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Search of human proteins with 28872738
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28872738 mitochondrial ribosomal protein L43 isoform d [Homo
sapiens]
(235 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28872738 mitochondrial ribosomal protein L43 isoform d [Homo ... 485 e-137
gi|28872732 mitochondrial ribosomal protein L43 isoform b [Homo ... 317 6e-87
gi|28872736 mitochondrial ribosomal protein L43 isoform c [Homo ... 317 6e-87
gi|28872734 mitochondrial ribosomal protein L43 isoform a [Homo ... 315 2e-86
gi|4505355 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2... 32 0.36
gi|139394646 iroquois homeobox protein 5 [Homo sapiens] 32 0.47
gi|156564386 deltex 2 isoform b [Homo sapiens] 30 1.4
gi|156564384 deltex 2 isoform a [Homo sapiens] 30 1.4
gi|156564382 deltex 2 isoform a [Homo sapiens] 30 1.4
gi|156564380 deltex 2 isoform a [Homo sapiens] 30 1.4
gi|126090909 engrailed homeobox 1 [Homo sapiens] 30 2.3
gi|4502115 acyloxyacyl hydrolase precursor [Homo sapiens] 29 3.1
gi|115298645 mitogen-activated protein kinase kinase kinase 14 [... 29 4.0
gi|239753539 PREDICTED: hypothetical protein [Homo sapiens] 29 4.0
gi|239748123 PREDICTED: hypothetical protein XP_002346557 [Homo ... 29 4.0
gi|239742022 PREDICTED: hypothetical protein XP_002342393 [Homo ... 29 4.0
gi|239757343 PREDICTED: hypothetical protein XP_002345253 [Homo ... 28 5.2
gi|194578888 calmegin [Homo sapiens] 28 5.2
gi|4758004 calmegin [Homo sapiens] 28 5.2
gi|66933005 calnexin precursor [Homo sapiens] 28 6.8
gi|10716563 calnexin precursor [Homo sapiens] 28 6.8
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 28 6.8
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 28 6.8
gi|189242612 complement component 6 precursor [Homo sapiens] 28 8.9
gi|169636415 complement component 6 precursor [Homo sapiens] 28 8.9
>gi|28872738 mitochondrial ribosomal protein L43 isoform d [Homo
sapiens]
Length = 235
Score = 485 bits (1249), Expect = e-137
Identities = 235/235 (100%), Positives = 235/235 (100%)
Query: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG
Sbjct: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
Query: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH
Sbjct: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
Query: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQDAAEFLGEGAGPCWYSIVALPQKHI 180
TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQDAAEFLGEGAGPCWYSIVALPQKHI
Sbjct: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQDAAEFLGEGAGPCWYSIVALPQKHI 180
Query: 181 AIAIHPPQPAGQCHQAIGHWPETVCSCTADPPARLARPNISSVIRSSLGKYPLPS 235
AIAIHPPQPAGQCHQAIGHWPETVCSCTADPPARLARPNISSVIRSSLGKYPLPS
Sbjct: 181 AIAIHPPQPAGQCHQAIGHWPETVCSCTADPPARLARPNISSVIRSSLGKYPLPS 235
>gi|28872732 mitochondrial ribosomal protein L43 isoform b [Homo
sapiens]
Length = 215
Score = 317 bits (812), Expect = 6e-87
Identities = 156/156 (100%), Positives = 156/156 (100%)
Query: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG
Sbjct: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
Query: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH
Sbjct: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
Query: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQD 156
TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQD
Sbjct: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQD 156
>gi|28872736 mitochondrial ribosomal protein L43 isoform c [Homo
sapiens]
Length = 202
Score = 317 bits (812), Expect = 6e-87
Identities = 156/156 (100%), Positives = 156/156 (100%)
