Search of human proteins with 29366838

Search of human proteins with 29366838

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|29366838 UBA domain containing 2 isoform 2 [Homo sapiens]
         (309 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|29366838 UBA domain containing 2 isoform 2 [Homo sapiens]          629   e-180
gi|221316645 UBA domain containing 2 isoform 1 [Homo sapiens]         430   e-121
gi|148727247 ubiquitin specific peptidase 5 isoform 2 [Homo sapi...    42   5e-04
gi|148727331 ubiquitin specific peptidase 5 isoform 1 [Homo sapi...    42   5e-04
gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens]       40   0.003
gi|215598688 ubiquitin thiolesterase 13 [Homo sapiens]                 39   0.004
gi|55770884 ubiquitin associated domain containing 1 [Homo sapiens]    35   0.084
gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens]      32   0.55 
gi|54607139 vacuolar protein sorting 13D isoform 1 [Homo sapiens]      32   0.55 
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ...    32   0.93 
gi|4506387 UV excision repair protein RAD23 homolog B [Homo sapi...    32   0.93 
gi|225703108 tudor domain containing 3 isoform 2 [Homo sapiens]        31   1.6  
gi|225703106 tudor domain containing 3 isoform 1 [Homo sapiens]        31   1.6  
gi|13540576 tudor domain containing 3 isoform 2 [Homo sapiens]         31   1.6  
gi|4826964 UV excision repair protein RAD23 homolog A [Homo sapi...    30   2.1  
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re...    30   2.7  
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re...    30   2.7  
gi|56237021 fibrillin 3 precursor [Homo sapiens]                       30   2.7  
gi|166795283 glucagon-like peptide 1 receptor [Homo sapiens]           30   3.5  
gi|122937341 hypothetical protein LOC388960 [Homo sapiens]             30   3.5  
gi|16118229 keratin associated protein 9-4 [Homo sapiens]              30   3.5  
gi|221139761 zinc finger protein 853 [Homo sapiens]                    29   4.6  
gi|15208660 tripartite motif protein 21 [Homo sapiens]                 29   4.6  
gi|217416332 trinucleotide repeat containing 6C isoform 1 [Homo ...    29   4.6  
gi|33413425 trinucleotide repeat containing 6C isoform 2 [Homo s...    29   4.6  
gi|4557293 autoimmune regulator isoform 2 [Homo sapiens]               29   6.0  
gi|55741571 leucine rich repeat and fibronectin type III domain ...    28   7.9  
gi|110347429 mediator complex subunit 12 [Homo sapiens]                28   7.9  
gi|16118240 keratin associated protein 9.2 [Homo sapiens]              28   7.9  
gi|31542779 tripartite motif family-like 1 [Homo sapiens]              28   7.9  

>gi|29366838 UBA domain containing 2 isoform 2 [Homo sapiens]
          Length = 309

 Score =  629 bits (1622), Expect = e-180
 Identities = 309/309 (100%), Positives = 309/309 (100%)

Query: 1   MCFFFSLQEEFLDKHTLMRVLSSGGKLGSRGEGAQLCCWMLLFSWRVSGGQQTRRLCRRA 60
           MCFFFSLQEEFLDKHTLMRVLSSGGKLGSRGEGAQLCCWMLLFSWRVSGGQQTRRLCRRA
Sbjct: 1   MCFFFSLQEEFLDKHTLMRVLSSGGKLGSRGEGAQLCCWMLLFSWRVSGGQQTRRLCRRA 60

Query: 61  FCWSPVPSPSCSPSSCLTARSSLCMTFTQSRTTSSLAPVFALFVPFYCSIPRVQVAQILG 120
           FCWSPVPSPSCSPSSCLTARSSLCMTFTQSRTTSSLAPVFALFVPFYCSIPRVQVAQILG
Sbjct: 61  FCWSPVPSPSCSPSSCLTARSSLCMTFTQSRTTSSLAPVFALFVPFYCSIPRVQVAQILG 120

Query: 121 PLSITNKTLIYILGLQLFTSGSYIWIVAISGLMSGLCYDSKMFQVHQVLCIPSWMAKFFS 180
           PLSITNKTLIYILGLQLFTSGSYIWIVAISGLMSGLCYDSKMFQVHQVLCIPSWMAKFFS
Sbjct: 121 PLSITNKTLIYILGLQLFTSGSYIWIVAISGLMSGLCYDSKMFQVHQVLCIPSWMAKFFS 180

