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Search of human proteins with 27777671
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27777671 keratinocyte associated protein 3 [Homo sapiens]
(240 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27777671 keratinocyte associated protein 3 [Homo sapiens] 479 e-136
gi|15723380 transmembrane protein 54 [Homo sapiens] 128 4e-30
gi|239755193 PREDICTED: hypothetical protein [Homo sapiens] 32 0.38
gi|239749690 PREDICTED: hypothetical protein XP_002347120 [Homo ... 32 0.38
gi|239743958 PREDICTED: hypothetical protein XP_002344281 [Homo ... 32 0.38
gi|28875799 cholecystokinin B receptor [Homo sapiens] 32 0.38
gi|156104886 CC chemokine receptor 10 [Homo sapiens] 32 0.49
gi|239755836 PREDICTED: hypothetical protein LOC440104 isoform 1... 30 1.9
gi|239750337 PREDICTED: similar to RIKEN cDNA 1110012D08 [Homo s... 30 1.9
gi|239744643 PREDICTED: hypothetical protein LOC440104 [Homo sap... 30 1.9
gi|4557257 adenylate cyclase 8 [Homo sapiens] 30 1.9
gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens] 30 2.4
gi|34577102 ring finger protein 14 isoform 1 [Homo sapiens] 30 2.4
gi|34577100 ring finger protein 14 isoform 1 [Homo sapiens] 30 2.4
gi|34577098 ring finger protein 14 isoform 1 [Homo sapiens] 30 2.4
gi|34577096 ring finger protein 14 isoform 2 [Homo sapiens] 30 2.4
gi|4757762 ring finger protein 14 isoform 1 [Homo sapiens] 30 2.4
gi|4505697 pendrin [Homo sapiens] 29 3.2
gi|169217000 PREDICTED: similar to pro-pol protein [Homo sapiens] 29 4.2
gi|169216817 PREDICTED: similar to pro-pol protein [Homo sapiens] 29 4.2
gi|226246608 RNA polymerase II associated protein 2 [Homo sapiens] 29 4.2
gi|75750529 ankyrin repeat and MYND domain containing 1 isoform ... 29 4.2
gi|53933276 olfactory receptor, family 5, subfamily H, member 14... 28 5.4
gi|6006001 glutathione peroxidase 3 precursor [Homo sapiens] 28 7.1
gi|57164951 non imprinted in Prader-Willi/Angelman syndrome 2 is... 28 7.1
gi|57013272 non imprinted in Prader-Willi/Angelman syndrome 2 is... 28 7.1
gi|57164953 non imprinted in Prader-Willi/Angelman syndrome 2 is... 28 7.1
gi|57013274 non imprinted in Prader-Willi/Angelman syndrome 2 is... 28 7.1
gi|193083134 melanocortin 1 receptor [Homo sapiens] 28 9.2
gi|239748247 PREDICTED: similar to hCG2036631 [Homo sapiens] 28 9.2
>gi|27777671 keratinocyte associated protein 3 [Homo sapiens]
Length = 240
Score = 479 bits (1233), Expect = e-136
Identities = 240/240 (100%), Positives = 240/240 (100%)
Query: 1 MRRCSLCAFDAARGPRRLMRVGLALILVGHVNLLLGAVLHGTVLRHVANPRGAVTPEYTV 60
