Guide to the Human Genome
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Name: LOC100291728 Sequence: fasta or formatted (521aa) NCBI GI: 239757343
Description:

PREDICTED: hypothetical protein XP_002345253

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         50           3
 C cysteine            3.5         18           1
 D aspartate           3.5         18           1
 E glutamate           3.8         20           2
 F phenylalanine       1.7          9           1
 G glycine            11.9         62           3
 H histidine           4.0         21           1
 I isoleucine          2.1         11           1
 K lysine              1.9         10           1
 L leucine            10.9         57           3
 M methionine          1.9         10           2
 N asparagine          0.6          3           1
 P proline             8.8         46           2
 Q glutamine           4.6         24           1
 R arginine            6.7         35           2
 S serine             10.4         54           2
 T threonine           5.8         30           2
 V valine              5.6         29           2
 W tryptophan          1.3          7           1
 Y tyrosine            1.3          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345253 
LOC100289801          0.872   PREDICTED: hypothetical protein XP_002348033 
LOC100288135          0.869   PREDICTED: hypothetical protein XP_002343736 
LOC652586             0.015   PREDICTED: similar to facioscapulohumeral muscular ...
BHLHE41               0.011   basic helix-loop-helix domain containing, class B, 3...
LOC390595             0.011   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.011   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.011   PREDICTED: hypothetical protein 
LOC729417             0.011   PREDICTED: hypothetical protein 
LOC729417             0.011   PREDICTED: hypothetical protein 
LOC729417             0.011   PREDICTED: hypothetical protein 
MUC5AC                0.010   mucin 5AC 
COL8A2                0.010   collagen, type VIII, alpha 2 
MAP6                  0.010   microtubule-associated protein 6 isoform 2 
MAP6                  0.010   microtubule-associated protein 6 isoform 1 
ZNF516                0.010   zinc finger protein 516 
N4BP2L2               0.010   phosphonoformate immuno-associated protein 5 isoform ...
MAPT                  0.010   microtubule-associated protein tau isoform 2 
MAPT                  0.010   microtubule-associated protein tau isoform 4 
MAPT                  0.010   microtubule-associated protein tau isoform 3 
MAPT                  0.010   microtubule-associated protein tau isoform 1 
MAPT                  0.010   microtubule-associated protein tau isoform 5 
MUC5B                 0.010   mucin 5, subtype B, tracheobronchial 
SRCAP                 0.010   Snf2-related CBP activator protein 
FAM65A                0.010   hypothetical protein LOC79567 
LOC100131102          0.009   PREDICTED: hypothetical protein 
CELSR1                0.009   cadherin EGF LAG seven-pass G-type receptor 1 
SFPQ                  0.009   splicing factor proline/glutamine rich (polypyrimidin...
ZNF598                0.009   zinc finger protein 598 
ENAH                  0.008   enabled homolog isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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