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Search of human proteins with 28558998
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28558998 polypyrimidine tract-binding protein 1 isoform d
[Homo sapiens]
(197 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28558998 polypyrimidine tract-binding protein 1 isoform d [Ho... 396 e-111
gi|14165466 polypyrimidine tract-binding protein 1 isoform c [Ho... 371 e-103
gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Ho... 371 e-103
gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Hom... 371 e-103
gi|10863997 polypyrimidine tract binding protein 2 [Homo sapiens] 312 1e-85
gi|38569466 ROD1 regulator of differentiation 1 [Homo sapiens] 311 2e-85
gi|217416379 heterogeneous nuclear ribonucleoprotein L-like isof... 75 3e-14
gi|20149709 heterogeneous nuclear ribonucleoprotein L-like isofo... 75 3e-14
gi|52632385 heterogeneous nuclear ribonucleoprotein L isoform b ... 70 2e-12
gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a ... 70 2e-12
gi|224028246 non-POU domain containing, octamer-binding isoform ... 49 2e-06
gi|224028244 non-POU domain containing, octamer-binding isoform ... 49 2e-06
gi|34932414 non-POU domain containing, octamer-binding isoform 1... 49 2e-06
gi|13899354 RNA binding motif protein 4B [Homo sapiens] 47 1e-05
gi|93277122 RNA binding motif protein 4 [Homo sapiens] 46 2e-05
gi|38149981 small nuclear ribonucleoprotein polypeptide B'' [Hom... 46 2e-05
gi|4507123 small nuclear ribonucleoprotein polypeptide B'' [Homo... 46 2e-05
gi|62750354 matrin 3 [Homo sapiens] 40 0.002
gi|21626466 matrin 3 [Homo sapiens] 40 0.002
gi|38201714 ELAV-like 1 [Homo sapiens] 39 0.004
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila... 38 0.005
gi|9994185 RNA binding motif protein 7 [Homo sapiens] 38 0.006
gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens] 37 0.008
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 35 0.041
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 35 0.041
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 35 0.041
gi|109240550 paraspeckle protein 1 [Homo sapiens] 35 0.041
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s... 35 0.054
gi|20357578 apobec-1 complementation factor isoform 3 [Homo sapi... 34 0.092
gi|20357575 apobec-1 complementation factor isoform 2 [Homo sapi... 34 0.092
>gi|28558998 polypyrimidine tract-binding protein 1 isoform d [Homo
sapiens]
Length = 197
Score = 396 bits (1018), Expect = e-111
Identities = 197/197 (100%), Positives = 197/197 (100%)
Query: 1 MDGIVPDIAVGTKRVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHL 60
MDGIVPDIAVGTKRVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHL
Sbjct: 1 MDGIVPDIAVGTKRVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHL 60
Query: 61 NGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSA 120
NGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSA
Sbjct: 61 NGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSA 120
Query: 121 TLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNH 180
TLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNH
Sbjct: 121 TLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNH 180
Query: 181 DLGENHHLRVSFSKSTI 197
DLGENHHLRVSFSKSTI
Sbjct: 181 DLGENHHLRVSFSKSTI 197
>gi|14165466 polypyrimidine tract-binding protein 1 isoform c [Homo
sapiens]
Length = 531
Score = 371 bits (953), Expect = e-103
Identities = 184/185 (99%), Positives = 185/185 (100%)
Query: 13 KRVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 72
+RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRI
Sbjct: 347 ERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 406
Query: 73 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVS 132
TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVS
Sbjct: 407 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVS 466
Query: 133 EEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 192
EEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF
Sbjct: 467 EEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 526
Query: 193 SKSTI 197
SKSTI
Sbjct: 527 SKSTI 531
Score = 32.0 bits (71), Expect = 0.35
Identities = 14/14 (100%), Positives = 14/14 (100%)
Query: 1 MDGIVPDIAVGTKR 14
MDGIVPDIAVGTKR
Sbjct: 1 MDGIVPDIAVGTKR 14
>gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Homo
sapiens]
Length = 550
Score = 371 bits (953), Expect = e-103
Identities = 184/185 (99%), Positives = 185/185 (100%)
Query: 13 KRVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 72
+RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRI
Sbjct: 366 ERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 425
Query: 73 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVS 132
TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVS
Sbjct: 426 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVS 485
Query: 133 EEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 192
EEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF
Sbjct: 486 EEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 545
Query: 193 SKSTI 197
SKSTI
Sbjct: 546 SKSTI 550
Score = 32.0 bits (71), Expect = 0.35
Identities = 14/14 (100%), Positives = 14/14 (100%)
Query: 1 MDGIVPDIAVGTKR 14
MDGIVPDIAVGTKR
Sbjct: 1 MDGIVPDIAVGTKR 14
>gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Homo
sapiens]
Length = 557
Score = 371 bits (953), Expect = e-103
Identities = 184/185 (99%), Positives = 185/185 (100%)
Query: 13 KRVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 72
+RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRI
Sbjct: 373 ERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 432
Query: 73 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVS 132
TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVS
Sbjct: 433 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVS 492
Query: 133 EEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 192
EEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF
Sbjct: 493 EEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 552
Query: 193 SKSTI 197
SKSTI
Sbjct: 553 SKSTI 557
Score = 32.0 bits (71), Expect = 0.35
Identities = 14/14 (100%), Positives = 14/14 (100%)
Query: 1 MDGIVPDIAVGTKR 14
MDGIVPDIAVGTKR
Sbjct: 1 MDGIVPDIAVGTKR 14
>gi|10863997 polypyrimidine tract binding protein 2 [Homo sapiens]
Length = 531
Score = 312 bits (800), Expect = 1e-85
Identities = 151/183 (82%), Positives = 171/183 (93%), Gaps = 1/183 (0%)
Query: 15 VTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 74
VTPQSLF LFGVYGDVQRVKIL+NKK++AL+QMADGNQ+QLAM+HLNG K++GK IR+TL
Sbjct: 350 VTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTL 409
Query: 75 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEE 134
SKHQ VQLPREG +DQGLTKD+GNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSV+EE
Sbjct: 410 SKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEE 469
Query: 135 DLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 194
DL+ LF++ GG VK FKFFQ D KMAL+QM +VEEA+QALIDLHN++LGENHHLRVSFSK
Sbjct: 470 DLRTLFANTGGTVKAFKFFQ-DHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 528
Query: 195 STI 197
STI
Sbjct: 529 STI 531
Score = 32.7 bits (73), Expect = 0.20
Identities = 45/193 (23%), Positives = 84/193 (43%), Gaps = 19/193 (9%)
Query: 15 VTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLH--GKPIRI 72
VT + L +G V + +L K + A +++A A +++ + H +PI I
Sbjct: 70 VTETEVIALGLPFGKVTNILMLKGKNQ-AFLELATEEAAITMVNYYSAVTPHLRNQPIYI 128