MRRCSLCAFDAARGPRRLMRVGLALILVGHVNLLLGAVLHGTVLRHVANPRGAVTPEYTV
Sbjct: 1 MRRCSLCAFDAARGPRRLMRVGLALILVGHVNLLLGAVLHGTVLRHVANPRGAVTPEYTV 60
Query: 61 ANVISVGSGLLSVSVGLVTLLASRNLLRPPLHWVLLALALVNLLLSVACSLGLLLAVSLT 120
ANVISVGSGLLSVSVGLVTLLASRNLLRPPLHWVLLALALVNLLLSVACSLGLLLAVSLT
Sbjct: 61 ANVISVGSGLLSVSVGLVTLLASRNLLRPPLHWVLLALALVNLLLSVACSLGLLLAVSLT 120
Query: 121 VANGGRRLIADCHPGLLDPLVPLDEGPGHTDCPFDPTRIYDTALALWIPSLLMSAGEAAL 180
VANGGRRLIADCHPGLLDPLVPLDEGPGHTDCPFDPTRIYDTALALWIPSLLMSAGEAAL
Sbjct: 121 VANGGRRLIADCHPGLLDPLVPLDEGPGHTDCPFDPTRIYDTALALWIPSLLMSAGEAAL 180
Query: 181 SGYCCVAALTLRGVGPCRKDGLQGQLEEMTELESPKCKRQENEQLLDQNQEIRASQRSWV 240
SGYCCVAALTLRGVGPCRKDGLQGQLEEMTELESPKCKRQENEQLLDQNQEIRASQRSWV
Sbjct: 181 SGYCCVAALTLRGVGPCRKDGLQGQLEEMTELESPKCKRQENEQLLDQNQEIRASQRSWV 240
>gi|15723380 transmembrane protein 54 [Homo sapiens]
Length = 222
Score = 128 bits (322), Expect = 4e-30
Identities = 64/167 (38%), Positives = 102/167 (61%), Gaps = 6/167 (3%)
Query: 18 LMRVGLALILVGHVNLLLGAVLHGTVLRHVANPRGAVTPEYTVANVISVGSGLLSVSVGL 77
LM+ GL L+++GHV+ + A+ HGTVLR+V P+ AV +Y V N++SV S ++ ++ G+
Sbjct: 17 LMKTGLVLVVLGHVSFITAALFHGTVLRYVGTPQDAVALQYCVVNILSVTSAIVVITSGI 76
Query: 78 VTLLASRNLLRPPLHWVLLALALVNLLLSVACSLGLLLAVSLTVANGGRRLIADCHPGLL 137
++ SR L PL W + + ++ LLS+ C+LGLL ++++T A G+ L+A C G
Sbjct: 77 AAIVLSRYLPSTPLRWTVFSSSVACALLSLTCALGLLASIAMTFATQGKALLAACTFGSS 136
Query: 138 DPLVPLDEGPGHTDCPFDPTRIYDTALALWIPSLLMSAGEAALSGYC 184
+ L DCPFDPTRIY ++L LW +L++ E + C
Sbjct: 137 ELLALA------PDCPFDPTRIYSSSLCLWGIALVLCVAENVFAVRC 177
>gi|239755193 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 32.3 bits (72), Expect = 0.38
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 70 LLSVSVGLVTLLASRNLLRPPLHWVLLALALVNLLLSVACSLGLLLAVSLTVANGGRRLI 129
LL++++ LV LA L P L WVL L+L +A +L L+L ++L +
Sbjct: 55 LLALNLELVLELALAPGLEPALGWVL------ELVLELARALELVLELALVTELQEEKSS 108
Query: 130 ADCHPGLLDPLVPLDEGPGHTDCPF--DPTRIYDTALALWIPSLLMS 174
C P L L E P + P +P +Y L +P+ L++
Sbjct: 109 TTCQPFLC--LSKDTEQPRLPEKPLSPNPQNVYQATLLPVVPAFLLT 153
>gi|239749690 PREDICTED: hypothetical protein XP_002347120 [Homo
sapiens]
Length = 268
Score = 32.3 bits (72), Expect = 0.38
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 70 LLSVSVGLVTLLASRNLLRPPLHWVLLALALVNLLLSVACSLGLLLAVSLTVANGGRRLI 129
LL++++ LV LA L P L WVL L+L +A +L L+L ++L +
Sbjct: 55 LLALNLELVLELALAPGLEPALGWVL------ELVLELARALELVLELALVTELQEEKSS 108
Query: 130 ADCHPGLLDPLVPLDEGPGHTDCPF--DPTRIYDTALALWIPSLLMS 174
C P L L E P + P +P +Y L +P+ L++
Sbjct: 109 TTCQPFLC--LSKDTEQPRLPEKPLSPNPQNVYQATLLPVVPAFLLT 153
>gi|239743958 PREDICTED: hypothetical protein XP_002344281 [Homo
