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Search of human proteins with 28372555
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28372555 sodium channel, voltage-gated, type IV, beta
isoform 1 precursor [Homo sapiens]
(228 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28372555 sodium channel, voltage-gated, type IV, beta isoform... 454 e-128
gi|215272334 sodium channel, voltage-gated, type IV, beta isofor... 232 2e-61
gi|215272332 sodium channel, voltage-gated, type IV, beta isofor... 141 5e-34
gi|4759066 sodium channel, voltage-gated, type II, beta [Homo sa... 82 3e-16
gi|4505243 myelin protein zero [Homo sapiens] 61 9e-10
gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens] 54 8e-08
gi|21536337 myelin protein zero-like 2 precursor [Homo sapiens] 50 1e-06
gi|5032247 myelin protein zero-like 2 precursor [Homo sapiens] 50 1e-06
gi|46358426 myelin protein zero-like 1 isoform b [Homo sapiens] 50 2e-06
gi|153792329 microfibrillar-associated protein 3-like isoform 1 ... 43 3e-04
gi|171460997 CD226 molecule precursor [Homo sapiens] 41 7e-04
gi|63054855 erythroblast membrane-associated protein precursor [... 41 0.001
gi|19923536 erythroblast membrane-associated protein precursor [... 41 0.001
gi|226437599 V-set and transmembrane domain containing 2B [Homo ... 40 0.001
gi|239757226 PREDICTED: V-set and transmembrane domain containin... 40 0.001
gi|239751732 PREDICTED: V-set and transmembrane domain containin... 40 0.001
gi|239746233 PREDICTED: V-set and transmembrane domain containin... 40 0.001
gi|62865876 immunoglobulin superfamily, member 11 isoform b [Hom... 40 0.002
gi|38093645 myelin protein zero-like 3 [Homo sapiens] 40 0.002
gi|148664224 adhesion molecule, interacts with CXADR antigen 1 i... 39 0.004
gi|148664207 adhesion molecule, interacts with CXADR antigen 1 i... 39 0.004
gi|62865874 immunoglobulin superfamily, member 11 isoform a [Hom... 38 0.008
gi|21686977 cell adhesion molecule 4 [Homo sapiens] 37 0.011
gi|13186249 fibroblast growth factor receptor 1 isoform 9 precur... 37 0.014
gi|13186236 fibroblast growth factor receptor 1 isoform 4 precur... 37 0.014
gi|13186234 fibroblast growth factor receptor 1 isoform 3 precur... 37 0.014
gi|13186251 fibroblast growth factor receptor 1 isoform 2 precur... 37 0.014
gi|105990522 fibroblast growth factor receptor 1 isoform 1 precu... 37 0.014
gi|166197658 butyrophilin, subfamily 1, member A1 [Homo sapiens] 37 0.014
gi|222144233 fibroblast growth factor receptor 2 isoform 4 precu... 37 0.018
>gi|28372555 sodium channel, voltage-gated, type IV, beta isoform 1
precursor [Homo sapiens]
Length = 228
Score = 454 bits (1168), Expect = e-128
Identities = 228/228 (100%), Positives = 228/228 (100%)
Query: 1 MPGAGDGGKAPARWLGTGLLGLFLLPVTLSLEVSVGKATDIYAVNGTEILLPCTFSSCFG 60
MPGAGDGGKAPARWLGTGLLGLFLLPVTLSLEVSVGKATDIYAVNGTEILLPCTFSSCFG
Sbjct: 1 MPGAGDGGKAPARWLGTGLLGLFLLPVTLSLEVSVGKATDIYAVNGTEILLPCTFSSCFG 60
Query: 61 FEDLHFRWTYNSSDAFKILIEGTVKNEKSDPKVTLKDDDRITLVGSTKEKMNNISIVLRD 120
FEDLHFRWTYNSSDAFKILIEGTVKNEKSDPKVTLKDDDRITLVGSTKEKMNNISIVLRD
Sbjct: 61 FEDLHFRWTYNSSDAFKILIEGTVKNEKSDPKVTLKDDDRITLVGSTKEKMNNISIVLRD 120