Query: 73 TLSKHQNVQLPRE-GQEDQGLTK-----DYGNSPLHRFKKPGSKNFQNIFPPSAT----L 122
S H+ ++ Q Q + + N+PL G+ ++ P+ + +
Sbjct: 129 QYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLS-----GTTVSESAVTPAQSPVLRI 183
Query: 123 HLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL 182
+ N+ V+ + L +FS G V+K F + ++ AL+Q G A QA + L ++
Sbjct: 184 IIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNI 243
Query: 183 -GENHHLRVSFSK 194
LR+ FSK
Sbjct: 244 YNACCTLRIDFSK 256
>gi|38569466 ROD1 regulator of differentiation 1 [Homo sapiens]
Length = 552
Score = 311 bits (798), Expect = 2e-85
Identities = 153/183 (83%), Positives = 166/183 (90%)
Query: 15 VTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 74
+TP LFILFGVYGDV RVKI+FNKKENALVQMAD NQAQLAM+HL+G +L+GK +R TL
Sbjct: 370 ITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATL 429
Query: 75 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEE 134
SKHQ VQLPREGQEDQGLTKD+ NSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSV+ +
Sbjct: 430 SKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVD 489
Query: 135 DLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 194
DLK LF G VK FKFFQKDRKMALIQ+GSVEEA+QALI+LHNHDLGENHHLRVSFSK
Sbjct: 490 DLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 549
Query: 195 STI 197
STI
Sbjct: 550 STI 552
Score = 33.5 bits (75), Expect = 0.12
Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 12/192 (6%)
Query: 15 VTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSH---LNGHKLHGKPIR 71
VT + L +G V + +L K + A ++MA A +++ + H L +P+
Sbjct: 70 VTEAEIISLGLPFGKVTNLLMLKGKSQ-AFLEMASEEAAVTMVNYYTPITPH-LRSQPVY 127
Query: 72 ITLSKHQNVQ---LPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFP---PSATLHLS 125
I S H+ ++ LP + + L G N + P P + +
Sbjct: 128 IQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIE 187
Query: 126 NIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL-GE 184
N+ V+ E L +FS G V+K F + ++ AL+Q A A + L ++
Sbjct: 188 NLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNA 247
Query: 185 NHHLRVSFSKST 196
LR+ FSK T
Sbjct: 248 CCTLRIDFSKLT 259
Score = 28.9 bits (63), Expect = 3.0
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 109 SKNFQNIFPP---SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMG 165
SK F+ PP S LHL IP V+E ++ L G V K + A ++M
Sbjct: 45 SKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTN--LLMLKGKSQAFLEMA 102
Query: 166 SVEEAV 171
S E AV
Sbjct: 103 SEEAAV 108
>gi|217416379 heterogeneous nuclear ribonucleoprotein L-like isoform
2 [Homo sapiens]
Length = 537
Score = 75.5 bits (184), Expect = 3e-14
Identities = 58/190 (30%), Positives = 98/190 (51%), Gaps = 14/190 (7%)
Query: 20 LFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 79
+F LF +YG++++VK + ALV+M D + A++HLN KL GK + + +SK +
Sbjct: 347 VFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHS 406
Query: 80 VQLPREGQEDQGLT--KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 137
V + + + G + KD+ S +RF G + I PPS LH N+P V+EE
Sbjct: 407 VVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFT 466
Query: 138 VLFSSNGGVVKGFKFFQKDRK------MALIQMGSVEEAVQALIDLHNHDL----GEN-H 186
L + + V+ K+ D K L++ +AV+AL L+++ + G N +
Sbjct: 467 KLCNDH-EVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPY 525
Query: 187 HLRVSFSKST 196
L++ FS S+
Sbjct: 526 TLKLCFSTSS 535
>gi|20149709 heterogeneous nuclear ribonucleoprotein L-like isoform
1 [Homo sapiens]
Length = 542
Score = 75.5 bits (184), Expect = 3e-14
Identities = 58/190 (30%), Positives = 98/190 (51%), Gaps = 14/190 (7%)
Query: 20 LFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 79
+F LF +YG++++VK + ALV+M D + A++HLN KL GK + + +SK +
Sbjct: 352 VFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHS 411
