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Search of human proteins with 28395045
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28395045 Bardet-Biedl syndrome 1 [Homo sapiens]
(593 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28395045 Bardet-Biedl syndrome 1 [Homo sapiens] 1168 0.0
gi|219842319 Bardet-Biedl syndrome 2 protein [Homo sapiens] 36 0.11
gi|4502399 filensin isoform 1 [Homo sapiens] 33 0.97
gi|239787151 filensin isoform 2 [Homo sapiens] 33 0.97
gi|116686120 periaxin isoform 2 [Homo sapiens] 32 1.3
gi|199560800 kinesin family member 9 isoform 2 [Homo sapiens] 32 1.3
gi|199560791 kinesin family member 9 isoform 2 [Homo sapiens] 32 1.3
gi|116517224 coiled-coil domain containing 144B [Homo sapiens] 32 1.3
gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Hom... 32 1.6
gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Hom... 32 1.6
gi|164663826 pregnancy specific beta-1-glycoprotein 11 isoform 2... 32 1.6
gi|164663824 pregnancy specific beta-1-glycoprotein 11 isoform 2... 32 1.6
gi|90669307 cyclin B3 isoform 3 [Homo sapiens] 32 2.2
gi|46852174 kinesin family member 3A [Homo sapiens] 31 2.8
gi|33350932 cytoplasmic dynein 1 heavy chain 1 [Homo sapiens] 31 2.8
gi|223972704 hypothetical protein LOC284418 [Homo sapiens] 31 3.7
gi|55741661 hypothetical protein LOC57653 [Homo sapiens] 31 3.7
gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-li... 30 4.8
gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-li... 30 4.8
gi|187608615 tyrosine kinase 2 [Homo sapiens] 30 6.3
gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens] 30 8.2
gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens] 30 8.2
gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens] 30 8.2
gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens] 30 8.2
gi|224809470 retinoic acid induced 14 isoform a [Homo sapiens] 30 8.2
gi|224809468 retinoic acid induced 14 isoform a [Homo sapiens] 30 8.2
gi|188528696 erlectin isoform 2 [Homo sapiens] 30 8.2
gi|20070264 erlectin isoform 1 [Homo sapiens] 30 8.2
gi|13876384 cell division cycle associated 3 [Homo sapiens] 30 8.2
gi|164663836 pregnancy specific beta-1-glycoprotein 11 isoform 1... 30 8.2
>gi|28395045 Bardet-Biedl syndrome 1 [Homo sapiens]
Length = 593
Score = 1168 bits (3021), Expect = 0.0
Identities = 593/593 (100%), Positives = 593/593 (100%)
Query: 1 MAAASSSDSDACGAESNEANSKWLDAHYDPMANIHTFSACLALADLHGDGEYKLVVGDLG 60
MAAASSSDSDACGAESNEANSKWLDAHYDPMANIHTFSACLALADLHGDGEYKLVVGDLG
