTNVFRAPGTLLPT 178
Query: 379 PASSQCSSAA 388
P Q SAA
Sbjct: 179 PGLPQFPSAA 188
>gi|14149760 orthopedia homeobox [Homo sapiens]
Length = 325
Score = 61.2 bits (147), Expect = 2e-09
Identities = 50/190 (26%), Positives = 74/190 (38%), Gaps = 45/190 (23%)
Query: 212 MGLAPTSSPGAPNSARATHNPVPCGS---GRGPCHLANLLSTLAQSNQNRDHKQGPP--- 265
+G+ + G P +PV + G + + ++LA S ++ D + GP
Sbjct: 31 LGVGGSDPGGHPGDLAPNSDPVEGATLLPGEDITTVGSTPASLAVSAKDPDKQPGPQGGP 90
Query: 266 -------EVTCQIRKKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMV 318
+ Q +K+ RT + QL ELE+ F + HYPD R E+A +G+T R+
Sbjct: 91 NPSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQ- 149
Query: 319 KGAGSLVAGWSGGGPTIETLELQSERSAVAWVWFQNRRAKWRKMEKLNGKESKDNPAAPG 378
VWFQNRRAKW+K +K P
Sbjct: 150 -------------------------------VWFQNRRAKWKKRKKTTNVFRAPGTLLPT 178
Query: 379 PASSQCSSAA 388
P Q SAA
Sbjct: 179 PGLPQFPSAA 188
>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
Length = 411
Score = 60.5 bits (145), Expect = 3e-09
Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 32/93 (34%)
Query: 272 RKKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMVKGAGSLVAGWSGG 331
+++ RT + S QLEELEK+FQ+ HYPD R ++A +T R+
Sbjct: 214 KRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ-------------- 259
Query: 332 GPTIETLELQSERSAVAWVWFQNRRAKWRKMEK 364
VWFQNRRAKWRK E+
Sbjct: 260 ------------------VWFQNRRAKWRKRER 274
>gi|14249388 retina and anterior neural fold homeobox 2 [Homo
sapiens]
Length = 184
Score = 60.1 bits (144), Expect = 4e-09
Identities = 49/175 (28%), Positives = 67/175 (38%), Gaps = 51/175 (29%)
Query: 273 KKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMVKGAGSLVAGWSGGG 332
++ RT + + QL +LE+ F+ HYPD R E+A V + R+ V
Sbjct: 28 RRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQV-------------- 73
Query: 333 PTIETLELQSERSAVAWVWFQNRRAKWRKMEKLNGKESKDNPAAPGPASSQCSSAAEILP 392
WFQNRRAKWR+ E+L S + AA LP
Sbjct: 74 ------------------WFQNRRAKWRRQERLE--------------SGSGAVAAPRLP 101
Query: 393 AVPMEPKPDPFPQESPLDTF--PEPPMLLTSDQTLAPTQPSEGAQRVVTPPLFSP 445
P P P PL+ + P PP + + L P G Q P F+P
Sbjct: 102 EAPALPFARPPAMSLPLEPWLGPGPPAVPGLPRLLG---PGPGLQASFGPHAFAP 153
>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 59.7 bits (143), Expect = 6e-09
Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 50/184 (27%)
Query: 249 STLAQSNQNRDHKQGPPEVTCQIRKK---TRTLYRSDQLEELEKIFQEDHYPDSDKRREI 305
++++ + ++ D Q + Q+++K RT + +Q+E LEK F+ HYPD R +
Sbjct: 188 NSISSNGEDSDEAQ----MRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERL 243
Query: 306 AQTVGVTPQRIMVKGAGSLVAGWSGGGPTIETLELQSERSAVAWVWFQNRRAKWRKMEKL 365
A + + RI V WF NRRAKWR+ EKL
Sbjct: 244 AAKIDLPEARIQV--------------------------------WFSNRRAKWRREEKL 271
Query: 366 -NGKESKDNPAAPGPASSQCSSAAEILPAVPMEPKPDPFPQESPLDTFPEPPMLLTSDQT 424
N + N + P SS S++ +P P P +P+ +F ML +D
Sbjct: 272 RNQRRQASNTPSHIPISSSFSTSV-------YQPIPQP---TTPVSSFTSGSMLGRTDTA 321
Query: 425 LAPT 428
L T
Sbjct: 322 LTNT 325
>gi|4580424 paired box gene 6 isoform b [Homo sapiens]
Length = 436
Score = 59.7 bits (143), Expect = 6e-09
Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 50/184 (27%)
Query: 249 STLAQSNQNRDHKQGPPEVTCQIRKK---TRTLYRSDQLEELEKIFQEDHYPDSDKRREI 305
++++ + ++ D Q + Q+++K RT + +Q+E LEK F+ HYPD R +