Query: 80 VQLPREGQEDQGLT--KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 137
V + + + G + KD+ S +RF G + I PPS LH N+P V+EE
Sbjct: 412 VVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFT 471
Query: 138 VLFSSNGGVVKGFKFFQKDRK------MALIQMGSVEEAVQALIDLHNHDL----GEN-H 186
L + + V+ K+ D K L++ +AV+AL L+++ + G N +
Sbjct: 472 KLCNDH-EVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPY 530
Query: 187 HLRVSFSKST 196
L++ FS S+
Sbjct: 531 TLKLCFSTSS 540
>gi|52632385 heterogeneous nuclear ribonucleoprotein L isoform b
[Homo sapiens]
Length = 456
Score = 69.7 bits (169), Expect = 2e-12
Identities = 51/170 (30%), Positives = 87/170 (51%), Gaps = 8/170 (4%)
Query: 20 LFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 79
+F +F +YG+V++VK + +K A+V+MADG A++HLN + + G+ + + +SK Q
Sbjct: 266 VFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSK-QP 324
Query: 80 VQLPRE--GQEDQGLT-KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDL 136
+P + G ED + KD+ S +RF P I PS LH N P V+EE+
Sbjct: 325 AIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENF 384
Query: 137 KVLFSSNG----GVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL 182
+ G VK F + L++ S +A++ L L+++ +
Sbjct: 385 FEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQM 434
Score = 31.6 bits (70), Expect = 0.46
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 15 VTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGK--PIRI 72
+T L+ + G VQR+ I A+V+ AQ A + LNG ++ ++I
Sbjct: 73 ITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKI 132
Query: 73 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGS 109
+K + + + Q+ T DY N L PGS
Sbjct: 133 EYAKPTRLNVFKNDQD----TWDYTNPNLSGQGDPGS 165
>gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a
[Homo sapiens]
Length = 589
Score = 69.7 bits (169), Expect = 2e-12
Identities = 51/170 (30%), Positives = 87/170 (51%), Gaps = 8/170 (4%)
Query: 20 LFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 79
+F +F +YG+V++VK + +K A+V+MADG A++HLN + + G+ + + +SK Q
Sbjct: 399 VFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSK-QP 457
Query: 80 VQLPRE--GQEDQGLT-KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDL 136
+P + G ED + KD+ S +RF P I PS LH N P V+EE+
Sbjct: 458 AIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENF 517
Query: 137 KVLFSSNG----GVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL 182
+ G VK F + L++ S +A++ L L+++ +
Sbjct: 518 FEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQM 567
Score = 31.6 bits (70), Expect = 0.46
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 15 VTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGK--PIRI 72
+T L+ + G VQR+ I A+V+ AQ A + LNG ++ ++I
Sbjct: 206 ITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKI 265
Query: 73 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGS 109
+K + + + Q+ T DY N L PGS
Sbjct: 266 EYAKPTRLNVFKNDQD----TWDYTNPNLSGQGDPGS 298
>gi|224028246 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 49.3 bits (116), Expect = 2e-06
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 16/116 (13%)
Query: 82 LPREGQE----DQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 137
+P GQ+ ++GLT D N F+KPG K F + L + N+PP ++EE+++
Sbjct: 41 IPANGQQASSQNEGLTIDLKN-----FRKPGEKTFTQ----RSRLFVGNLPPDITEEEMR 91
Query: 138 VLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 193
LF G G F KD+ I++ + A A ++L N L LRV F+
Sbjct: 92 KLFEKYGKA--GEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPL-RGKQLRVRFA 144
>gi|224028244 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 49.3 bits (116), Expect = 2e-06
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 16/116 (13%)
Query: 82 LPREGQE----DQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 137