Sbjct: 1 MAAASSSDSDACGAESNEANSKWLDAHYDPMANIHTFSACLALADLHGDGEYKLVVGDLG 60
Query: 61 PGGQQPRLKVLKGPLVMTESPLPALPAAAATFLMEQHEPRTPALALASGPCVYVYKNLRP 120
PGGQQPRLKVLKGPLVMTESPLPALPAAAATFLMEQHEPRTPALALASGPCVYVYKNLRP
Sbjct: 61 PGGQQPRLKVLKGPLVMTESPLPALPAAAATFLMEQHEPRTPALALASGPCVYVYKNLRP 120
Query: 121 YFKFSLPQLPPNPLEQDLWNQAKEDRIDPLTLKEMLESIRETAEEPLSIQSLRFLQLELS 180
YFKFSLPQLPPNPLEQDLWNQAKEDRIDPLTLKEMLESIRETAEEPLSIQSLRFLQLELS
Sbjct: 121 YFKFSLPQLPPNPLEQDLWNQAKEDRIDPLTLKEMLESIRETAEEPLSIQSLRFLQLELS 180
Query: 181 EMEAFVNQHKSNSIKRQTVITTMTTLKKNLADEDAVSCLVLGTENKELLVLDPEAFTILA 240
EMEAFVNQHKSNSIKRQTVITTMTTLKKNLADEDAVSCLVLGTENKELLVLDPEAFTILA
Sbjct: 181 EMEAFVNQHKSNSIKRQTVITTMTTLKKNLADEDAVSCLVLGTENKELLVLDPEAFTILA 240
Query: 241 KMSLPSVPVFLEVSGQFDVEFRLAAACRNGNIYILRRDSKHPKYCIELSAQPVGLIRVHK 300
KMSLPSVPVFLEVSGQFDVEFRLAAACRNGNIYILRRDSKHPKYCIELSAQPVGLIRVHK
Sbjct: 241 KMSLPSVPVFLEVSGQFDVEFRLAAACRNGNIYILRRDSKHPKYCIELSAQPVGLIRVHK 300
Query: 301 VLVVGSTQDSLHGFTHKGKKLWTVQMPAAILTMNLLEQHSRGLQAVMAGLANGEVRIYRD 360
VLVVGSTQDSLHGFTHKGKKLWTVQMPAAILTMNLLEQHSRGLQAVMAGLANGEVRIYRD
Sbjct: 301 VLVVGSTQDSLHGFTHKGKKLWTVQMPAAILTMNLLEQHSRGLQAVMAGLANGEVRIYRD 360
Query: 361 KALLNVIHTPDAVTSLCFGRYGREDNTLIMTTRGGGLIIKILKRTAVFVEGGSEVGPPPA 420
KALLNVIHTPDAVTSLCFGRYGREDNTLIMTTRGGGLIIKILKRTAVFVEGGSEVGPPPA
Sbjct: 361 KALLNVIHTPDAVTSLCFGRYGREDNTLIMTTRGGGLIIKILKRTAVFVEGGSEVGPPPA 420
Query: 421 QAMKLNVPRKTRLYVDQTLREREAGTAMHRAFQTDLYLLRLRAARAYLQALESSLSPLST 480
QAMKLNVPRKTRLYVDQTLREREAGTAMHRAFQTDLYLLRLRAARAYLQALESSLSPLST
Sbjct: 421 QAMKLNVPRKTRLYVDQTLREREAGTAMHRAFQTDLYLLRLRAARAYLQALESSLSPLST 480
Query: 481 TAREPLKLHAVVQGLGPTFKLTLHLQNTSTTRPVLGLLVCFLYNEALYSLPRAFFKVPLL 540
TAREPLKLHAVVQGLGPTFKLTLHLQNTSTTRPVLGLLVCFLYNEALYSLPRAFFKVPLL
Sbjct: 481 TAREPLKLHAVVQGLGPTFKLTLHLQNTSTTRPVLGLLVCFLYNEALYSLPRAFFKVPLL 540
Query: 541 VPGLNYPLETFVESLSNKGISDIIKVLVLREGQSAPLLSAHVNMPGSEGLAAA 593
VPGLNYPLETFVESLSNKGISDIIKVLVLREGQSAPLLSAHVNMPGSEGLAAA
Sbjct: 541 VPGLNYPLETFVESLSNKGISDIIKVLVLREGQSAPLLSAHVNMPGSEGLAAA 593
>gi|219842319 Bardet-Biedl syndrome 2 protein [Homo sapiens]
Length = 721
Score = 35.8 bits (81), Expect = 0.11
Identities = 42/191 (21%), Positives = 77/191 (40%), Gaps = 29/191 (15%)
Query: 187 NQHKSNSIKRQTVITTMTTLKKNLADEDAVSCLVLGTENKELLVLDPEAFTILAKMSLPS 246
NQH S S Q+ + + +L L AVSCL G N EL +A + + +L +
Sbjct: 49 NQHVSASRVFQSPLESDVSL---LNINQAVSCLTAGVLNPEL---GYDALLVGTQTNLLA 102
Query: 247 VPVFLEVSGQFDVEFRLAAACRNGNIYILRRDSKHPKYCIELSAQPVGLIRVHKVLVVGS 306