Sbjct: 202 NSISSNGEDSDEAQ----MRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERL 257
Query: 306 AQTVGVTPQRIMVKGAGSLVAGWSGGGPTIETLELQSERSAVAWVWFQNRRAKWRKMEKL 365
A + + RI V WF NRRAKWR+ EKL
Sbjct: 258 AAKIDLPEARIQV--------------------------------WFSNRRAKWRREEKL 285
Query: 366 -NGKESKDNPAAPGPASSQCSSAAEILPAVPMEPKPDPFPQESPLDTFPEPPMLLTSDQT 424
N + N + P SS S++ +P P P +P+ +F ML +D
Sbjct: 286 RNQRRQASNTPSHIPISSSFSTSV-------YQPIPQP---TTPVSSFTSGSMLGRTDTA 335
Query: 425 LAPT 428
L T
Sbjct: 336 LTNT 339
>gi|4505615 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 59.7 bits (143), Expect = 6e-09
Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 50/184 (27%)
Query: 249 STLAQSNQNRDHKQGPPEVTCQIRKK---TRTLYRSDQLEELEKIFQEDHYPDSDKRREI 305
++++ + ++ D Q + Q+++K RT + +Q+E LEK F+ HYPD R +
Sbjct: 188 NSISSNGEDSDEAQ----MRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERL 243
Query: 306 AQTVGVTPQRIMVKGAGSLVAGWSGGGPTIETLELQSERSAVAWVWFQNRRAKWRKMEKL 365
A + + RI V WF NRRAKWR+ EKL
Sbjct: 244 AAKIDLPEARIQV--------------------------------WFSNRRAKWRREEKL 271
Query: 366 -NGKESKDNPAAPGPASSQCSSAAEILPAVPMEPKPDPFPQESPLDTFPEPPMLLTSDQT 424
N + N + P SS S++ +P P P +P+ +F ML +D
Sbjct: 272 RNQRRQASNTPSHIPISSSFSTSV-------YQPIPQP---TTPVSSFTSGSMLGRTDTA 321
Query: 425 LAPT 428
L T
Sbjct: 322 LTNT 325
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 59.7 bits (143), Expect = 6e-09
Identities = 41/128 (32%), Positives = 53/128 (41%), Gaps = 42/128 (32%)
Query: 272 RKKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMVKGAGSLVAGWSGG 331
R++TRT + QLEELEK F E HYPD R +A + + R+
Sbjct: 105 RRRTRTNFTGWQLEELEKAFNESHYPDVFMREALALRLDLVESRVQ-------------- 150
Query: 332 GPTIETLELQSERSAVAWVWFQNRRAKWRKMEKLNGKESKDNPAAPGPASSQCSSAAEIL 391
VWFQNRRAKWRK E +K P P S + + E
Sbjct: 151 ------------------VWFQNRRAKWRKKE-----NTKKGPGRPAHNSHPTTCSGE-- 185
Query: 392 PAVPMEPK 399
PM+P+
Sbjct: 186 ---PMDPE 190
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 58.5 bits (140), Expect = 1e-08
Identities = 41/142 (28%), Positives = 59/142 (41%), Gaps = 42/142 (29%)
Query: 272 RKKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMVKGAGSLVAGWSGG 331
+++ RT + S QL+ELE++F E HYPD R E+A + +T R+
Sbjct: 98 QRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ-------------- 143
Query: 332 GPTIETLELQSERSAVAWVWFQNRRAKWRKMEKL---------NGKESKDNPAAPGPASS 382
VWFQNRRAK+RK E+ NG K + ++ S
Sbjct: 144 ------------------VWFQNRRAKFRKQERAAAAAAAAAKNGSSGKKSDSSRDDESK 185
Query: 383 QCSSAAEILPAVPMEPKPDPFP 404
+ S P P P+P P
Sbjct: 186 EAKSTDPDSTGGP-GPNPNPTP 206
>gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens]
Length = 326
Score = 58.2 bits (139), Expect = 2e-08
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 32/98 (32%)
Query: 267 VTCQIRKKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMVKGAGSLVA 326
V+ +++ RT + S QLEELEK+FQ+ HYPD R ++A +T R+
Sbjct: 127 VSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQ--------- 177
Query: 327 GWSGGGPTIETLELQSERSAVAWVWFQNRRAKWRKMEK 364
VWFQNRRAKWRK E+
Sbjct: 178 -----------------------VWFQNRRAKWRKRER 192
>gi|27777663 goosecoid [Homo sapiens]
Length = 257
Score = 58.2 bits (139), Expect = 2e-08
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 32/120 (26%)
Query: 266 EVTCQIRKKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMVKGAGSLV 325