+P GQ+ ++GLT D N F+KPG K F + L + N+PP ++EE+++
Sbjct: 41 IPANGQQASSQNEGLTIDLKN-----FRKPGEKTFTQ----RSRLFVGNLPPDITEEEMR 91
Query: 138 VLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 193
LF G G F KD+ I++ + A A ++L N L LRV F+
Sbjct: 92 KLFEKYGKA--GEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPL-RGKQLRVRFA 144
>gi|34932414 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 49.3 bits (116), Expect = 2e-06
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 16/116 (13%)
Query: 82 LPREGQE----DQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 137
+P GQ+ ++GLT D N F+KPG K F + L + N+PP ++EE+++
Sbjct: 41 IPANGQQASSQNEGLTIDLKN-----FRKPGEKTFTQ----RSRLFVGNLPPDITEEEMR 91
Query: 138 VLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 193
LF G G F KD+ I++ + A A ++L N L LRV F+
Sbjct: 92 KLFEKYGKA--GEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPL-RGKQLRVRFA 144
>gi|13899354 RNA binding motif protein 4B [Homo sapiens]
Length = 359
Score = 46.6 bits (109), Expect = 1e-05
Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 45/183 (24%)
Query: 13 KRVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 72
+ T Q + LF YG V I+ K V + D A+ A+ +L+ +KLHG I +
Sbjct: 11 REATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINV 67
Query: 73 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVS 132
SK+++ S LH+ NI P+ +
Sbjct: 68 EASKNKS-------------------------------------KASTKLHVGNISPTCT 90
Query: 133 EEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL-GENHHLRVS 191
++L+ F G V++ + A + M E+AV+A+ L N + G+ H+++S
Sbjct: 91 NQELRAKFEEYGPVIE----CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Query: 192 FSK 194
S+
Sbjct: 147 TSR 149
>gi|93277122 RNA binding motif protein 4 [Homo sapiens]
Length = 364
Score = 46.2 bits (108), Expect = 2e-05
Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 45/183 (24%)
Query: 13 KRVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 72
+ T Q + LF YG V I+ K V + D A+ A+ +L+ +KLHG I +
Sbjct: 11 REATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINV 67
Query: 73 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVS 132
SK+++ S LH+ NI P+ +
Sbjct: 68 EASKNKS-------------------------------------KTSTKLHVGNISPTCT 90
Query: 133 EEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL-GENHHLRVS 191
++L+ F G V++ + A + M E+AV+A+ L N + G+ H+++S
Sbjct: 91 NKELRAKFEEYGPVIE----CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Query: 192 FSK 194
S+
Sbjct: 147 TSR 149
>gi|38149981 small nuclear ribonucleoprotein polypeptide B'' [Homo
sapiens]
Length = 225
Score = 46.2 bits (108), Expect = 2e-05
Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 25/206 (12%)
Query: 13 KRVTPQSLFILFGVYGDVQRVKILFNKKEN--ALVQMADGNQAQLAMSHLNGHKLHGKPI 70
K +SL+ LF +G V + L K A V + + A+ L G +GKP+
Sbjct: 20 KEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPM 79
Query: 71 RIT--------LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPG-----SKNFQNI-- 115
RI +SK + +E ++++ K + KKPG S N Q
Sbjct: 80 RIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTNKKPGQGTPNSANTQGNST 139
Query: 116 -------FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVE 168
+PP+ L L+N+P +E L +LF+ G K + +A ++ +
Sbjct: 140 PNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPG-FKEVRLVPGRHDIAFVEFENDG 198
Query: 169 EAVQALIDLHNHDLGENHHLRVSFSK 194
+A A L + +H ++++++K
Sbjct: 199 QAGAARDALQGFKITPSHAMKITYAK 224
>gi|4507123 small nuclear ribonucleoprotein polypeptide B'' [Homo
sapiens]
Length = 225
Score = 46.2 bits (108), Expect = 2e-05
Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 25/206 (12%)
Query: 13 KRVTPQSLFILFGVYGDVQRVKILFNKKEN--ALVQMADGNQAQLAMSHLNGHKLHGKPI 70
K +SL+ LF +G V + L K A V + + A+ L G +GKP+