V+ D+ +R A N + D P L +
Sbjct: 103 YDVY----NNSDLFYREVADGANAIVLGTLGDISSP-------------------LAIIG 139
Query: 307 TQDSLHGFTHKGKKLWTVQMPAAILTMNLLEQHSRGLQAVMAGLANGEVRIYRDKALLNV 366
+L GF H+G L+ + ++ L + G + ++ G + ++R++++ ++
Sbjct: 140 GNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGKKELLVGSEDFDIRVFKEDEIVAE 199
Query: 367 IHTPDAVTSLC 377
+ + VTSLC
Sbjct: 200 MTETEIVTSLC 210
>gi|4502399 filensin isoform 1 [Homo sapiens]
Length = 665
Score = 32.7 bits (73), Expect = 0.97
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
Query: 150 LTLKEMLESIRETAEEPLSIQSLRFLQLEL----SEMEAFVNQHKSNSIKRQTVITTM 203
L LKEMLE + + A+E L + +LR LQLE ++ A ++HK N ++ QT I+ +
Sbjct: 135 LLLKEMLERLNKEADEAL-LHNLR-LQLEAQFLQDDISAAKDRHKKNLLEVQTYISIL 190
>gi|239787151 filensin isoform 2 [Homo sapiens]
Length = 540
Score = 32.7 bits (73), Expect = 0.97
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
Query: 150 LTLKEMLESIRETAEEPLSIQSLRFLQLEL----SEMEAFVNQHKSNSIKRQTVITTM 203
L LKEMLE + + A+E L + +LR LQLE ++ A ++HK N ++ QT I+ +
Sbjct: 10 LLLKEMLERLNKEADEAL-LHNLR-LQLEAQFLQDDISAAKDRHKKNLLEVQTYISIL 65
>gi|116686120 periaxin isoform 2 [Homo sapiens]
Length = 1461
Score = 32.3 bits (72), Expect = 1.3
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 57 GDLGPGGQQPRLKVLKGPLVMTESPLPALPAAAATFLMEQHE---PRTPALALASGPCVY 113
G LG GQ P K+ KG V E P A F + E P+ PA+ + G
Sbjct: 863 GALGLQGQVPAAKMGKGERV--EGPEVAAGVREVGFRVPSVEIVTPQLPAVEIEEGRLEM 920
Query: 114 VYKNLRPYFKFSLPQ 128
+ ++P KFSLP+
Sbjct: 921 IETKVKPSSKFSLPK 935
>gi|199560800 kinesin family member 9 isoform 2 [Homo sapiens]
Length = 790
Score = 32.3 bits (72), Expect = 1.3
Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 30/146 (20%)
Query: 121 YFKFSLPQLPPNPLEQDLWNQAKEDR----IDPL---TLKEMLESIRETAEEPLSIQSLR 173
Y S QL P+ + D+ + DR I+PL + KE L IR +
Sbjct: 524 YVSTSKTQLVPSSKDGDVKDMLSRDRETSSIEPLPSDSPKEELRPIRPDTPPSKPVAFEE 583
Query: 174 FLQLELSEMEAFVNQHKS----------------NSIKRQTVITTMT-TLKKNLADEDAV 216
F + SE+ ++KS N+IKR+ +T +K+L ++
Sbjct: 584 FKNEQGSEINRIFKENKSILNERRKRASETTQHINAIKREIDVTKEALNFQKSLREKQGK 643
Query: 217 SCLVLGTENKELLVLDPEAFTILAKM 242
ENK L+++D E F ++ K+
Sbjct: 644 Y------ENKGLMIIDEEEFLLILKL 663
>gi|199560791 kinesin family member 9 isoform 2 [Homo sapiens]
Length = 790
Score = 32.3 bits (72), Expect = 1.3
Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 30/146 (20%)
Query: 121 YFKFSLPQLPPNPLEQDLWNQAKEDR----IDPL---TLKEMLESIRETAEEPLSIQSLR 173
Y S QL P+ + D+ + DR I+PL + KE L IR +