Query: 121 LEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGGVIGLLILI 180
LEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGGVIGLLILI
Sbjct: 121 LEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGGVIGLLILI 180
Query: 181 LLIKKLIIFILKKTREKKKECLVSSSGNDNTENGLPGSKAEEKPPSKV 228
LLIKKLIIFILKKTREKKKECLVSSSGNDNTENGLPGSKAEEKPPSKV
Sbjct: 181 LLIKKLIIFILKKTREKKKECLVSSSGNDNTENGLPGSKAEEKPPSKV 228
>gi|215272334 sodium channel, voltage-gated, type IV, beta isoform 3
[Homo sapiens]
Length = 118
Score = 232 bits (592), Expect = 2e-61
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 111 MNNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVV 170
MNNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVV
Sbjct: 1 MNNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVV 60
Query: 171 GGVIGLLILILLIKKLIIFILKKTREKKKECLVSSSGNDNTENGLPGSKAEEKPPSKV 228
GGVIGLLILILLIKKLIIFILKKTREKKKECLVSSSGNDNTENGLPGSKAEEKPPSKV
Sbjct: 61 GGVIGLLILILLIKKLIIFILKKTREKKKECLVSSSGNDNTENGLPGSKAEEKPPSKV 118
>gi|215272332 sodium channel, voltage-gated, type IV, beta isoform 2
[Homo sapiens]
Length = 94
Score = 141 bits (355), Expect = 5e-34
Identities = 73/74 (98%), Positives = 74/74 (100%)
Query: 155 LEEVDNTVTLIILAVVGGVIGLLILILLIKKLIIFILKKTREKKKECLVSSSGNDNTENG 214
+EEVDNTVTLIILAVVGGVIGLLILILLIKKLIIFILKKTREKKKECLVSSSGNDNTENG
Sbjct: 21 VEEVDNTVTLIILAVVGGVIGLLILILLIKKLIIFILKKTREKKKECLVSSSGNDNTENG 80
Query: 215 LPGSKAEEKPPSKV 228
LPGSKAEEKPPSKV
Sbjct: 81 LPGSKAEEKPPSKV 94
Score = 47.4 bits (111), Expect = 1e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Query: 1 MPGAGDGGKAPARWLGTGLL 20
MPGAGDGGKAPARWLGTGLL
Sbjct: 1 MPGAGDGGKAPARWLGTGLL 20
>gi|4759066 sodium channel, voltage-gated, type II, beta [Homo
sapiens]
Length = 215
Score = 82.4 bits (202), Expect = 3e-16
Identities = 63/206 (30%), Positives = 108/206 (52%), Gaps = 26/206 (12%)
Query: 17 TGLLGLF-LLPVTLSLEVSVGKATDIYAVNGTEILLPCTFSSCFGFEDLHF--RWTY--- 70
TGL F L+P S+EV+V ++ +NG++ LPCTF+SC+ F WTY
Sbjct: 15 TGLSLFFSLVPPGRSMEVTVPATLNV--LNGSDARLPCTFNSCYTVNHKQFSLNWTYQEC 72
Query: 71 -NSSDAFKILIEGTVKNEKSDPKVTLKDDDRITLVGSTKEKMNNISIVLRDLEFSDTGKY 129
N S+ + + N K + + DR+ G+ + ++S++LR+++ D G Y
Sbjct: 73 NNCSEEMFLQFRMKIINLKLE-----RFQDRVEFSGNPSKY--DVSVMLRNVQPEDEGIY 125
Query: 130 TCHVKNPKENNLQHHATIFLQV-VDRLEEVDNTVTLIILAVVGGVIGLLILILLIKKLII 188
C++ NP + + + H I LQV ++ E D+TV +I+ A VGG + ++IL+L++ K +
Sbjct: 126 NCYIMNPPDRH-RGHGKIHLQVLMEEPPERDSTVAVIVGASVGGFLAVVILVLMVVKCV- 183
Query: 189 FILKKTREKKKECLVSSSGNDNTENG 214
+KKE +S+ E G
Sbjct: 184 -------RRKKEQKLSTDDLKTEEEG 202
>gi|4505243 myelin protein zero [Homo sapiens]
Length = 258
Score = 60.8 bits (146), Expect = 9e-10
Identities = 57/193 (29%), Positives = 92/193 (47%), Gaps = 31/193 (16%)
Query: 2 PGAGDGGKAPARWLGTGLLGLFLLPVTLSLEVSVGKATD--IYAVNGTEILLPCTF-SSC 58
PGA +P L L + LS ++ TD ++ G+ + L C+F SS
Sbjct: 13 PGAPSSSPSPI------LAVLLFSSLVLSPAQAIVVYTDREVHGAVGSRVTLHCSFWSSE 66
Query: 59 FGFEDLHFRWTYNSS---DAFKILIEGTVKNEKSDPKV----TLKDDDRITLVGSTKEKM 111
+ +D+ F W Y DA I K P + T K+ RI VG + K
Sbjct: 67 WVSDDISFTWRYQPEGGRDAISIF-----HYAKGQPYIDEVGTFKE--RIQWVGDPRWKD 119
Query: 112 NNISIVLRDLEFSDTGKYTCHVKNPKE-NNLQHHATIFLQVVDRLEEVDNTVTLIILAVV 170
SIV+ +L++SD G +TC VKNP + T+++ E+V +++ AV+