Query: 181 WTLEPIFSSSEPTSEARIGMGATLDIQRQQRMELLDRQLMFSQFAQGRRQRQQQGGMINW 240
           WTLEPIFSSSEPTSEARIGMGATLDIQRQQRMELLDRQLMFSQFAQGRRQRQQQGGMINW
Sbjct: 181 WTLEPIFSSSEPTSEARIGMGATLDIQRQQRMELLDRQLMFSQFAQGRRQRQQQGGMINW 240

Query: 241 NRLFPPLRQRQNVNYQGGRQSEPAAPPLEVSEEQVARLMEMGFSRGDALEALRASNNDLN 300
           NRLFPPLRQRQNVNYQGGRQSEPAAPPLEVSEEQVARLMEMGFSRGDALEALRASNNDLN
Sbjct: 241 NRLFPPLRQRQNVNYQGGRQSEPAAPPLEVSEEQVARLMEMGFSRGDALEALRASNNDLN 300

Query: 301 VATNFLLQH 309
           VATNFLLQH
Sbjct: 301 VATNFLLQH 309


>gi|221316645 UBA domain containing 2 isoform 1 [Homo sapiens]
          Length = 344

 Score =  430 bits (1106), Expect = e-121
 Identities = 215/225 (95%), Positives = 218/225 (96%)

Query: 85  MTFTQSRTTSSLAPVFALFVPFYCSIPRVQVAQILGPLSITNKTLIYILGLQLFTSGSYI 144
           +T   +  +  LAPVFALFVPFYCSIPRVQVAQILGPLSITNKTLIYILGLQLFTSGSYI
Sbjct: 120 ITAASNLPSGFLAPVFALFVPFYCSIPRVQVAQILGPLSITNKTLIYILGLQLFTSGSYI 179

Query: 145 WIVAISGLMSGLCYDSKMFQVHQVLCIPSWMAKFFSWTLEPIFSSSEPTSEARIGMGATL 204
           WIVAISGLMSGLCYDSKMFQVHQVLCIPSWMAKFFSWTLEPIFSSSEPTSEARIGMGATL
Sbjct: 180 WIVAISGLMSGLCYDSKMFQVHQVLCIPSWMAKFFSWTLEPIFSSSEPTSEARIGMGATL 239

Query: 205 DIQRQQRMELLDRQLMFSQFAQGRRQRQQQGGMINWNRLFPPLRQRQNVNYQGGRQSEPA 264
           DIQRQQRMELLDRQLMFSQFAQGRRQRQQQGGMINWNRLFPPLRQRQNVNYQGGRQSEPA
Sbjct: 240 DIQRQQRMELLDRQLMFSQFAQGRRQRQQQGGMINWNRLFPPLRQRQNVNYQGGRQSEPA 299

Query: 265 APPLEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQH 309
           APPLEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQH
Sbjct: 300 APPLEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQH 344


>gi|148727247 ubiquitin specific peptidase 5 isoform 2 [Homo
           sapiens]
          Length = 835

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 258 GRQSEPAAPPLEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQH 309
           G  S  A PP    E+ V  ++ MGFSR  AL+ALRA+NN L  A +++  H
Sbjct: 691 GSTSAAADPP---PEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSH 739


>gi|148727331 ubiquitin specific peptidase 5 isoform 1 [Homo
           sapiens]
          Length = 858

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 258 GRQSEPAAPPLEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQH 309
           G  S  A PP    E+ V  ++ MGFSR  AL+ALRA+NN L  A +++  H
Sbjct: 714 GSTSAAADPP---PEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSH 762


>gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens]
          Length = 4374

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 6/54 (11%)

Query: 256  QGGRQSEPAAPPLEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQH 309
            +GG + EP     +V+++Q+ +LM+MGF+R  A+EAL  + + +  AT +LL H
Sbjct: 1308 EGGSRREP-----QVNQQQLQQLMDMGFTREHAMEAL-LNTSTMEQATEYLLTH 1355


>gi|215598688 ubiquitin thiolesterase 13 [Homo sapiens]
          Length = 863

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 272 EEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQH 309
           EE VA +  MGF R  A++ALRA+NN+L  A +++  H
Sbjct: 730 EEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSH 767