Sbjct: 524 YVSTSKTQLVPSSKDGDVKDMLSRDRETSSIEPLPSDSPKEELRPIRPDTPPSKPVAFEE 583
Query: 174 FLQLELSEMEAFVNQHKS----------------NSIKRQTVITTMT-TLKKNLADEDAV 216
F + SE+ ++KS N+IKR+ +T +K+L ++
Sbjct: 584 FKNEQGSEINRIFKENKSILNERRKRASETTQHINAIKREIDVTKEALNFQKSLREKQGK 643
Query: 217 SCLVLGTENKELLVLDPEAFTILAKM 242
ENK L+++D E F ++ K+
Sbjct: 644 Y------ENKGLMIIDEEEFLLILKL 663
>gi|116517224 coiled-coil domain containing 144B [Homo sapiens]
Length = 725
Score = 32.3 bits (72), Expect = 1.3
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 115 YKNLRPYFKFSLPQLPPNPLEQDLWNQAKEDRIDPLTLKEMLESIRETAEEPLSIQSLRF 174
YK+L+P + +L LPP+ DR + L E L+ + + ++ F
Sbjct: 466 YKSLKPKLE-NLSSLPPD-----------SDRTSEVYLHEELQQDMQKFKNEVNTLEEEF 513
Query: 175 LQLELS------EMEAFVNQHKSNSIKRQTVITTMTTLKKNLADEDAVSCLVLGTENKE 227
L L+ E+E + +H+SNS + +T TT+ D+D ++ + EN+E
Sbjct: 514 LALKKENVQLHKEVEEEMEKHRSNSTELSGTLTDGTTVGN---DDDGLNQQIPRKENEE 569
>gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Homo
sapiens]
Length = 1108
Score = 32.0 bits (71), Expect = 1.6
Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 23/185 (12%)
Query: 71 LKGPLVMTESPLPALPAAAATFLMEQHEPRTPALALASGPCVYVYKNLRPYFKFSL---- 126
L+ PL MT SP+ LP + T P L L+S +N + Y +
Sbjct: 661 LQSPLKMTNSPV--LPVGSTTNGSRSSTPSPSPLNLSSS------RNTQGYLYTAEGAQE 712
Query: 127 -PQLPPNPLEQDLWNQAKEDRIDPLTLKEMLE-SIRETAEEPLSIQSLRFLQLE---LSE 181
PQ+ PL+ L Q E ++ T+ + + S+ EEPL++ + + +++
Sbjct: 713 EPQV--EPLDLSLPKQQGE-LLERSTITSVYQNSVYSVQEEPLNLSCAKKEPQKDSCVTD 769
Query: 182 MEAFVNQHKSNSIKRQTVITTMTTLKKNL---ADEDAVSCLVLGTENKELLVLDPEAFTI 238
E VN ++ I T+T + AD+++V CL NK+ +++ A+T
Sbjct: 770 SEPVVNVIPPSANPINIAIPTVTAQLPTIVAIADQNSVPCLRALAANKQTILIPQVAYTY 829
Query: 239 LAKMS 243
+S
Sbjct: 830 STTVS 834
>gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Homo
sapiens]
Length = 1124
Score = 32.0 bits (71), Expect = 1.6
Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 23/185 (12%)
Query: 71 LKGPLVMTESPLPALPAAAATFLMEQHEPRTPALALASGPCVYVYKNLRPYFKFSL---- 126
L+ PL MT SP+ LP + T P L L+S +N + Y +
Sbjct: 677 LQSPLKMTNSPV--LPVGSTTNGSRSSTPSPSPLNLSSS------RNTQGYLYTAEGAQE 728
Query: 127 -PQLPPNPLEQDLWNQAKEDRIDPLTLKEMLE-SIRETAEEPLSIQSLRFLQLE---LSE 181
PQ+ PL+ L Q E ++ T+ + + S+ EEPL++ + + +++
Sbjct: 729 EPQV--EPLDLSLPKQQGE-LLERSTITSVYQNSVYSVQEEPLNLSCAKKEPQKDSCVTD 785
Query: 182 MEAFVNQHKSNSIKRQTVITTMTTLKKNL---ADEDAVSCLVLGTENKELLVLDPEAFTI 238
E VN ++ I T+T + AD+++V CL NK+ +++ A+T
Sbjct: 786 SEPVVNVIPPSANPINIAIPTVTAQLPTIVAIADQNSVPCLRALAANKQTILIPQVAYTY 845