Sbjct: 120 G--SIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV-----FEKVPTRYGVVLGAVI 172
Query: 171 GGVIGLLILILLI 183
GGV+G+++L+LL+
Sbjct: 173 GGVLGVVLLLLLL 185
>gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens]
Length = 269
Score = 54.3 bits (129), Expect = 8e-08
Identities = 68/235 (28%), Positives = 106/235 (45%), Gaps = 30/235 (12%)
Query: 3 GAGDGGKAP--ARWLGTGL---LGLFLLPVTLSLEVSVGKATDIYAVNGTEILLPCTFSS 57
GAG AP RWL + L LGL V+ +LEV K +I+ NGT+ L C F S
Sbjct: 6 GAGAVIAAPDSRRWLWSVLAAALGLLTAGVS-ALEVYTPK--EIFVANGTQGKLTCKFKS 62
Query: 58 CFGFEDL-HFRWTYNSSDA-----FKILIEGTVKNEKSDPKVTLKDDDRITLVGSTKEKM 111
L W++ A F +G V P DRI+ G +K
Sbjct: 63 TSTTGGLTSVSWSFQPEGADTTVSFFHYSQGQVYLGNYPPF-----KDRISWAGDLDKK- 116
Query: 112 NNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVG 171
+ SI + +++F G Y C VKNP + +Q I L VV++ +N + VVG
Sbjct: 117 -DASINIENMQFIHNGTYICDVKNPPDIVVQ-PGHIRLYVVEK----ENLPVFPVWVVVG 170
Query: 172 GVIGLLILILLIKKLIIFILKKTREKKKECLVSSSGNDNTENGLPGSKAEEKPPS 226
V +++ + L+ +I+ +L + + K++ +G +E+ P +A K PS
Sbjct: 171 IVTAVVLGLTLLISMILAVLYRRKNSKRD----YTGCSTSESLSPVKQAPRKSPS 221
>gi|21536337 myelin protein zero-like 2 precursor [Homo sapiens]
Length = 215
Score = 50.4 bits (119), Expect = 1e-06
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 14/179 (7%)
Query: 19 LLGLFLLPVTLSLEVSVGKATDIYAVNGTEILLPCTFSSCFGFED-LHFRWTYNSSDAFK 77
LLG+ L + V + + + AVNGT+ L CTFSS D L W + D
Sbjct: 13 LLGIQLTALWPIAAVEIYTSRVLEAVNGTDARLKCTFSSFAPVGDALTVTWNFRPLDGGP 72
Query: 78 ILIEGTVKNEKSDP--KVTLKDDDRITLVGSTKEKMNNISIVLRDLEFSDTGKYTCHVKN 135
E V DP ++ + DR++ G+ + + SI+L L+F D G YTC VKN
Sbjct: 73 ---EQFVFYYHIDPFQPMSGRFKDRVSWDGNPERY--DASILLWKLQFDDNGTYTCQVKN 127
Query: 136 PKE-NNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGGVIGLLILILLIKKLIIFILKK 193
P + + + + + R E+ + +G L+I+I+++ L KK
Sbjct: 128 PPDVDGVIGEIRLSVVHTVRFSEIH-----FLALAIGSACALMIIIVIVVVLFQHYRKK 181
>gi|5032247 myelin protein zero-like 2 precursor [Homo sapiens]
Length = 215
Score = 50.4 bits (119), Expect = 1e-06
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 14/179 (7%)
Query: 19 LLGLFLLPVTLSLEVSVGKATDIYAVNGTEILLPCTFSSCFGFED-LHFRWTYNSSDAFK 77
LLG+ L + V + + + AVNGT+ L CTFSS D L W + D
Sbjct: 13 LLGIQLTALWPIAAVEIYTSRVLEAVNGTDARLKCTFSSFAPVGDALTVTWNFRPLDGGP 72
Query: 78 ILIEGTVKNEKSDP--KVTLKDDDRITLVGSTKEKMNNISIVLRDLEFSDTGKYTCHVKN 135
E V DP ++ + DR++ G+ + + SI+L L+F D G YTC VKN
Sbjct: 73 ---EQFVFYYHIDPFQPMSGRFKDRVSWDGNPERY--DASILLWKLQFDDNGTYTCQVKN 127
Query: 136 PKE-NNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGGVIGLLILILLIKKLIIFILKK 193
P + + + + + R E+ + +G L+I+I+++ L KK
Sbjct: 128 PPDVDGVIGEIRLSVVHTVRFSEIH-----FLALAIGSACALMIIIVIVVVLFQHYRKK 181
>gi|46358426 myelin protein zero-like 1 isoform b [Homo sapiens]
Length = 209
Score = 50.1 bits (118), Expect = 2e-06
Identities = 61/209 (29%), Positives = 95/209 (45%), Gaps = 26/209 (12%)
Query: 3 GAGDGGKAP--ARWLGTGL---LGLFLLPVTLSLEVSVGKATDIYAVNGTEILLPCTFSS 57
GAG AP RWL + L LGL V+ +LEV K +I+ NGT+ L C F S
Sbjct: 6 GAGAVIAAPDSRRWLWSVLAAALGLLTAGVS-ALEVYTPK--EIFVANGTQGKLTCKFKS 62
Query: 58 CFGFEDL-HFRWTYNSSDA-----FKILIEGTVKNEKSDPKVTLKDDDRITLVGSTKEKM 111
L W++ A F +G V P DRI+ G +K