Query: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG
Sbjct: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
Query: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH
Sbjct: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
Query: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQD 156
TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQD
Sbjct: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQD 156
>gi|28872734 mitochondrial ribosomal protein L43 isoform a [Homo
sapiens]
Length = 159
Score = 315 bits (808), Expect = 2e-86
Identities = 156/159 (98%), Positives = 157/159 (98%)
Query: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG
Sbjct: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
Query: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH
Sbjct: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
Query: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQDAAE 159
TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQ A+
Sbjct: 121 TDNPSIQGQWHPFTNKPTTFRGLRPREVQDPAPAQVQAQ 159
>gi|4505355 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2,
8kDa [Homo sapiens]
Length = 99
Score = 32.3 bits (72), Expect = 0.36
Identities = 14/79 (17%), Positives = 38/79 (48%)
Query: 26 LQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYLNGAVR 85
L+ + + + S+G R+F+E+ ++ + NP + I + P++ A Y G
Sbjct: 16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQET 75
Query: 86 EESIHCKSVEEISTLVQKL 104
++ S ++++ ++ +
Sbjct: 76 NVPLNNFSADQVTRALENV 94
>gi|139394646 iroquois homeobox protein 5 [Homo sapiens]
Length = 483
Score = 32.0 bits (71), Expect = 0.47
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 145 PREVQDPAPAQDAAEFLGEGAGPCWYSIVALPQKHIAIAIHPPQPAGQCHQAIGHWPETV 204
P P+PA AA L E P + + P H A PP P G ++ H P
Sbjct: 267 PPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGG---PSVIHSPP-- 321
Query: 205 CSCTADPPARLARPNISSV 223
PPA LA+P + S+
Sbjct: 322 ---PPPPPAVLAKPKLWSL 337
>gi|156564386 deltex 2 isoform b [Homo sapiens]
Length = 575
Score = 30.4 bits (67), Expect = 1.4
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 75 VVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRK--PFHTDNPSI------ 126
++A Y NG ++ S+ C S + I Q ++V+R + P H D +I
Sbjct: 407 LLAMYCNGN-KDGSLQCPSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDCGTILIVYSI 465
Query: 127 ----QGQWHPFTNKPTTFRGLRPREVQDPAPAQ 155
QG HP KP T RG PR+ P AQ
Sbjct: 466 PHGIQGPEHPNPGKPFTARGF-PRQCYLPDNAQ 497
>gi|156564384 deltex 2 isoform a [Homo sapiens]
Length = 622
Score = 30.4 bits (67), Expect = 1.4
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 75 VVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRK--PFHTDNPSI------ 126
++A Y NG ++ S+ C S + I Q ++V+R + P H D +I
Sbjct: 454 LLAMYCNGN-KDGSLQCPSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDCGTILIVYSI 512
Query: 127 ----QGQWHPFTNKPTTFRGLRPREVQDPAPAQ 155
QG HP KP T RG PR+ P AQ
Sbjct: 513 PHGIQGPEHPNPGKPFTARGF-PRQCYLPDNAQ 544
>gi|156564382 deltex 2 isoform a [Homo sapiens]
Length = 622
Score = 30.4 bits (67), Expect = 1.4
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 75 VVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRK--PFHTDNPSI------ 126
++A Y NG ++ S+ C S + I Q ++V+R + P H D +I
Sbjct: 454 LLAMYCNGN-KDGSLQCPSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDCGTILIVYSI 512
Query: 127 ----QGQWHPFTNKPTTFRGLRPREVQDPAPAQ 155
QG HP KP T RG PR+ P AQ
Sbjct: 513 PHGIQGPEHPNPGKPFTARGF-PRQCYLPDNAQ 544
>gi|156564380 deltex 2 isoform a [Homo sapiens]
Length = 622
Score = 30.4 bits (67), Expect = 1.4