Query: 239 LAKMS 243
+S
Sbjct: 846 STTVS 850
>gi|164663826 pregnancy specific beta-1-glycoprotein 11 isoform 2
[Homo sapiens]
Length = 213
Score = 32.0 bits (71), Expect = 1.6
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 15/96 (15%)
Query: 72 KGPLVMTESPLPAL------PAAAATFLMEQHEPRTP---------ALALASGPCVYVYK 116
KG L+ E+P P++ P A ++ P TP +L + + +
Sbjct: 16 KGLLLTVETPKPSISSSNLNPREAMETVILTCNPETPDASYLWWMNGQSLPMTHRMQLSE 75
Query: 117 NLRPYFKFSLPQLPPNPLEQDLWNQAKEDRIDPLTL 152
R F F + + P E ++WN R DP+TL
Sbjct: 76 TNRTLFLFGVTKYTAGPYECEIWNSGSASRSDPVTL 111
>gi|164663824 pregnancy specific beta-1-glycoprotein 11 isoform 2
[Homo sapiens]
Length = 213
Score = 32.0 bits (71), Expect = 1.6
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 15/96 (15%)
Query: 72 KGPLVMTESPLPAL------PAAAATFLMEQHEPRTP---------ALALASGPCVYVYK 116
KG L+ E+P P++ P A ++ P TP +L + + +
Sbjct: 16 KGLLLTVETPKPSISSSNLNPREAMETVILTCNPETPDASYLWWMNGQSLPMTHRMQLSE 75
Query: 117 NLRPYFKFSLPQLPPNPLEQDLWNQAKEDRIDPLTL 152
R F F + + P E ++WN R DP+TL
Sbjct: 76 TNRTLFLFGVTKYTAGPYECEIWNSGSASRSDPVTL 111
>gi|90669307 cyclin B3 isoform 3 [Homo sapiens]
Length = 1395
Score = 31.6 bits (70), Expect = 2.2
Identities = 19/83 (22%), Positives = 38/83 (45%)
Query: 131 PNPLEQDLWNQAKEDRIDPLTLKEMLESIRETAEEPLSIQSLRFLQLELSEMEAFVNQHK 190
P L++ + K R+ PL L+E+ + +PLSI+ + E E Q K
Sbjct: 382 PVILKEQCMTEGKRSRLKPLVLQEITSGEKSLIMKPLSIKEKPSTEKESFSQEPSALQKK 441
Query: 191 SNSIKRQTVITTMTTLKKNLADE 213
+ + +++ ++L K+ +E
Sbjct: 442 HTTQEEVSILKEPSSLLKSPTEE 464
>gi|46852174 kinesin family member 3A [Homo sapiens]
Length = 699
Score = 31.2 bits (69), Expect = 2.8
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 306 STQDSLHGFTHKGKKLWTVQMPAAILTMNLLEQHSRGLQAVMAGL 350
S Q+ G T K KK+WT+ M A +L ++H R ++ ++ +
Sbjct: 534 SLQEEAQGKTKKLKKVWTMLMAAKSEMADLQQEHQREIEGLLENI 578
>gi|33350932 cytoplasmic dynein 1 heavy chain 1 [Homo sapiens]
Length = 4646
Score = 31.2 bits (69), Expect = 2.8
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 15/135 (11%)
Query: 152 LKEMLESIRETAEEP----LSIQS---LRFLQLELSEMEAFVNQHKSNSIKRQTVITTMT 204
L E+L++ R +E L +Q LR QLE S ++A +N+ K + T+ITT+
Sbjct: 3713 LNEVLKAERPDVDEKRSDLLKLQGEFQLRLRQLEKSLLQA-LNEVKGRILDDDTIITTLE 3771
Query: 205 TLKKNLA------DEDAVSCLVLGTENKELLVLDPEAFTILAKM-SLPSVPVFLEVSGQF 257
LK+ A +E + + T +++ L L +I M SL + + S QF
Sbjct: 3772 NLKREAAEVTRKVEETDIVMQEVETVSQQYLPLSTACSSIYFTMESLKQIHFLYQYSLQF 3831
Query: 258 DVEFRLAAACRNGNI 272
++ N N+
Sbjct: 3832 FLDIYHNVLYENPNL 3846
