Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C2orf30 Sequence: fasta or formatted (483aa) NCBI GI: 20070264
Description:

erlectin isoform 1

Referenced in:

Bone and Related Tissues

Other entries for this name:
alt prot [457aa] erlectin isoform 2
alt prot [429aa] erlectin isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.9         14           1
 C cysteine            3.1         15           1
 D aspartate           3.9         19           2
 E glutamate           9.9         48           4
 F phenylalanine       2.7         13           1
 G glycine             7.5         36           4
 H histidine           3.7         18           1
 I isoleucine          5.2         25           1
 K lysine              7.2         35           2
 L leucine             8.7         42           2
 M methionine          1.7          8           1
 N asparagine          3.5         17           1
 P proline             6.2         30           1
 Q glutamine           3.9         19           2
 R arginine            4.1         20           2
 S serine              6.8         33           2
 T threonine           6.2         30           2
 V valine              6.6         32           3
 W tryptophan          1.2          6           2
 Y tyrosine            4.8         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   erlectin isoform 1 
C2orf30               0.931   erlectin isoform 2 
C2orf30               0.596   erlectin isoform 3 
OS9                   0.072   osteosarcoma amplified 9 isoform 4 precursor 
OS9                   0.072   osteosarcoma amplified 9 isoform 3 precursor 
OS9                   0.072   osteosarcoma amplified 9 isoform 2 precursor 
OS9                   0.072   osteosarcoma amplified 9 isoform 1 precursor 
GNPTG                 0.018   N-acetylglucosamine-1-phosphotransferase, gamma subu...
LOC643677             0.010   hypothetical protein LOC643677 
LOC643677             0.010   PREDICTED: hypothetical protein LOC643677 
LOC643677             0.010   PREDICTED: hypothetical protein LOC643677 
LOC643677             0.010   PREDICTED: hypothetical protein LOC643677 
PRKCSH                0.008   protein kinase C substrate 80K-H isoform 2 
PRKCSH                0.008   protein kinase C substrate 80K-H isoform 1 
ZNF462                0.008   zinc finger protein 462 
PLCD4                 0.007   phospholipase C, delta 4 
LOC100292909          0.006   PREDICTED: hypothetical protein 
NBPF6                 0.005   neuroblastoma breakpoint family, member 6 isoform 2...
NBPF6                 0.005   neuroblastoma breakpoint family, member 6 isoform 1...
NBPF4                 0.005   neuroblastoma breakpoint family, member 4 
PDE9A                 0.005   phosphodiesterase 9A isoform h 
BBS1                  0.005   Bardet-Biedl syndrome 1 
UPF3B                 0.005   UPF3 regulator of nonsense transcripts homolog B iso...
DCHS1                 0.005   dachsous 1 precursor 
HTT                   0.004   huntingtin 
ZFHX4                 0.004   zinc finger homeodomain 4 
NOL10                 0.004   nucleolar protein 10 
CSPP1                 0.004   centrosome spindle pole associated protein 1 isofor...
CSPP1                 0.004   centrosome spindle pole associated protein 1 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press