sapiens]
Length = 268
Score = 32.3 bits (72), Expect = 0.38
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 70 LLSVSVGLVTLLASRNLLRPPLHWVLLALALVNLLLSVACSLGLLLAVSLTVANGGRRLI 129
LL++++ LV LA L P L WVL L+L +A +L L+L ++L +
Sbjct: 55 LLALNLELVLELALAPGLEPALGWVL------ELVLELARALELVLELALVTELQEEKSS 108
Query: 130 ADCHPGLLDPLVPLDEGPGHTDCPF--DPTRIYDTALALWIPSLLMS 174
C P L L E P + P +P +Y L +P+ L++
Sbjct: 109 TTCQPFLC--LSKDTEQPRLPEKPLSPNPQNVYQATLLPVVPAFLLT 153
>gi|28875799 cholecystokinin B receptor [Homo sapiens]
Length = 447
Score = 32.3 bits (72), Expect = 0.38
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 51 RGAVTPEYTVANVISVGSGLLSVSVG----LVTLLASRNLLRPPLHWVLLALALVNLLLS 106
RGA T E +A I++ + + +SVG ++ +L LR + LL+LA+ +LLL+
Sbjct: 45 RGAGTRELELAIRITLYAVIFLMSVGGNMLIIVVLGLSRRLRTVTNAFLLSLAVSDLLLA 104
Query: 107 VAC 109
VAC
Sbjct: 105 VAC 107
>gi|156104886 CC chemokine receptor 10 [Homo sapiens]
Length = 362
Score = 32.0 bits (71), Expect = 0.49
Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 18/129 (13%)
Query: 59 TVANVISVGSGLLSVSVGLVTLLASRNLLRPPLHWVLLALALVNLLLSVA---CSLGLLL 115
TVA + G+GL+ L T LA+R R P LL LAL +LLL++ + G L
Sbjct: 50 TVAALGLAGNGLV-----LATHLAARRAARSPTSAHLLQLALADLLLALTLPFAAAGALQ 104
Query: 116 AVSL---TVANGGRRLIADCHPGLL-------DPLVPLDEGPGHTDCPFDPTRIYDTALA 165
SL T A H G L D V + P P R + ++
Sbjct: 105 GWSLGSATCRTISGLYSASFHAGFLFLACISADRYVAIARALPAGPRPSTPGRAHLVSVI 164
Query: 166 LWIPSLLMS 174
+W+ SLL++
Sbjct: 165 VWLLSLLLA 173
>gi|239755836 PREDICTED: hypothetical protein LOC440104 isoform 1
[Homo sapiens]
Length = 105
Score = 30.0 bits (66), Expect = 1.9
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 70 LLSVSVGLVTLLASRNLLRPPLHWV----LLALALVNLLLSV 107
LL +++G LLAS + +PP WV L+ LAL+ LL++
Sbjct: 14 LLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTL 55
>gi|239750337 PREDICTED: similar to RIKEN cDNA 1110012D08 [Homo
sapiens]
Length = 105
Score = 30.0 bits (66), Expect = 1.9
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 70 LLSVSVGLVTLLASRNLLRPPLHWV----LLALALVNLLLSV 107
LL +++G LLAS + +PP WV L+ LAL+ LL++
Sbjct: 14 LLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTL 55
>gi|239744643 PREDICTED: hypothetical protein LOC440104 [Homo
sapiens]
Length = 105
Score = 30.0 bits (66), Expect = 1.9
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 70 LLSVSVGLVTLLASRNLLRPPLHWV----LLALALVNLLLSV 107
LL +++G LLAS + +PP WV L+ LAL+ LL++
Sbjct: 14 LLGLTLGAGALLASEPIYQPPSAWVPAGGLVGLALLGALLTL 55
>gi|4557257 adenylate cyclase 8 [Homo sapiens]
Length = 1251
Score = 30.0 bits (66), Expect = 1.9