>gi|223972704 hypothetical protein LOC284418 [Homo sapiens]
Length = 922
Score = 30.8 bits (68), Expect = 3.7
Identities = 23/78 (29%), Positives = 33/78 (42%)
Query: 72 KGPLVMTESPLPALPAAAATFLMEQHEPRTPALALASGPCVYVYKNLRPYFKFSLPQLPP 131
K LV S L A P A+AT +M R L+L G V V + + + P
Sbjct: 713 KSALVSLPSWLLATPQASATSMMASVPSRPGQLSLLEGKPVVVREQPESHTWVKEGKRPW 772
Query: 132 NPLEQDLWNQAKEDRIDP 149
+++ W + KE DP
Sbjct: 773 GEMKEQPWGEMKEPPWDP 790
>gi|55741661 hypothetical protein LOC57653 [Homo sapiens]
Length = 1646
Score = 30.8 bits (68), Expect = 3.7
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 20/125 (16%)
Query: 124 FSLPQLPPNPLEQDLWNQAKEDRIDPLTLK-EMLESIRETAEEPLSIQSLRFLQLELSEM 182
FSL QL Q+ +E R + T+ E L S +T +E LS Q +++L L
Sbjct: 1116 FSLQQL------QNKIKTCQESRGEKTTVTTEELLSFVQTWKEKLS-QRIQYLNCSLDR- 1167
Query: 183 EAFVNQHKSNSIKRQTVITTMTTLKKNLADEDAVSCLVLGTENKELLVLDPEAFTILAKM 242
+ ++ T T LK D D ++ E +L V+ PE+FT L+++
Sbjct: 1168 -----------VSMTELVFTNTILKDQEEDSDILTSSEALEEEAKLDVVTPESFTQLSRV 1216
Query: 243 SLPSV 247
P +
Sbjct: 1217 GKPLI 1221
>gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 899
Score = 30.4 bits (67), Expect = 4.8
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 7/43 (16%)
Query: 123 KFSLPQLPPNPLEQDLWNQAKEDRIDPLTLKEMLESIRETAEE 165
KF LPQ+ N L++++W Q +E L+E + IR+ E+
Sbjct: 259 KFLLPQVQTNTLQEEMWRQEEE-------LREQEKKIRKQEEK 294
>gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 828
Score = 30.4 bits (67), Expect = 4.8
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 7/43 (16%)
Query: 123 KFSLPQLPPNPLEQDLWNQAKEDRIDPLTLKEMLESIRETAEE 165
KF LPQ+ N L++++W Q +E L+E + IR+ E+
Sbjct: 221 KFLLPQVQTNTLQEEMWRQEEE-------LREQEKKIRKQEEK 256
>gi|187608615 tyrosine kinase 2 [Homo sapiens]
Length = 1187
Score = 30.0 bits (66), Expect = 6.3
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
Query: 79 ESPLPAL-PAAAATFLMEQH---EPRTPALALASGPCVYVYKNLRPYFKF---SLPQLPP 131
E+PL + P+ F QH EP P LA + C+ RP F+ L +L P
Sbjct: 812 EAPLQSRSPSEKEHFYQRQHRLPEPSCPQLATLTSQCLTYEPTQRPSFRTILRDLTRLQP 871
Query: 132 NPLEQDLWNQAKEDRIDPLTL-KEMLESIRETAE 164
+ L L DP K L+ IR+ E
Sbjct: 872 HNLADVLTVNPDSPASDPTVFHKRYLKKIRDLGE 905
>gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens]
Length = 983
Score = 29.6 bits (65), Expect = 8.2
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 152 LKEMLESIRETAEEPLSIQSLRFLQL--ELSEMEAFVNQHKSNSI---KRQTVITTMTTL 206
L ++ R AE+ LS ++ ++ EL++++ V+ K NS+ + VITT+ T