Sbjct: 63 TSTTGGLTSVSWSFQPEGADTTVSFFHYSQGQVYLGNYPPF-----KDRISWAGDLDKK- 116
Query: 112 NNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVG 171
+ SI + +++F G Y C VKNP + +Q I L VV++ +N + VVG
Sbjct: 117 -DASINIENMQFIHNGTYICDVKNPPDIVVQ-PGHIRLYVVEK----ENLPVFPVWVVVG 170
Query: 172 GVIGLLILILLIKKLIIFILKKTREKKKE 200
V +++ + L+ +I+ +L + + K++
Sbjct: 171 IVTAVVLGLTLLISMILAVLYRRKNSKRD 199
>gi|153792329 microfibrillar-associated protein 3-like isoform 1
[Homo sapiens]
Length = 409
Score = 42.7 bits (99), Expect = 3e-04
Identities = 47/176 (26%), Positives = 71/176 (40%), Gaps = 43/176 (24%)
Query: 30 SLEVSVGKATDIYAVNGTEILLPCTFSSCFGFEDLHFRWTYNSSDAFKILIEGTVKNEKS 89
S+ V + + I G L+ C S +G D F+W YNS K+L E + E+
Sbjct: 45 SVPVIIARTDHIIVKEGNSALINC---SVYGIPDPQFKW-YNSIG--KLLKEEEDEKERG 98
Query: 90 DPKVTLKDDDRITLVGSTKEKMNNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFL 149
K + D L+ TK + FSD GKYTC N
Sbjct: 99 GGKWQMHDSG---LLNITK------------VSFSDRGKYTCVASN-------------- 129
Query: 150 QVVDRLEEVDNTVTLIILAVVGGVIGLLILILLIKKLIIFILKKTREKKKECLVSS 205
V+NTVTL ++ G + +++ L+ I+ +L TR C++SS
Sbjct: 130 ----IYGTVNNTVTLRVIFTSGDMGVYYMVVCLVAFTIVMVLNITR----LCMMSS 177
>gi|171460997 CD226 molecule precursor [Homo sapiens]
Length = 336
Score = 41.2 bits (95), Expect = 7e-04
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 116 IVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGGVIG 175
IV+ D+ SD+G Y C+++ N T +++ + DN TL V GG +
Sbjct: 207 IVIPDVTVSDSGLYRCYLQASAGEN----ETFVMRLTVAEGKTDNQYTLF---VAGGTVL 259
Query: 176 LLILILLIKKLIIFILKKTREKKKECLVSSS 206
LL+ ++ I +I+ L + R +++ L + S
Sbjct: 260 LLLFVISITTIIVIFLNRRRRRERRDLFTES 290
>gi|63054855 erythroblast membrane-associated protein precursor
[Homo sapiens]
Length = 475
Score = 40.8 bits (94), Expect = 0.001
Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 22/192 (11%)
Query: 14 WLGTGLLGLFLLPVTLSLEVSVGKATDIYA--VNGTEILLPCTFSSCFGFEDLHFRWTYN 71
WL L+ L L +++ + G A + + GT LL C S G RW +
Sbjct: 10 WLSGCLIPLVFLRLSVHVSGHAGDAGKFHVALLGGTAELL-CPLSLWPGTVPKEVRWLRS 68
Query: 72 S----SDAFKILIEGTVKNEKSDPKVTLKDDDRITLVGSTKEKMNNISIVLRDLEFSDTG 127
S A I +G ++E P+ R LV +E ++++ + D+ D G
Sbjct: 69 PFPQRSQAVHIFRDGKDQDEDLMPEYK----GRTVLVRDAQE--GSVTLQILDVRLEDQG 122
Query: 128 KYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGGVIGLLILILLIKKLI 187
Y C ++ NL T+ LQV + +L AV VI L +L+LLI +
Sbjct: 123 SYRCLIQ---VGNLSKEDTVILQVA-----APSVGSLSPSAVALAVI-LPVLVLLIMVCL 173
Query: 188 IFILKKTREKKK 199
I K+ R K+K
Sbjct: 174 CLIWKQRRAKEK 185
>gi|19923536 erythroblast membrane-associated protein precursor
[Homo sapiens]
Length = 475
Score = 40.8 bits (94), Expect = 0.001
Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 22/192 (11%)
Query: 14 WLGTGLLGLFLLPVTLSLEVSVGKATDIYA--VNGTEILLPCTFSSCFGFEDLHFRWTYN 71
WL L+ L L +++ + G A + + GT LL C S G RW +
Sbjct: 10 WLSGCLIPLVFLRLSVHVSGHAGDAGKFHVALLGGTAELL-CPLSLWPGTVPKEVRWLRS 68
Query: 72 S----SDAFKILIEGTVKNEKSDPKVTLKDDDRITLVGSTKEKMNNISIVLRDLEFSDTG 127
S A I +G ++E P+ R LV +E ++++ + D+ D G
Sbjct: 69 PFPQRSQAVHIFRDGKDQDEDLMPEYK----GRTVLVRDAQE--GSVTLQILDVRLEDQG 122
Query: 128 KYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGGVIGLLILILLIKKLI 187
Y C ++ NL T+ LQV + +L AV VI L +L+LLI +