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 66 VGSGLLSVSVGLV--TLLASRNLLRPPLHWVLLA---LALVNLLLSVACSLGLLLAVSLT 120
+G GLL +G V TL A+ ++L PL W +LA +L+ ++L V +++++
Sbjct: 262 LGYGLLGDGIGYVLFTLFATYSMLPLPLTWAILAGLGTSLLQVILQVVIPRLAVISINQV 321
Query: 121 VA 122
VA
Sbjct: 322 VA 323
>gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens]
Length = 1235
Score = 29.6 bits (65), Expect = 2.4
Identities = 50/149 (33%), Positives = 68/149 (45%), Gaps = 18/149 (12%)
Query: 68 SGLLSVSVGLVTLLASRNLLRPPLHWVLLALALVNLLLSVACSLGLLLAVS-------LT 120
+ LL++ VGLV L AS LL LH L +L LLL+ +LG +L +S +
Sbjct: 987 AALLALEVGLVGLGASYLLLCTALH---LPSSLF-LLLAQGTALGAVLGLSWRRGLMGVP 1042
Query: 121 VANGGRRLIADCHPGLLDPLVPLDEGPGHTDCPFDPTRIYDTALALWIPSLLMSAGEA-- 178
+ G L+A PGL PLV + G G P R+ LW+ LL + A
Sbjct: 1043 LGLGAAWLLA--WPGLALPLVAMAAG-GRWVRQQGP-RVRRGISRLWLRVLLRLSPMAFR 1098
Query: 179 ALSGYCCVAALTLRGVGP-CRKDGLQGQL 206
AL G V L + P KDG + +L
Sbjct: 1099 ALQGCGAVGDRGLFALYPKTNKDGFRSRL 1127
>gi|34577102 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 29.6 bits (65), Expect = 2.4
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 169 PSLLMSAGEAALSGYCCVAALTLRGVGPCRKDGLQGQLEEMTELESPKCKRQE-NEQLLD 227
P M + +C + LT GV PC+ E++ +L + + E N++LLD
Sbjct: 322 PGCTMGICSSCNFAFCTLCRLTYHGVSPCKVTA-----EKLMDLRNEYLQADEANKRLLD 376
Query: 228 QNQEIRASQRS 238
Q R Q++
Sbjct: 377 QRYGKRVIQKA 387
>gi|34577100 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 29.6 bits (65), Expect = 2.4
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 169 PSLLMSAGEAALSGYCCVAALTLRGVGPCRKDGLQGQLEEMTELESPKCKRQE-NEQLLD 227
P M + +C + LT GV PC+ E++ +L + + E N++LLD
Sbjct: 322 PGCTMGICSSCNFAFCTLCRLTYHGVSPCKVTA-----EKLMDLRNEYLQADEANKRLLD 376
Query: 228 QNQEIRASQRS 238
Q R Q++
Sbjct: 377 QRYGKRVIQKA 387
>gi|34577098 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 29.6 bits (65), Expect = 2.4
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 169 PSLLMSAGEAALSGYCCVAALTLRGVGPCRKDGLQGQLEEMTELESPKCKRQE-NEQLLD 227
P M + +C + LT GV PC+ E++ +L + + E N++LLD
Sbjct: 322 PGCTMGICSSCNFAFCTLCRLTYHGVSPCKVTA-----EKLMDLRNEYLQADEANKRLLD 376
Query: 228 QNQEIRASQRS 238
Q R Q++
Sbjct: 377 QRYGKRVIQKA 387
>gi|34577096 ring finger protein 14 isoform 2 [Homo sapiens]
Length = 348
Score = 29.6 bits (65), Expect = 2.4
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 169 PSLLMSAGEAALSGYCCVAALTLRGVGPCRKDGLQGQLEEMTELESPKCKRQE-NEQLLD 227
P M + +C + LT GV PC+ E++ +L + + E N++LLD
Sbjct: 196 PGCTMGICSSCNFAFCTLCRLTYHGVSPCKVTA-----EKLMDLRNEYLQADEANKRLLD 250
Query: 228 QNQEIRASQRS 238
Q R Q++
Sbjct: 251 QRYGKRVIQKA 261