Sbjct: 687 LMQLTNVSRAKAEDALSEMKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQVITTLRTA 746
Query: 207 KKNLADEDAVSCLVLGTENKELLVLDPEAFTILAKMSLPSVP 248
K + ++ + L ++ E+ L+ + A M+ VP
Sbjct: 747 AKEMEEKISNLKEHLASKEVEVAKLEKQLLEEKAAMTDAMVP 788
>gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens]
Length = 972
Score = 29.6 bits (65), Expect = 8.2
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 152 LKEMLESIRETAEEPLSIQSLRFLQL--ELSEMEAFVNQHKSNSI---KRQTVITTMTTL 206
L ++ R AE+ LS ++ ++ EL++++ V+ K NS+ + VITT+ T
Sbjct: 676 LMQLTNVSRAKAEDALSEMKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQVITTLRTA 735
Query: 207 KKNLADEDAVSCLVLGTENKELLVLDPEAFTILAKMSLPSVP 248
K + ++ + L ++ E+ L+ + A M+ VP
Sbjct: 736 AKEMEEKISNLKEHLASKEVEVAKLEKQLLEEKAAMTDAMVP 777
>gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens]
Length = 951
Score = 29.6 bits (65), Expect = 8.2
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 152 LKEMLESIRETAEEPLSIQSLRFLQL--ELSEMEAFVNQHKSNSI---KRQTVITTMTTL 206
L ++ R AE+ LS ++ ++ EL++++ V+ K NS+ + VITT+ T
Sbjct: 655 LMQLTNVSRAKAEDALSEMKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQVITTLRTA 714
Query: 207 KKNLADEDAVSCLVLGTENKELLVLDPEAFTILAKMSLPSVP 248
K + ++ + L ++ E+ L+ + A M+ VP
Sbjct: 715 AKEMEEKISNLKEHLASKEVEVAKLEKQLLEEKAAMTDAMVP 756
>gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 29.6 bits (65), Expect = 8.2
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 152 LKEMLESIRETAEEPLSIQSLRFLQL--ELSEMEAFVNQHKSNSI---KRQTVITTMTTL 206
L ++ R AE+ LS ++ ++ EL++++ V+ K NS+ + VITT+ T
Sbjct: 684 LMQLTNVSRAKAEDALSEMKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQVITTLRTA 743
Query: 207 KKNLADEDAVSCLVLGTENKELLVLDPEAFTILAKMSLPSVP 248
K + ++ + L ++ E+ L+ + A M+ VP
Sbjct: 744 AKEMEEKISNLKEHLASKEVEVAKLEKQLLEEKAAMTDAMVP 785
>gi|224809470 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 29.6 bits (65), Expect = 8.2
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 152 LKEMLESIRETAEEPLSIQSLRFLQL--ELSEMEAFVNQHKSNSI---KRQTVITTMTTL 206
L ++ R AE+ LS ++ ++ EL++++ V+ K NS+ + VITT+ T
Sbjct: 684 LMQLTNVSRAKAEDALSEMKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQVITTLRTA 743
Query: 207 KKNLADEDAVSCLVLGTENKELLVLDPEAFTILAKMSLPSVP 248
K + ++ + L ++ E+ L+ + A M+ VP
Sbjct: 744 AKEMEEKISNLKEHLASKEVEVAKLEKQLLEEKAAMTDAMVP 785
>gi|224809468 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 29.6 bits (65), Expect = 8.2
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 152 LKEMLESIRETAEEPLSIQSLRFLQL--ELSEMEAFVNQHKSNSI---KRQTVITTMTTL 206