Sbjct: 123 SYRCLIQ---VGNLSKEDTVILQVA-----APSVGSLSPSAVALAVI-LPVLVLLIMVCL 173
Query: 188 IFILKKTREKKK 199
I K+ R K+K
Sbjct: 174 CLIWKQRRAKEK 185
>gi|226437599 V-set and transmembrane domain containing 2B [Homo
sapiens]
Length = 285
Score = 40.4 bits (93), Expect = 0.001
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Query: 40 DIYAVNGTEILLPCTFSSCFGFE-DLHFRWTYNSSDAFKILIEGTVKNEKSDPKVTLKDD 98
D+ G +I +PC F + L +W Y ++L E + + KVT KD
Sbjct: 36 DVTVREGDDIEMPCAFRASGATSYSLEIQWWYLKEPPRELLHELALSVPGARSKVTNKDA 95
Query: 99 DRITLVGSTKEKMNNISIVLR--DLEFSDTGKYTCHVKNPKENNLQHH-ATIFLQVVDR 154
+I+ V + + N+IS LR + D G Y C V + +++ Q H A L+V+ R
Sbjct: 96 TKISTV---RVQGNDISHRLRLSAVRLQDEGVYECRVSDYSDDDTQEHKAQAMLRVLSR 151
>gi|239757226 PREDICTED: V-set and transmembrane domain containing
2B [Homo sapiens]
Length = 285
Score = 40.4 bits (93), Expect = 0.001
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Query: 40 DIYAVNGTEILLPCTFSSCFGFE-DLHFRWTYNSSDAFKILIEGTVKNEKSDPKVTLKDD 98
D+ G +I +PC F + L +W Y ++L E + + KVT KD
Sbjct: 36 DVTVREGDDIEMPCAFRASGATSYSLEIQWWYLKEPPRELLHELALSVPGARSKVTNKDA 95
Query: 99 DRITLVGSTKEKMNNISIVLR--DLEFSDTGKYTCHVKNPKENNLQHH-ATIFLQVVDR 154
+I+ V + + N+IS LR + D G Y C V + +++ Q H A L+V+ R
Sbjct: 96 TKISTV---RVQGNDISHRLRLSAVRLQDEGVYECRVSDYSDDDTQEHKAQAMLRVLSR 151
>gi|239751732 PREDICTED: V-set and transmembrane domain containing
2B [Homo sapiens]
Length = 285
Score = 40.4 bits (93), Expect = 0.001
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Query: 40 DIYAVNGTEILLPCTFSSCFGFE-DLHFRWTYNSSDAFKILIEGTVKNEKSDPKVTLKDD 98
D+ G +I +PC F + L +W Y ++L E + + KVT KD
Sbjct: 36 DVTVREGDDIEMPCAFRASGATSYSLEIQWWYLKEPPRELLHELALSVPGARSKVTNKDA 95
Query: 99 DRITLVGSTKEKMNNISIVLR--DLEFSDTGKYTCHVKNPKENNLQHH-ATIFLQVVDR 154
+I+ V + + N+IS LR + D G Y C V + +++ Q H A L+V+ R
Sbjct: 96 TKISTV---RVQGNDISHRLRLSAVRLQDEGVYECRVSDYSDDDTQEHKAQAMLRVLSR 151
>gi|239746233 PREDICTED: V-set and transmembrane domain containing
2B [Homo sapiens]
Length = 285
Score = 40.4 bits (93), Expect = 0.001
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Query: 40 DIYAVNGTEILLPCTFSSCFGFE-DLHFRWTYNSSDAFKILIEGTVKNEKSDPKVTLKDD 98
D+ G +I +PC F + L +W Y ++L E + + KVT KD
Sbjct: 36 DVTVREGDDIEMPCAFRASGATSYSLEIQWWYLKEPPRELLHELALSVPGARSKVTNKDA 95
Query: 99 DRITLVGSTKEKMNNISIVLR--DLEFSDTGKYTCHVKNPKENNLQHH-ATIFLQVVDR 154
+I+ V + + N+IS LR + D G Y C V + +++ Q H A L+V+ R
Sbjct: 96 TKISTV---RVQGNDISHRLRLSAVRLQDEGVYECRVSDYSDDDTQEHKAQAMLRVLSR 151
>gi|62865876 immunoglobulin superfamily, member 11 isoform b [Homo
sapiens]
Length = 431
Score = 39.7 bits (91), Expect = 0.002
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 11/121 (9%)
Query: 19 LLGLFLLPVTLSLEVSVGKATDIYAVNGTEILLPCTFSSCFGFEDLHFRWTY----NSSD 74
LL L L V SLEVS + I G +LPCTF++ +L+ W N++
Sbjct: 11 LLLLSLHGVAASLEVSESPGS-IQVARGQPAVLPCTFTTSAALINLNVIWMVTPLSNANQ 69
Query: 75 AFKILIEGTVKNEKSDPKVTLKDDDRITLVGSTKEKMNNISIVLRDLEFSDTGKYTCHVK 134
++++ + P+ R+ G+ N+SI + + + SDTG Y C V
Sbjct: 70 PEQVILYQGGQMFDGAPRF----HGRVGFTGTMPA--TNVSIFINNTQLSDTGTYQCLVN 123
Query: 135 N 135
N
Sbjct: 124 N 124
>gi|38093645 myelin protein zero-like 3 [Homo sapiens]
Length = 235
Score = 39.7 bits (91), Expect = 0.002