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 75 VVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRK--PFHTDNPSI------ 126
++A Y NG ++ S+ C S + I Q ++V+R + P H D +I
Sbjct: 454 LLAMYCNGN-KDGSLQCPSCKTIYGEKTGTQPQGKMEVLRFQMSLPGHEDCGTILIVYSI 512
Query: 127 ----QGQWHPFTNKPTTFRGLRPREVQDPAPAQ 155
QG HP KP T RG PR+ P AQ
Sbjct: 513 PHGIQGPEHPNPGKPFTARGF-PRQCYLPDNAQ 544
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 29.6 bits (65), Expect = 2.3
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 176 PQKHIAIAIHPPQPAGQCHQAIGHW------PETVCSCTADPPARL 215
P +H+A H PQPA Q H+ + P+ C PP L
Sbjct: 82 PPQHLAAPAHQPQPAAQLHRTTNFFIDNILRPDFGCKKEQPPPQLL 127
>gi|4502115 acyloxyacyl hydrolase precursor [Homo sapiens]
Length = 575
Score = 29.3 bits (64), Expect = 3.1
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 8/37 (21%)
Query: 32 SVSRDGASSRGAREFVE----REVIDFARRNPGVVIY 64
++SR+GASSR ++F+E +V+D+ P +VIY
Sbjct: 336 NISRNGASSRNLKKFIESLSRNKVLDY----PAIVIY 368
>gi|115298645 mitogen-activated protein kinase kinase kinase 14
[Homo sapiens]
Length = 947
Score = 28.9 bits (63), Expect = 4.0
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 69 PCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFHTDNPSIQG 128
P C P + A+ + +R+E IH S E+ V + Q G ++ P+ + +
Sbjct: 620 PSCAP-LTAQAIQEGLRKEPIHRVSAAELGGKVNRALQQVG----GLKSPWRGEYKEPR- 673
Query: 129 QWHPFTNKPTTFRGL--RPREVQDPAPAQDAAE 159
HP N+ + L +PRE+ AP AE
Sbjct: 674 --HPPPNQANYHQTLHAQPRELSPRAPGPRPAE 704
>gi|239753539 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 28.9 bits (63), Expect = 4.0
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 150 DPAPAQDAAEFLGEGAGPCWYSIVALPQKHIAIAIHPPQPAGQCHQAIG 198
+ P + + G GPC + A P A+HP +P G C Q G
Sbjct: 24 EKCPRESLSRVSSAGRGPCTRTGTA-PGPAFPQALHPQRPGGICEQPSG 71
>gi|239748123 PREDICTED: hypothetical protein XP_002346557 [Homo
sapiens]
Length = 159
Score = 28.9 bits (63), Expect = 4.0
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 150 DPAPAQDAAEFLGEGAGPCWYSIVALPQKHIAIAIHPPQPAGQCHQAIG 198
+ P + + G GPC + A P A+HP +P G C Q G
Sbjct: 24 EKCPRESLSRVSSAGRGPCTRTGTA-PGPAFPQALHPQRPGGICEQPSG 71
>gi|239742022 PREDICTED: hypothetical protein XP_002342393 [Homo
sapiens]
Length = 159
Score = 28.9 bits (63), Expect = 4.0
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 150 DPAPAQDAAEFLGEGAGPCWYSIVALPQKHIAIAIHPPQPAGQCHQAIG 198
+ P + + G GPC + A P A+HP +P G C Q G
Sbjct: 24 EKCPRESLSRVSSAGRGPCTRTGTA-PGPAFPQALHPQRPGGICEQPSG 71
>gi|239757343 PREDICTED: hypothetical protein XP_002345253 [Homo
sapiens]
Length = 521
Score = 28.5 bits (62), Expect = 5.2
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 161 LGEGAGPCWYSIVALPQKHIAIAIHPPQPAGQCHQAIGHWPETVCSCTADPPARLARPNI 220
LG G +S ALP H P+P+G HQ G P CS T R P+
Sbjct: 187 LGGRGGALQFSDQALPSSHRGTPSTSPKPSG--HQPAG--PTGTCSGTHSARLRPGGPHT 242
Query: 221 SSVIRSSLG 229
++ S G
Sbjct: 243 RGMLGSLRG 251
>gi|194578888 calmegin [Homo sapiens]
Length = 610
Score = 28.5 bits (62), Expect = 5.2
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 117 KPFHTDNPSIQGQWHPFTNKPTTFRGL-RPREVQDPAPAQDAAEFL 161
KP DNP +G W P ++G+ PR++ +P +D FL
Sbjct: 359 KPPMIDNPKYKGVWRPPLVDNPNYQGIWSPRKIPNPDYFEDDHPFL 404
>gi|4758004 calmegin [Homo sapiens]
Length = 610
Score = 28.5 bits (62), Expect = 5.2
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 117 KPFHTDNPSIQGQWHPFTNKPTTFRGL-RPREVQDPAPAQDAAEFL 161
KP DNP +G W P ++G+ PR++ +P +D FL
Sbjct: 359 KPPMIDNPKYKGVWRPPLVDNPNYQGIWSPRKIPNPDYFEDDHPFL 404
>gi|66933005 calnexin precursor [Homo sapiens]
Length = 592
Score = 28.1 bits (61), Expect = 6.8
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 122 DNPSIQGQWHPFTNKPTTFRGL-RPREVQDPAPAQDAAEF 160
