Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FGFR1 Sequence: fasta or formatted (822aa) NCBI GI: 105990522
Description:

fibroblast growth factor receptor 1 isoform 1 precursor

Referenced in:

Fibroblast Growth Factors

Other entries for this name:
alt prot [733aa] fibroblast growth factor receptor 1 isoform 3 precursor
alt prot [731aa] fibroblast growth factor receptor 1 isoform 4 precursor
alt prot [302aa] fibroblast growth factor receptor 1 isoform 5 precursor
alt prot [300aa] fibroblast growth factor receptor 1 isoform 6 precursor
alt prot [785aa] fibroblast growth factor receptor 1 isoform 9 precursor
alt prot [820aa] fibroblast growth factor receptor 1 isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         49           2
 C cysteine            2.3         19           1
 D aspartate           6.1         50           7
 E glutamate           6.7         55           2
 F phenylalanine       2.2         18           1
 G glycine             5.7         47           2
 H histidine           2.7         22           2
 I isoleucine          3.9         32           3
 K lysine              6.0         49           2
 L leucine             9.9         81           2
 M methionine          3.0         25           3
 N asparagine          3.8         31           1
 P proline             6.9         57           2
 Q glutamine           2.9         24           1
 R arginine            4.9         40           2
 S serine              9.0         74           3
 T threonine           5.1         42           2
 V valine              7.7         63           2
 W tryptophan          1.8         15           1
 Y tyrosine            3.5         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fibroblast growth factor receptor 1 isoform 1 precu... 
FGFR1                 0.995   fibroblast growth factor receptor 1 isoform 2 precur...
FGFR1                 0.940   fibroblast growth factor receptor 1 isoform 9 precur...
FGFR1                 0.853   fibroblast growth factor receptor 1 isoform 3 precur...
FGFR1                 0.847   fibroblast growth factor receptor 1 isoform 4 precur...
FGFR2                 0.712   fibroblast growth factor receptor 2 isoform 1 precu...
FGFR2                 0.684   fibroblast growth factor receptor 2 isoform 2 precu...
FGFR2                 0.655   fibroblast growth factor receptor 2 isoform 6 precu...
FGFR2                 0.649   fibroblast growth factor receptor 2 isoform 8 precu...
FGFR2                 0.638   fibroblast growth factor receptor 2 isoform 3 precu...
FGFR2                 0.620   fibroblast growth factor receptor 2 isoform 5 precu...
FGFR3                 0.593   fibroblast growth factor receptor 3 isoform 1 precurs...
FGFR2                 0.589   fibroblast growth factor receptor 2 isoform 9 precu...
FGFR3                 0.557   fibroblast growth factor receptor 3 isoform 3 precu...
FGFR4                 0.517   fibroblast growth factor receptor 4 isoform 1 precur...
FGFR4                 0.517   fibroblast growth factor receptor 4 isoform 1 precur...
FGFR4                 0.501   fibroblast growth factor receptor 4 isoform 2 precur...
FGFR2                 0.456   fibroblast growth factor receptor 2 isoform 4 precu...
FGFR2                 0.408   fibroblast growth factor receptor 2 isoform 7 precu...
FGFR3                 0.368   fibroblast growth factor receptor 3 isoform 2 precur...
FGFR1                 0.231   fibroblast growth factor receptor 1 isoform 5 precur...
FGFR1                 0.226   fibroblast growth factor receptor 1 isoform 6 precur...
KDR                   0.186   kinase insert domain receptor precursor 
RET                   0.183   ret proto-oncogene isoform c 
RET                   0.183   ret proto-oncogene isoform a 
FLT1                  0.178   fms-related tyrosine kinase 1 isoform 1 precursor [...
KIT                   0.147   v-kit Hardy-Zuckerman 4 feline sarcoma viral oncoge...
KIT                   0.146   v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene...
TIE1                  0.136   tyrosine kinase with immunoglobulin-like and EGF-like...
TEK                   0.132   TEK tyrosine kinase, endothelial precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press