Identities = 49/200 (24%), Positives = 87/200 (43%), Gaps = 12/200 (6%)
Query: 19 LLG-LFLLPVTLSLEVSVGKATDIYAVNGTEILLPCTFSSCFGFED-LHFRWTYNS-SDA 75
LLG LF V + + + + G +I L CTF S D L WTY S +
Sbjct: 17 LLGVLFFQGVYIVFSLEIRADAHVRGYVGEKIKLKCTFKSTSDVTDKLTIDWTYRPPSSS 76
Query: 76 FKILIEGTVKNEKSDPKVTLKDDDRITLVGSTKEKMNNISIVLRDLEFSDTGKYTCHVKN 135
+ I + T +D RI+ VG+ + + SI + + D G ++C VKN
Sbjct: 77 HTVSIFHYQSFQYPTTAGTFRD--RISWVGNVYK--GDASISISNPTIKDNGTFSCAVKN 132
Query: 136 PKENNLQHHATIF-LQVVDR--LEEVDNTVTLIILAVVGGVIGLLILILLIKKLIIFILK 192
P + + H+ + L V +R + + L IL V + + +L++ + + + K
Sbjct: 133 PPD--VHHNIPMTELTVTERGFGTMLSSVALLSILVFVPSAVVVALLLVRMGRKAAGLKK 190
Query: 193 KTREKKKECLVSSSGNDNTE 212
++R K+ + S + + E
Sbjct: 191 RSRSGYKKSSIEVSDDTDQE 210
>gi|148664224 adhesion molecule, interacts with CXADR antigen 1
isoform 2 [Homo sapiens]
Length = 384
Score = 38.9 bits (89), Expect = 0.004
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 14/123 (11%)
Query: 99 DRITLVGSTKEKMNNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEV 158
+R+ LVG N+ SI+L+ + SD G YTC + NL TI L V
Sbjct: 194 NRVNLVGDIFR--NDGSIMLQGVRESDGGNYTCSI---HLGNLVFKKTIVLHVSPEEPRT 248
Query: 159 DNTVTLIILAVVGG-----VIGLLILILLIKKLIIFILKKTREKKKE----CLVSSSGND 209
T + V+GG ++G++ +L+ ++I I+KKT K LV ++
Sbjct: 249 LVTPAALRPLVLGGNQLVIIVGIVCATILLLPVLILIVKKTCGNKSSVNSTVLVKNTKKT 308
Query: 210 NTE 212
N E
Sbjct: 309 NPE 311
>gi|148664207 adhesion molecule, interacts with CXADR antigen 1
isoform 1 [Homo sapiens]
Length = 394
Score = 38.9 bits (89), Expect = 0.004
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 14/123 (11%)
Query: 99 DRITLVGSTKEKMNNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEV 158
+R+ LVG N+ SI+L+ + SD G YTC + NL TI L V
Sbjct: 204 NRVNLVGDIFR--NDGSIMLQGVRESDGGNYTCSI---HLGNLVFKKTIVLHVSPEEPRT 258
Query: 159 DNTVTLIILAVVGG-----VIGLLILILLIKKLIIFILKKTREKKKE----CLVSSSGND 209
T + V+GG ++G++ +L+ ++I I+KKT K LV ++
Sbjct: 259 LVTPAALRPLVLGGNQLVIIVGIVCATILLLPVLILIVKKTCGNKSSVNSTVLVKNTKKT 318
Query: 210 NTE 212
N E
Sbjct: 319 NPE 321
Score = 30.4 bits (67), Expect = 1.3
Identities = 36/160 (22%), Positives = 68/160 (42%), Gaps = 18/160 (11%)
Query: 20 LGLFLLPVTLSLEVSVGKAT----DIYAVNGTEILLPCTFSSCFGFEDLHFRWTYNSSDA 75
L L LLPV L + + ++ G L+ C F S WT + +
Sbjct: 5 LKLILLPVLLDYSLGLNDLNVSPPELTVHVGDSALMGCVFQSTEDKCIFKIDWTLSPGEH 64
Query: 76 FKILIEGTVKNEKSDPKVTL-KDDDRITLVGSTKEKMNNISIVLRDLEFSDTGKYTCHVK 134
K + V S+ V + + +R+ L+G N+ S++L+D++ +D G Y C ++
Sbjct: 65 AK---DEYVLYYYSNLSVPIGRFQNRVHLMGDIL--CNDGSLLLQDVQEADQGTYICEIR 119
Query: 135 NPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGGVI 174
E+ + A + + + +E ++ VGG+I
Sbjct: 120 LKGESQVFKKAVVLHVLPEEPKE--------LMVHVGGLI 151
>gi|62865874 immunoglobulin superfamily, member 11 isoform a [Homo
sapiens]
Length = 430
Score = 37.7 bits (86), Expect = 0.008
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 27 VTLSLEVSVGKATDIYAVNGTEILLPCTFSSCFGFEDLHFRWTY----NSSDAFKILIEG 82
V SLEVS + I G +LPCTF++ +L+ W N++ ++++
Sbjct: 18 VAASLEVSESPGS-IQVARGQPAVLPCTFTTSAALINLNVIWMVTPLSNANQPEQVILYQ 76
Query: 83 TVKNEKSDPKVTLKDDDRITLVGSTKEKMNNISIVLRDLEFSDTGKYTCHVKN 135
+ P+ R+ G+ N+SI + + + SDTG Y C V N
Sbjct: 77 GGQMFDGAPRF----HGRVGFTGTMPA--TNVSIFINNTQLSDTGTYQCLVNN 123