Sbjct: 20 KEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPM 79
Query: 71 RIT--------LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPG-----SKNFQNI-- 115
RI +SK + +E ++++ K + KKPG S N Q
Sbjct: 80 RIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTNKKPGQGTPNSANTQGNST 139
Query: 116 -------FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVE 168
+PP+ L L+N+P +E L +LF+ G K + +A ++ +
Sbjct: 140 PNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPG-FKEVRLVPGRHDIAFVEFENDG 198
Query: 169 EAVQALIDLHNHDLGENHHLRVSFSK 194
+A A L + +H ++++++K
Sbjct: 199 QAGAARDALQGFKITPSHAMKITYAK 224
>gi|62750354 matrin 3 [Homo sapiens]
Length = 847
Score = 39.7 bits (91), Expect = 0.002
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 26/145 (17%)
Query: 35 ILFNKKENALVQMADGNQAQLAMSHLNGHK--LHGKPIRITLS-KHQNVQLPREGQEDQG 91
++ NK A ++MA AQ A+ + + GKP+R+ LS K++ ++ P EG+ DQ
Sbjct: 429 LILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIKKP-EGKPDQ- 486
Query: 92 LTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK 151
F +HLSN+P S + + + G +K +
Sbjct: 487 -------------------KFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNY- 526
Query: 152 FFQKDRKMALIQMGSVEEAVQALID 176
+ + A I+M + E+A+ A++D
Sbjct: 527 ILMRMKSQAFIEMETREDAM-AMVD 550
>gi|21626466 matrin 3 [Homo sapiens]
Length = 847
Score = 39.7 bits (91), Expect = 0.002
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 26/145 (17%)
Query: 35 ILFNKKENALVQMADGNQAQLAMSHLNGHK--LHGKPIRITLS-KHQNVQLPREGQEDQG 91
++ NK A ++MA AQ A+ + + GKP+R+ LS K++ ++ P EG+ DQ
Sbjct: 429 LILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIKKP-EGKPDQ- 486
Query: 92 LTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK 151
F +HLSN+P S + + + G +K +
Sbjct: 487 -------------------KFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNY- 526
Query: 152 FFQKDRKMALIQMGSVEEAVQALID 176
+ + A I+M + E+A+ A++D
Sbjct: 527 ILMRMKSQAFIEMETREDAM-AMVD 550
>gi|38201714 ELAV-like 1 [Homo sapiens]
Length = 326
Score = 38.5 bits (88), Expect = 0.004
Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 35/210 (16%)
Query: 13 KRVTPQSLFILFGVYGDVQRVKILFNKKEN-----ALVQMADGNQAQLAMSHLNGHKLHG 67
+ +T + + +F +G + ++L ++ A ++ ++A+ A++ NGHK G
Sbjct: 115 RTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPG 174
Query: 68 KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNI-FPPSATLHLS- 125
IT+ N P + + L++ Y +SP RF P Q F P H+S
Sbjct: 175 SSEPITVKFAAN---PNQNKNVALLSQLY-HSPARRFGGPVHHQAQRFRFSPMGVDHMSG 230
Query: 126 ----NIPPSVS------------EEDLKVLFSSNG--GVVKGFKFFQ-----KDRKMALI 162
N+P + S + D +L+ G G V K + K + +
Sbjct: 231 LSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 290
Query: 163 QMGSVEEAVQALIDLHNHDLGENHHLRVSF 192
M + EEA A+ L+ + LG+ L+VSF
Sbjct: 291 TMTNYEEAAMAIASLNGYRLGDK-ILQVSF 319
>gi|115511032 ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
Length = 359
Score = 38.1 bits (87), Expect = 0.005
Identities = 37/180 (20%), Positives = 76/180 (42%), Gaps = 59/180 (32%)
Query: 13 KRVTPQSLFILFGVYGDVQRVKILFNKKEN-----ALVQMADGNQAQLAMSHLNGHKLHG 67
+ +T + L LFG G+++ K++ +K V D A+ A++ LNG +L
Sbjct: 48 QNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT 107
Query: 68 KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNI 127
K I+++ + +P S + ++ A L++S +
Sbjct: 108 KTIKVS------------------------------YARPSSASIRD-----ANLYVSGL 132
Query: 128 PPSVSEEDLKVLFSSNG-------------GVVKGFKFFQKDRKMALIQMGSVEEAVQAL 174
P ++++++L+ LFS G G+ +G F + D+++ EEA++ L
Sbjct: 133 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI------EAEEAIKGL 186
>gi|9994185 RNA binding motif protein 7 [Homo sapiens]
Length = 266
Score = 37.7 bits (86), Expect = 0.006
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 14 RVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKP 69