L ++ R AE+ LS ++ ++ EL++++ V+ K NS+ + VITT+ T
Sbjct: 684 LMQLTNVSRAKAEDALSEMKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQVITTLRTA 743
Query: 207 KKNLADEDAVSCLVLGTENKELLVLDPEAFTILAKMSLPSVP 248
K + ++ + L ++ E+ L+ + A M+ VP
Sbjct: 744 AKEMEEKISNLKEHLASKEVEVAKLEKQLLEEKAAMTDAMVP 785
>gi|188528696 erlectin isoform 2 [Homo sapiens]
Length = 457
Score = 29.6 bits (65), Expect = 8.2
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 149 PLTLKEMLESIRETAEEPLSIQSLRFLQ--LELSEMEAFVNQHKSNSIKRQTVITTMTTL 206
PLTL+++ E EE L + R + L+ ++ E F HKS +I Q V+T TT
Sbjct: 271 PLTLRQL-----EQQEEILRVPFRRNKEEDLQSTKEERFPAIHKSIAIGSQPVLTVGTTH 325
Query: 207 KKNLADEDAVSCLVLGT 223
L D+ + + G+
Sbjct: 326 ISKLTDDQLIKEFLSGS 342
>gi|20070264 erlectin isoform 1 [Homo sapiens]
Length = 483
Score = 29.6 bits (65), Expect = 8.2
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 149 PLTLKEMLESIRETAEEPLSIQSLRFLQ--LELSEMEAFVNQHKSNSIKRQTVITTMTTL 206
PLTL+++ E EE L + R + L+ ++ E F HKS +I Q V+T TT
Sbjct: 271 PLTLRQL-----EQQEEILRVPFRRNKEEDLQSTKEERFPAIHKSIAIGSQPVLTVGTTH 325
Query: 207 KKNLADEDAVSCLVLGT 223
L D+ + + G+
Sbjct: 326 ISKLTDDQLIKEFLSGS 342
>gi|13876384 cell division cycle associated 3 [Homo sapiens]
Length = 268
Score = 29.6 bits (65), Expect = 8.2
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 64 QQPRLKVLKGPLVMTESPLPALPAAAATFLM---EQHEPRTPALALASGPCVY------- 113
+ P +L+ P+ + SP P LPA + + +PR+P L +A P
Sbjct: 28 RSPSAGILRTPIQVESSPQPGLPAGEQLEGLKHAQDSDPRSPTLGIARTPMKTSSGDPPS 87
Query: 114 -VYKNLRPYFKF--SLPQLPPNPL 134
+ K L F+ S LPP P+
Sbjct: 88 PLVKQLSEVFETEDSKSNLPPEPV 111
>gi|164663836 pregnancy specific beta-1-glycoprotein 11 isoform 1
[Homo sapiens]
Length = 335
Score = 29.6 bits (65), Expect = 8.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 119 RPYFKFSLPQLPPNPLEQDLWNQAKEDRIDPLTL 152
R F F + + P E ++WN R DP+TL
Sbjct: 200 RTLFLFGVTKYTAGPYECEIWNSGSASRSDPVTL 233
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,808,475
Number of Sequences: 37866
Number of extensions: 1056492
Number of successful extensions: 2752
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2735
Number of HSP's gapped (non-prelim): 38
length of query: 593
length of database: 18,247,518
effective HSP length: 108
effective length of query: 485
effective length of database: 14,157,990
effective search space: 6866625150
effective search space used: 6866625150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.