>gi|21686977 cell adhesion molecule 4 [Homo sapiens]
Length = 388
Score = 37.4 bits (85), Expect = 0.011
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Query: 115 SIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGGVI 174
++ L L +D G YTC N H +++ VV V T + A+VGG++
Sbjct: 275 TLTLPGLVSADNGTYTCEASNKHG----HARALYVLVVYDPGAVVEAQTSVPYAIVGGIL 330
Query: 175 GLLILILLIKKLIIFILKKTREKKKECLVSSSGNDNTE-------NGLPGSKAEEK 223
LL+ L+I L+ + R+K +SG D NG G K +E+
Sbjct: 331 ALLV-FLIICVLVGMVWCSVRQKGSYLTHEASGLDEQGEAREAFLNGSDGHKRKEE 385
>gi|13186249 fibroblast growth factor receptor 1 isoform 9 precursor
[Homo sapiens]
Length = 785
Score = 37.0 bits (84), Expect = 0.014
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 104 VGSTKEKMNNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVT 163
V +T ++M + LR++ F D G+YTC N L HH+ +L V++ LEE +T
Sbjct: 316 VNTTDKEMEVLH--LRNVSFEDAGEYTCLAGN--SIGLSHHSA-WLTVLEALEERPAVMT 370
Query: 164 L-IILAVVGGVIGLLILILLIKKLIIFILKKTREK 197
+ L ++ G ++ ++ +I++ +K +K
Sbjct: 371 SPLYLEIIIYCTGAFLISCMVGSVIVYKMKSGTKK 405
Score = 28.5 bits (62), Expect = 5.0
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 96 KDDDRITLVGSTKEKMNNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDR 154
K D RI G K + SI++ + SD G YTC V+N + ++ H T L VV+R
Sbjct: 198 KPDHRI---GGYKVRYATWSIIMDSVVPSDKGNYTCIVEN-EYGSINH--TYQLDVVER 250
>gi|13186236 fibroblast growth factor receptor 1 isoform 4 precursor
[Homo sapiens]
Length = 731
Score = 37.0 bits (84), Expect = 0.014
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 104 VGSTKEKMNNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVT 163
V +T ++M + LR++ F D G+YTC N L HH+ +L V++ LEE +T
Sbjct: 225 VNTTDKEMEVLH--LRNVSFEDAGEYTCLAGN--SIGLSHHSA-WLTVLEALEERPAVMT 279
Query: 164 L-IILAVVGGVIGLLILILLIKKLIIFILKKTREK 197
+ L ++ G ++ ++ +I++ +K +K
Sbjct: 280 SPLYLEIIIYCTGAFLISCMVGSVIVYKMKSGTKK 314
Score = 28.5 bits (62), Expect = 5.0
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 96 KDDDRITLVGSTKEKMNNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDR 154
K D RI G K + SI++ + SD G YTC V+N + ++ H T L VV+R
Sbjct: 107 KPDHRI---GGYKVRYATWSIIMDSVVPSDKGNYTCIVEN-EYGSINH--TYQLDVVER 159
>gi|13186234 fibroblast growth factor receptor 1 isoform 3 precursor
[Homo sapiens]
Length = 733
Score = 37.0 bits (84), Expect = 0.014
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 104 VGSTKEKMNNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVT 163
V +T ++M + LR++ F D G+YTC N L HH+ +L V++ LEE +T
Sbjct: 227 VNTTDKEMEVLH--LRNVSFEDAGEYTCLAGN--SIGLSHHSA-WLTVLEALEERPAVMT 281
Query: 164 L-IILAVVGGVIGLLILILLIKKLIIFILKKTREK 197
+ L ++ G ++ ++ +I++ +K +K
Sbjct: 282 SPLYLEIIIYCTGAFLISCMVGSVIVYKMKSGTKK 316
Score = 28.5 bits (62), Expect = 5.0
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 96 KDDDRITLVGSTKEKMNNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDR 154
K D RI G K + SI++ + SD G YTC V+N + ++ H T L VV+R
Sbjct: 109 KPDHRI---GGYKVRYATWSIIMDSVVPSDKGNYTCIVEN-EYGSINH--TYQLDVVER 161
>gi|13186251 fibroblast growth factor receptor 1 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 37.0 bits (84), Expect = 0.014
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 104 VGSTKEKMNNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVT 163