>gi|55770884 ubiquitin associated domain containing 1 [Homo sapiens]
          Length = 405

 Score = 35.0 bits (79), Expect = 0.084
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 275 VARLMEMGFSRGDALEALRASNNDLNVATNFLL 307
           V  LMEMGF   + ++ALR +NN  N A  +LL
Sbjct: 294 VISLMEMGFDEKEVIDALRVNNNQQNAACEWLL 326


>gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens]
          Length = 4363

 Score = 32.3 bits (72), Expect = 0.55
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 270  VSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQH 309
            V E Q+ARL E+GFS  D  +AL A    L  A ++L ++
Sbjct: 2637 VLELQLARLQELGFSMDDCRKALLACQGQLKKAASWLFKN 2676


>gi|54607139 vacuolar protein sorting 13D isoform 1 [Homo sapiens]
          Length = 4388

 Score = 32.3 bits (72), Expect = 0.55
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 270  VSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQH 309
            V E Q+ARL E+GFS  D  +AL A    L  A ++L ++
Sbjct: 2637 VLELQLARLQELGFSMDDCRKALLACQGQLKKAASWLFKN 2676


>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
            sapiens]
          Length = 5537

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 207  QRQQRMELLDRQLMFSQFAQGRRQRQQQGGMINWNR--LFPPLRQRQNVNYQGGRQSEP 263
            Q QQ+ + L +Q    Q    ++Q+QQQ G++N +R  L P  +Q+Q V    G  ++P
Sbjct: 3947 QLQQQQQQLQQQQQQQQQQFQQQQQQQQMGLLNQSRTLLSPQQQQQQQVALGPGMPAKP 4005


>gi|4506387 UV excision repair protein RAD23 homolog B [Homo
           sapiens]
          Length = 409

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 272 EEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQ 308
           +E + RL  +GF  G  ++A  A   + N+A NFLLQ
Sbjct: 367 KEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQ 403



 Score = 31.2 bits (69), Expect = 1.2
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 272 EEQVARLMEMGFSRGDALEALRASNNDLNVATNFLL 307
           E  V  +M MG+ R   + ALRAS N+ + A  +LL
Sbjct: 191 ENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLL 226


>gi|225703108 tudor domain containing 3 isoform 2 [Homo sapiens]
          Length = 651

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 270 VSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLL 307
           V E+ +  + EMGFS+  + +AL  + N+L  A N LL
Sbjct: 194 VDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLL 231


>gi|225703106 tudor domain containing 3 isoform 1 [Homo sapiens]
          Length = 744

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 270 VSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLL 307
           V E+ +  + EMGFS+  + +AL  + N+L  A N LL
Sbjct: 287 VDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLL 324


>gi|13540576 tudor domain containing 3 isoform 2 [Homo sapiens]
          Length = 651

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 270 VSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLL 307
           V E+ +  + EMGFS+  + +AL  + N+L  A N LL
Sbjct: 194 VDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLL 231


>gi|4826964 UV excision repair protein RAD23 homolog A [Homo
           sapiens]
          Length = 363

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 258 GRQSEPAAPPLEVSEEQ--VARLMEMGFSRGDALEALRASNNDLNVATNFLL 307
           GR+ + A+  +  SE +  +  +M MG+ R   + ALRAS N+ + A  +LL
Sbjct: 148 GREEDAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLL 199


>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a2 isoform a [Homo sapiens]
          Length = 1590

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 9/68 (13%)

Query: 207 QRQQRMELLDRQLMFSQFAQGRRQRQQQGGMINWNR--------LFPPLRQRQNVNYQGG 258
           Q+QQ+ +   +Q    Q  Q + Q+QQQ  ++N+NR          P   Q+  V   GG
Sbjct: 226 QQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGG 285

Query: 259 RQSEPAAP 266
           R S PA P
Sbjct: 286 RPS-PAPP 292


>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a2 isoform b [Homo sapiens]
          Length = 1572

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 9/68 (13%)

Query: 207 QRQQRMELLDRQLMFSQFAQGRRQRQQQGGMINWNR--------LFPPLRQRQNVNYQGG 258
           Q+QQ+ +   +Q    Q  Q + Q+QQQ  ++N+NR          P   Q+  V   GG
Sbjct: 226 QQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGG 285