+VT + LF LF G V +VKI +K K+ A V AM+ LNG KL+G+P
Sbjct: 20 KVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLNGIKLYGRP 79
Query: 70 IRI 72
I+I
Sbjct: 80 IKI 82
>gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
Length = 382
Score = 37.4 bits (85), Expect = 0.008
Identities = 36/175 (20%), Positives = 76/175 (43%), Gaps = 23/175 (13%)
Query: 15 VTPQSLFILFGVYGDVQRVKILFN----KKENALVQMADGNQAQLAMSHLNGHKLHGKPI 70
+ + L LF YG + VK++ + K V+ AQ A+ L+G + GK +
Sbjct: 210 IDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVL 269
Query: 71 RITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPS 130
+ ++ + +L + + L R K+ PP +++ N+ +
Sbjct: 270 YVGRAQKKIERLAELRRRFERL----------RLKEKSR-------PPGVPIYIKNLDET 312
Query: 131 VSEEDLKVLFSSNGGVVKGFKFFQ--KDRKMALIQMGSVEEAVQALIDLHNHDLG 183
+++E LK FSS G + + + + + ++ S EEA +A+ +++ +G
Sbjct: 313 INDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVG 367
Score = 27.7 bits (60), Expect = 6.6
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 24 FGVYGDVQRVKILFNKKEN---ALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 76
F +G + R K++ + +V + +A A+ +NG + KP+ +TL +
Sbjct: 322 FSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 35.0 bits (79), Expect = 0.041
Identities = 54/226 (23%), Positives = 89/226 (39%), Gaps = 40/226 (17%)
Query: 4 IVPDIAVGTKRVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGH 63
+V ++ GT Q F FG G V +L A+V+ + +A+ A HL
Sbjct: 590 LVKNLPAGTLAAQLQETFGHFGSLGRV----LLPEGGITAIVEFLEPLEARKAFRHLAYS 645
Query: 64 KLHGKPIRI----------TLSKHQNVQ----------------LPR-EGQEDQGLTKDY 96
K H P+ + T + + +Q +P E ED+ T++
Sbjct: 646 KFHHVPLYLEWAPVGVFSSTAPQKKKLQDTPSEPMEKDPAEPETVPDGETPEDENPTEEG 705
Query: 97 G-NSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 155
NS ++ + + P TL + N+ +EE LK +FS G V +K
Sbjct: 706 ADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKK 765
Query: 156 DRKMALIQMG-------SVEEAVQALIDLHNHDLGENHHLRVSFSK 194
++ L+ MG E+A +AL L H + + H L V S+
Sbjct: 766 NKAGVLLSMGFGFVEYRKPEQAQKALKQLQGH-VVDGHKLEVRISE 810
Score = 28.1 bits (61), Expect = 5.0
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 122 LHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQALIDLH 178
L + N+P + EE + LF++ G + F KD RK I S EEA +A
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHF- 62
Query: 179 NHDLGENHHLRVSFSKS 195
N + + V F KS
Sbjct: 63 NKSFIDTSRITVEFCKS 79
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 35.0 bits (79), Expect = 0.041
Identities = 54/226 (23%), Positives = 89/226 (39%), Gaps = 40/226 (17%)
Query: 4 IVPDIAVGTKRVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGH 63
+V ++ GT Q F FG G V +L A+V+ + +A+ A HL
Sbjct: 590 LVKNLPAGTLAAQLQETFGHFGSLGRV----LLPEGGITAIVEFLEPLEARKAFRHLAYS 645
Query: 64 KLHGKPIRI----------TLSKHQNVQ----------------LPR-EGQEDQGLTKDY 96
K H P+ + T + + +Q +P E ED+ T++
Sbjct: 646 KFHHVPLYLEWAPVGVFSSTAPQKKKLQDTPSEPMEKDPAEPETVPDGETPEDENPTEEG 705
Query: 97 G-NSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 155
NS ++ + + P TL + N+ +EE LK +FS G V +K
Sbjct: 706 ADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKK 765
Query: 156 DRKMALIQMG-------SVEEAVQALIDLHNHDLGENHHLRVSFSK 194
++ L+ MG E+A +AL L H + + H L V S+
Sbjct: 766 NKAGVLLSMGFGFVEYRKPEQAQKALKQLQGH-VVDGHKLEVRISE 810
Score = 28.1 bits (61), Expect = 5.0
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 122 LHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQALIDLH 178
L + N+P + EE + LF++ G + F KD RK I S EEA +A
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHF- 62
Query: 179 NHDLGENHHLRVSFSKS 195
N + + V F KS
Sbjct: 63 NKSFIDTSRITVEFCKS 79
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 35.0 bits (79), Expect = 0.041