V +T ++M + LR++ F D G+YTC N L HH+ +L V++ LEE +T
Sbjct: 314 VNTTDKEMEVLH--LRNVSFEDAGEYTCLAGN--SIGLSHHSA-WLTVLEALEERPAVMT 368
Query: 164 L-IILAVVGGVIGLLILILLIKKLIIFILKKTREK 197
+ L ++ G ++ ++ +I++ +K +K
Sbjct: 369 SPLYLEIIIYCTGAFLISCMVGSVIVYKMKSGTKK 403
Score = 28.5 bits (62), Expect = 5.0
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 96 KDDDRITLVGSTKEKMNNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDR 154
K D RI G K + SI++ + SD G YTC V+N + ++ H T L VV+R
Sbjct: 196 KPDHRI---GGYKVRYATWSIIMDSVVPSDKGNYTCIVEN-EYGSINH--TYQLDVVER 248
>gi|105990522 fibroblast growth factor receptor 1 isoform 1
precursor [Homo sapiens]
Length = 822
Score = 37.0 bits (84), Expect = 0.014
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 104 VGSTKEKMNNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVT 163
V +T ++M + LR++ F D G+YTC N L HH+ +L V++ LEE +T
Sbjct: 316 VNTTDKEMEVLH--LRNVSFEDAGEYTCLAGN--SIGLSHHSA-WLTVLEALEERPAVMT 370
Query: 164 L-IILAVVGGVIGLLILILLIKKLIIFILKKTREK 197
+ L ++ G ++ ++ +I++ +K +K
Sbjct: 371 SPLYLEIIIYCTGAFLISCMVGSVIVYKMKSGTKK 405
Score = 28.5 bits (62), Expect = 5.0
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 96 KDDDRITLVGSTKEKMNNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDR 154
K D RI G K + SI++ + SD G YTC V+N + ++ H T L VV+R
Sbjct: 198 KPDHRI---GGYKVRYATWSIIMDSVVPSDKGNYTCIVEN-EYGSINH--TYQLDVVER 250
>gi|166197658 butyrophilin, subfamily 1, member A1 [Homo sapiens]
Length = 526
Score = 37.0 bits (84), Expect = 0.014
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 35 VGKATDIYAVNGTEILLPCTFSSCFGFEDLHFRWTYNS-SDAFKILIEGTVKNEKSDPKV 93
+G I AV G + LPC S E L RW S A + +G + + P+
Sbjct: 32 IGPPEPILAVVGEDAELPCRLSPNASAEHLELRWFRKKVSPAVLVHRDGREQEAEQMPEY 91
Query: 94 TLKDDDRITLVGSTKEKMNNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQV 151
R TLV K +++ +R + SD G+YTC +E+ A + L+V
Sbjct: 92 R----GRATLVQDGIAK-GRVALRIRGVRVSDDGEYTCFF---REDGSYEEALVHLKV 141
>gi|222144233 fibroblast growth factor receptor 2 isoform 4
precursor [Homo sapiens]
Length = 709
Score = 36.6 bits (83), Expect = 0.018
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 104 VGSTKEKMNNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVT 163
+G K + + S+++ + SD G YTC V+N + ++ H T L VV E + T +
Sbjct: 204 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN-EYGSINH--TYHLDVVAPGREKEITAS 260
Query: 164 LIILAVVGGVIGLLILILLIKKLIIFILKKTREK 197
L + IG+ ++ ++ +I+ +K T +K
Sbjct: 261 PDYLEIAIYCIGVFLIACMVVTVILCRMKNTTKK 294
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.138 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,892,891
Number of Sequences: 37866
Number of extensions: 373642
Number of successful extensions: 2005
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 149
Number of HSP's that attempted gapping in prelim test: 1669
Number of HSP's gapped (non-prelim): 470
length of query: 228
length of database: 18,247,518
effective HSP length: 99
effective length of query: 129
effective length of database: 14,498,784
effective search space: 1870343136
effective search space used: 1870343136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.