Query: 259 RQSEPAAP 266
           R S PA P
Sbjct: 286 RPS-PAPP 292


>gi|56237021 fibrillin 3 precursor [Homo sapiens]
          Length = 2809

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 38  CWMLLFSWRVSG---GQQTRR--LCRRAFCWSPVPSPSCSPSSCLTARSSLC 84
           C+ +LF  R +G   G  TRR   C R  CW+  P P   P         LC
Sbjct: 295 CFSVLFGGRCAGDLAGHYTRRQCCCDRGRCWAAGPVPELCPPRGSNEFQQLC 346


>gi|166795283 glucagon-like peptide 1 receptor [Homo sapiens]
          Length = 463

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 20 VLSSGGKLGSRGEGAQLCCWMLLFSWRVSGGQQTRRLCRRAFCWSPVPS 68
          +L   G+ G R +GA +  W  +  WR     + RR C+R+    P P+
Sbjct: 14 LLGMVGRAGPRPQGATVSLWETVQKWR-----EYRRQCQRSLTEDPPPA 57


>gi|122937341 hypothetical protein LOC388960 [Homo sapiens]
          Length = 922

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 42/166 (25%), Positives = 66/166 (39%), Gaps = 16/166 (9%)

Query: 78  TARSSLCMTFTQSRT--TSSLAPVF-----ALFVPFYCSIPRVQVAQILGPLSITNKTLI 130
           TA SS+ MT    +T  T+++ P++     +L       IP  Q   +  P  I ++   
Sbjct: 154 TAVSSMSMTAQYYKTSDTNTMVPLYPSLSASLVQGTLTQIPNQQGHNLSLPCQIGSQVYY 213

Query: 131 YILG--------LQLFTSGSYIWIVAISGLMSGLCYDSKMFQVHQVLCIPSWMAKFFSWT 182
           Y  G        LQ + S SY    A S     +    K  Q   VL   S    ++S +
Sbjct: 214 YNQGTLGPQLSCLQSYGSVSYTGYRA-SAHQPEMVMVLKEVQPTNVLPPVSTSGMYYSVS 272

Query: 183 LEPIFSSSEPTSEARIGMGATLDIQRQQRMELLDRQLMFSQFAQGR 228
            +PI  +S    E  +GM  +L +Q   +   L +   FS+    R
Sbjct: 273 SQPITETSVQVMETSLGMDTSLGLQSPSQTFCLPQTPEFSKSFSSR 318


>gi|16118229 keratin associated protein 9-4 [Homo sapiens]
          Length = 154

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 7/68 (10%)

Query: 54  RRLCRRAFCWSPVP------SPSCSPSSCLTARSSLCMTFTQSRTTSSLAP-VFALFVPF 106
           R  C R  CW P        +P C PS C+++    C   T  + T      V +   P 
Sbjct: 15  RTTCCRTTCWKPTTVTTCSSTPCCQPSCCVSSCCQPCCRPTCCQNTCCQPTCVTSCCQPS 74

Query: 107 YCSIPRVQ 114
            CS P  Q
Sbjct: 75  CCSTPCCQ 82


>gi|221139761 zinc finger protein 853 [Homo sapiens]
          Length = 659

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 15/82 (18%)

Query: 209 QQRMELLDRQLMFSQFAQGRRQRQQQGGMINWNRLFPPLRQRQNVNYQGGRQSEPAAPPL 268
           +Q+   L +QL+  Q  Q ++Q+QQQ            L Q+Q    Q   Q +   PPL
Sbjct: 268 EQQQAQLQQQLLLQQQEQLQQQQQQQ------------LLQQQQEQLQ---QQQLQPPPL 312

Query: 269 EVSEEQVARLMEMGFSRGDALE 290
           E  EE+   L  M    G   E
Sbjct: 313 EPEEEEEVELELMPVDLGSEQE 334


>gi|15208660 tripartite motif protein 21 [Homo sapiens]
          Length = 475

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 132 ILGLQLFTSGSYIWIVAISGLMS---GLCYDSKMFQVHQVLCIPSWMAKFFSWTLEPIFS 188
           +LG Q F SG + W V ++G  +   G+C DS   + H +L   S     + W  +   +
Sbjct: 331 VLGAQHFHSGKHYWEVDVTGKEAWDLGVCRDSVRRKGHFLLSSKSGFWTIWLWNKQKYEA 390