++ C+ +++ RT++ +QLE LE +FQE YPD R ++A+ V + +++
Sbjct: 154 QLHCRRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVE-------- 205
Query: 326 AGWSGGGPTIETLELQSERSAVAWVWFQNRRAKWRKMEKLNGKESKDNPAAPGPASSQCS 385
VWF+NRRAKWR+ ++ + +ES++ +SS+ S
Sbjct: 206 ------------------------VWFKNRRAKWRRQKRSSSEESENAEKWNKTSSSKAS 241
>gi|21361183 paired-like homeodomain transcription factor 2 isoform
c [Homo sapiens]
Length = 324
Score = 57.8 bits (138), Expect = 2e-08
Identities = 53/207 (25%), Positives = 77/207 (37%), Gaps = 45/207 (21%)
Query: 209 PNAMGLAPTSSPGAPNSARATHNPVPCGSGRGPCHLANLLSTLAQSNQNRDHKQGPPEVT 268
P + +A +PG P S ++ + + + +Q +N D P
Sbjct: 30 PQPLAMASVLAPGQPRSLDSSKHRLEVHTISDTSSPEAAEKDKSQQGKNEDVGAEDPSKK 89
Query: 269 CQIRKKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMVKGAGSLVAGW 328
+ R++ RT + S QL+ELE FQ + YPD R EIA +T R+
Sbjct: 90 KRQRRQ-RTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVR----------- 137
Query: 329 SGGGPTIETLELQSERSAVAWVWFQNRRAKWRKMEKLNGKESKDNPAAPG---------- 378
VWF+NRRAKWRK E+ E N P
Sbjct: 138 ---------------------VWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDD 176
Query: 379 --PASSQCSSAAEILPAVPMEPKPDPF 403
P S + AA+ L + + K PF
Sbjct: 177 MYPGYSYNNWAAKGLTSASLSTKSFPF 203
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 57.8 bits (138), Expect = 2e-08
Identities = 43/160 (26%), Positives = 62/160 (38%), Gaps = 49/160 (30%)
Query: 272 RKKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMVKGAGSLVAGWSGG 331
++++RT + ++QLEELEK F+ HYPD R E+AQ +T R+
Sbjct: 217 QRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQ-------------- 262
Query: 332 GPTIETLELQSERSAVAWVWFQNRRAKWRKMEKLNGKESKDNPAAPGPASSQCSSAAEIL 391
VWF NRRA+WRK N Q ++ +L
Sbjct: 263 ------------------VWFSNRRARWRKQAGAN----------------QLAAFNHLL 288
Query: 392 P-AVPMEPKPDPFPQESPLDTFPEPPMLLTSDQTLAPTQP 430
P P P P + P T+P + T+ QP
Sbjct: 289 PGGFPPTGMPTLPPYQLPDSTYPTTTISQDGGSTVHRPQP 328
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 57.8 bits (138), Expect = 2e-08
Identities = 43/160 (26%), Positives = 62/160 (38%), Gaps = 49/160 (30%)
Query: 272 RKKTRTLYRSDQLEELEKIFQEDHYPDSDKRREIAQTVGVTPQRIMVKGAGSLVAGWSGG 331
++++RT + ++QLEELEK F+ HYPD R E+AQ +T R+
Sbjct: 215 QRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQ-------------- 260
Query: 332 GPTIETLELQSERSAVAWVWFQNRRAKWRKMEKLNGKESKDNPAAPGPASSQCSSAAEIL 391
VWF NRRA+WRK N Q ++ +L
Sbjct: 261 ------------------VWFSNRRARWRKQAGAN----------------QLAAFNHLL 286
Query: 392 P-AVPMEPKPDPFPQESPLDTFPEPPMLLTSDQTLAPTQP 430
P P P P + P T+P + T+ QP
Sbjct: 287 PGGFPPTGMPTLPPYQLPDSTYPTTTISQDGGSTVHRPQP 326
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.132 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,757,325
Number of Sequences: 37866
Number of extensions: 1565821
Number of successful extensions: 8875
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 540
Number of HSP's that attempted gapping in prelim test: 6751
Number of HSP's gapped (non-prelim): 2367
length of query: 490
length of database: 18,247,518
effective HSP length: 106
effective length of query: 384
effective length of database: 14,233,722
effective search space: 5465749248
effective search space used: 5465749248
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.