Identities = 54/226 (23%), Positives = 89/226 (39%), Gaps = 40/226 (17%)
Query: 4 IVPDIAVGTKRVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGH 63
+V ++ GT Q F FG G V +L A+V+ + +A+ A HL
Sbjct: 590 LVKNLPAGTLAAQLQETFGHFGSLGRV----LLPEGGITAIVEFLEPLEARKAFRHLAYS 645
Query: 64 KLHGKPIRI----------TLSKHQNVQ----------------LPR-EGQEDQGLTKDY 96
K H P+ + T + + +Q +P E ED+ T++
Sbjct: 646 KFHHVPLYLEWAPVGVFSSTAPQKKKLQDTPSEPMEKDPAEPETVPDGETPEDENPTEEG 705
Query: 97 G-NSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 155
NS ++ + + P TL + N+ +EE LK +FS G V +K
Sbjct: 706 ADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKK 765
Query: 156 DRKMALIQMG-------SVEEAVQALIDLHNHDLGENHHLRVSFSK 194
++ L+ MG E+A +AL L H + + H L V S+
Sbjct: 766 NKAGVLLSMGFGFVEYRKPEQAQKALKQLQGH-VVDGHKLEVRISE 810
Score = 28.1 bits (61), Expect = 5.0
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 122 LHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQALIDLH 178
L + N+P + EE + LF++ G + F KD RK I S EEA +A
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHF- 62
Query: 179 NHDLGENHHLRVSFSKS 195
N + + V F KS
Sbjct: 63 NKSFIDTSRITVEFCKS 79
>gi|109240550 paraspeckle protein 1 [Homo sapiens]
Length = 523
Score = 35.0 bits (79), Expect = 0.041
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Query: 88 EDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVV 147
E+ G T D + F KPG K + L + N+P ++EED K LF G
Sbjct: 59 EEMGFTID-----IKSFLKPGEKTYTQ----RCRLFVGNLPTDITEEDFKRLFERYGEPS 109
Query: 148 KGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 193
+ F +DR I++ S A A +L L ++ LR+ F+
Sbjct: 110 E--VFINRDRGFGFIRLESRTLAEIAKAELDGTIL-KSRPLRIRFA 152
>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
sapiens]
Length = 614
Score = 34.7 bits (78), Expect = 0.054
Identities = 38/184 (20%), Positives = 77/184 (41%), Gaps = 41/184 (22%)
Query: 15 VTPQSLFILFGVYGDVQRVKILFNKKENA----LVQMADGNQAQLAMSHLNGHKLHGKPI 70
V Q L LF +G + VK++ + ++ V +AQ A+ H+NG ++ G
Sbjct: 202 VDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSG--- 258
Query: 71 RITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPS 130
R+ + ++ R+ + + + K+ + +Q + L++ N+ S
Sbjct: 259 RLLYAGRAQKRVERQNELKR---------RFEQMKQDRLRRYQGV-----NLYVKNLDDS 304
Query: 131 VSEEDLKVLFS-----------SNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHN 179
+ ++ L+ FS + GG KGF F + S EEA +A+ +++
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGF---------VCFSSPEEATKAVTEMNG 355
Query: 180 HDLG 183
+G
Sbjct: 356 RIVG 359
>gi|20357578 apobec-1 complementation factor isoform 3 [Homo
sapiens]
Length = 594
Score = 33.9 bits (76), Expect = 0.092
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 28 GDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 76
G V+RVK + ++ A V ++ A AM LNG L G PI +TL+K
Sbjct: 265 GAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 310
>gi|20357575 apobec-1 complementation factor isoform 2 [Homo
sapiens]
Length = 594
Score = 33.9 bits (76), Expect = 0.092
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 28 GDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 76
G V+RVK + ++ A V ++ A AM LNG L G PI +TL+K
Sbjct: 257 GAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 302
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,532,956
Number of Sequences: 37866
Number of extensions: 330430
Number of successful extensions: 1085
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 986
Number of HSP's gapped (non-prelim): 157
length of query: 197
length of database: 18,247,518
effective HSP length: 97
effective length of query: 100
effective length of database: 14,574,516
effective search space: 1457451600
effective search space used: 1457451600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.