Query: 189 SSEP 192
            + P
Sbjct: 391 GTYP 394


>gi|217416332 trinucleotide repeat containing 6C isoform 1 [Homo
           sapiens]
          Length = 1726

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 14/34 (41%), Positives = 24/34 (70%)

Query: 275 VARLMEMGFSRGDALEALRASNNDLNVATNFLLQ 308
           + +L +MGF R  A EAL+++N +L+ A + LL+
Sbjct: 941 IKQLTDMGFPREPAEEALKSNNMNLDQAMSALLE 974


>gi|33413425 trinucleotide repeat containing 6C isoform 2 [Homo
           sapiens]
          Length = 1690

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 14/34 (41%), Positives = 24/34 (70%)

Query: 275 VARLMEMGFSRGDALEALRASNNDLNVATNFLLQ 308
           + +L +MGF R  A EAL+++N +L+ A + LL+
Sbjct: 944 IKQLTDMGFPREPAEEALKSNNMNLDQAMSALLE 977


>gi|4557293 autoimmune regulator isoform 2 [Homo sapiens]
          Length = 348

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 14/61 (22%)

Query: 21 LSSGGKLGSRGEGAQLCCWMLLFSWRVSGGQQTRRLCRRAFCWSPVPSPSCSPSSCLTAR 80
          + +G +LGS   G Q CCW   F   V+     RR+          PSP C   SCL  +
Sbjct: 52 MGAGQRLGS--SGTQRCCWGSCFGKEVA----LRRVLH--------PSPVCMGVSCLCQK 97

Query: 81 S 81
          +
Sbjct: 98 N 98


>gi|55741571 leucine rich repeat and fibronectin type III domain
           containing 2 [Homo sapiens]
          Length = 789

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 181 WTLEPIFSSSEPTSEARIGMGATLDIQRQQRMELLD 216
           W + P     +P+ +  +G  A+LD++ Q++ ELLD
Sbjct: 640 WRIPPSAPRPKPSLDRLMGAFASLDLKSQRKEELLD 675


>gi|110347429 mediator complex subunit 12 [Homo sapiens]
          Length = 2177

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 13/69 (18%)

Query: 206  IQRQQRMELLDRQLMFSQFAQGRRQRQQQGGMINWNRLFPPLRQRQNVNYQGGRQSEPAA 265
            I++QQ+ ++L +Q    Q  Q ++Q+QQQ             +Q+Q       +Q + AA
Sbjct: 2079 IRQQQQQQILRQQQQQQQQQQQQQQQQQQ-------------QQQQQQQQHQQQQQQQAA 2125

Query: 266  PPLEVSEEQ 274
            PP    + Q
Sbjct: 2126 PPQPQPQSQ 2134


>gi|16118240 keratin associated protein 9.2 [Homo sapiens]
          Length = 174

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 12/73 (16%)

Query: 54  RRLCRRAFCWSPVP------SPSCSPSSCLTA------RSSLCMTFTQSRTTSSLAPVFA 101
           R  C R  CW P        +P C P+ C+++      R + C       T      V +
Sbjct: 15  RTTCCRTTCWKPTTVTTCSSTPCCQPACCVSSCCQPCCRPTCCQNTCCRTTCCQPTCVTS 74

Query: 102 LFVPFYCSIPRVQ 114
              P  CS P  Q
Sbjct: 75  CCQPSCCSTPCCQ 87


>gi|31542779 tripartite motif family-like 1 [Homo sapiens]
          Length = 468

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)

Query: 132 ILGLQLFTSGSYIWIVAISGLMS---GLCYDS 160
           +LG Q+FTSG + W V +        G+C DS
Sbjct: 330 VLGTQIFTSGRHYWEVEVGNKTEWEVGICKDS 361


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.135    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,954,308
Number of Sequences: 37866
Number of extensions: 546425
Number of successful extensions: 2643
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2570
Number of HSP's gapped (non-prelim): 74
length of query: 309
length of database: 18,247,518
effective HSP length: 102
effective length of query: 207
effective length of database: 14,385,186
effective search space: 2977733502
effective search space used: 2977733502
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.