DNP+ +G+W P +++G+ +PR++ +P +D F
Sbjct: 375 DNPNYKGKWKPPMIDNPSYQGIWKPRKIPNPDFFEDLEPF 414
>gi|10716563 calnexin precursor [Homo sapiens]
Length = 592
Score = 28.1 bits (61), Expect = 6.8
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 122 DNPSIQGQWHPFTNKPTTFRGL-RPREVQDPAPAQDAAEF 160
DNP+ +G+W P +++G+ +PR++ +P +D F
Sbjct: 375 DNPNYKGKWKPPMIDNPSYQGIWKPRKIPNPDFFEDLEPF 414
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 28.1 bits (61), Expect = 6.8
Identities = 34/112 (30%), Positives = 43/112 (38%), Gaps = 11/112 (9%)
Query: 132 PFTNKPTTFRGLRPREVQDPAPAQDAAEFLGEGAGP----CWYSIVALPQKHIAIAIHPP 187
P + P + P QDPAPA A+ G G GP S PQ A + P
Sbjct: 714 PHLSVPASVIVSAPPPAQDPAPATPVAK--GAGLGPQAPDSQASPAPAPQIPAAAPLKGP 771
Query: 188 QPAGQ---CHQA-IGHWPETVCSCTADPPAR-LARPNISSVIRSSLGKYPLP 234
P+ HQA +G P PP+R +RP S S +P P
Sbjct: 772 GPSSSPSLPHQAPLGDSPHLPSPHPTRPPSRPPSRPQSVSRPPSEPPLHPCP 823
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 28.1 bits (61), Expect = 6.8
Identities = 31/105 (29%), Positives = 39/105 (37%), Gaps = 9/105 (8%)
Query: 137 PTTFRGLRPREVQDPAPAQDAAEFLGEGAGPCWYSIVALPQKHIAIAIHPPQPAGQCHQA 196
P RG V PAP G A P + L Q A P P Q ++
Sbjct: 1785 PAVLRGRTVIYVPSPAPRAQPKGTPGPRATPRKVAPPCLAQP--AAPAKVPSPGQQRSRS 1842
Query: 197 IGHWPETVCSCT-------ADPPARLARPNISSVIRSSLGKYPLP 234
+ +T T A PPARLA+ SS ++S PLP
Sbjct: 1843 LHRPAKTSELATLSQPPRSATPPARLAKTPSSSSSQTSPASQPLP 1887
>gi|189242612 complement component 6 precursor [Homo sapiens]
Length = 934
Score = 27.7 bits (60), Expect = 8.9
Identities = 42/185 (22%), Positives = 68/185 (36%), Gaps = 52/185 (28%)
Query: 20 GRYVQQLQRLSFSVSRDGASSRGAREFVER-----------EVIDFARRNPGVVIY---- 64
G ++Q ++ S S+ R G S GA E+ E ++ + NP V+ +
Sbjct: 431 GSFIQGAEK-SISLIRGGRSEYGAALAWEKGSSGLEEKTFSEWLESVKENPAVIDFELAP 489
Query: 65 ----VNSRPCCVPR------VVAEYL-------------NGAVREESIHCKSVEEISTLV 101
V + PC V + + EY NG C V + T
Sbjct: 490 IVDLVRNIPCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPTLSGTECLCVCQSGTYG 549
Query: 102 QKLADQSGLDVIRIRKPFHTDNPSIQGQWHPFTNKPT---TFRGLRPREVQDPAPAQDAA 158
+ QS P + N ++ GQW +++ T T++ R RE +PAP +
Sbjct: 550 ENCEKQS---------PDYKSN-AVDGQWGCWSSWSTCDATYKRSRTRECNNPAPQRGGK 599
Query: 159 EFLGE 163
GE
Sbjct: 600 RCEGE 604
>gi|169636415 complement component 6 precursor [Homo sapiens]
Length = 934
Score = 27.7 bits (60), Expect = 8.9
Identities = 42/185 (22%), Positives = 68/185 (36%), Gaps = 52/185 (28%)
Query: 20 GRYVQQLQRLSFSVSRDGASSRGAREFVER-----------EVIDFARRNPGVVIY---- 64
G ++Q ++ S S+ R G S GA E+ E ++ + NP V+ +
Sbjct: 431 GSFIQGAEK-SISLIRGGRSEYGAALAWEKGSSGLEEKTFSEWLESVKENPAVIDFELAP 489
Query: 65 ----VNSRPCCVPR------VVAEYL-------------NGAVREESIHCKSVEEISTLV 101
V + PC V + + EY NG C V + T
Sbjct: 490 IVDLVRNIPCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPTLSGTECLCVCQSGTYG 549
Query: 102 QKLADQSGLDVIRIRKPFHTDNPSIQGQWHPFTNKPT---TFRGLRPREVQDPAPAQDAA 158
+ QS P + N ++ GQW +++ T T++ R RE +PAP +
Sbjct: 550 ENCEKQS---------PDYKSN-AVDGQWGCWSSWSTCDATYKRSRTRECNNPAPQRGGK 599
Query: 159 EFLGE 163
GE
Sbjct: 600 RCEGE 604
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,101,026
Number of Sequences: 37866
Number of extensions: 505308
Number of successful extensions: 1131
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1121
Number of HSP's gapped (non-prelim): 29
length of query: 235
length of database: 18,247,518
effective HSP length: 99
effective length of query: 136
effective length of database: 14,498,784
effective search space: 1971834624
effective search space used: 1971834624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.