>gi|4757762 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 29.6 bits (65), Expect = 2.4
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 169 PSLLMSAGEAALSGYCCVAALTLRGVGPCRKDGLQGQLEEMTELESPKCKRQE-NEQLLD 227
P M + +C + LT GV PC+ E++ +L + + E N++LLD
Sbjct: 322 PGCTMGICSSCNFAFCTLCRLTYHGVSPCKVTA-----EKLMDLRNEYLQADEANKRLLD 376
Query: 228 QNQEIRASQRS 238
Q R Q++
Sbjct: 377 QRYGKRVIQKA 387
>gi|4505697 pendrin [Homo sapiens]
Length = 780
Score = 29.3 bits (64), Expect = 3.2
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 11 AARGPRRLMRVGLALILVGHVNLLLGAVLHGTVLRHVANP 50
AAR R++ +LVG + L+ G + G ++R++A+P
Sbjct: 179 AARDTARVLIASALTLLVGIIQLIFGGLQIGFIVRYLADP 218
>gi|169217000 PREDICTED: similar to pro-pol protein [Homo sapiens]
Length = 310
Score = 28.9 bits (63), Expect = 4.2
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 161 DTALALWIP--SLLMSAGEAALSGYCCVAALTLRGVGPCRKDGLQGQLEEMTELESPKCK 218
DTA L +P S S A + G C V LT +G+GPC L QL ++T L P C
Sbjct: 224 DTASTLALPDSSQPFSLHTAEVQG-CAVGILT-QGLGPCPVAFLSKQL-DLTVLGWPSCL 280
Query: 219 RQENEQLLDQN 229
R ++ + N
Sbjct: 281 RVASDPIALDN 291
>gi|169216817 PREDICTED: similar to pro-pol protein [Homo sapiens]
Length = 310
Score = 28.9 bits (63), Expect = 4.2
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 161 DTALALWIP--SLLMSAGEAALSGYCCVAALTLRGVGPCRKDGLQGQLEEMTELESPKCK 218
DTA L +P S S A + G C V LT +G+GPC L QL ++T L P C
Sbjct: 224 DTASTLALPDSSQPFSLHTAEVQG-CAVGILT-QGLGPCPVAFLSKQL-DLTVLGWPSCL 280
Query: 219 RQENEQLLDQN 229
R ++ + N
Sbjct: 281 RVASDPIALDN 291
>gi|226246608 RNA polymerase II associated protein 2 [Homo sapiens]
Length = 612
Score = 28.9 bits (63), Expect = 4.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 81 LASRNLLRPPLHWVLLALALVNLLLSV 107
L +RN++ P W L+A+ L++LL +
Sbjct: 541 LTNRNIIHKPAEWTLIAMVLLSLLTPI 567
>gi|75750529 ankyrin repeat and MYND domain containing 1 isoform 1
[Homo sapiens]
Length = 941
Score = 28.9 bits (63), Expect = 4.2
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 100 LVNLLLSVACSLGLLLA----VSLTVANGGRRLIADCHPGLLDPLVPLDEGPGHT----- 150
+V LLLS + LL + +SL++A+G ++ + DP +PL +G G
Sbjct: 678 IVRLLLSHGANPNLLWSGHSPLSLSIASGNELVVKELLTQGADPNLPLTKGLGSALCVAC 737
Query: 151 DCPFDPTRIYDTALAL 166
D ++ R D+ LAL
Sbjct: 738 DLTYEHQRNMDSKLAL 753
>gi|53933276 olfactory receptor, family 5, subfamily H, member 14
[Homo sapiens]
Length = 310
Score = 28.5 bits (62), Expect = 5.4
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 74 SVGLVTLLASRNLLRPPLHWVLLALALVNLLLSVACSLGLLLAVSLTVANGGRRLIADCH 133
++GL+ ++ L P++ +L LA V+ LLS + +L +L+ +A +++C
Sbjct: 42 NLGLIAVIWKDPHLHIPMYLLLGNLAFVDALLSSSVTLKMLINF---LAKSKMISLSECK 98
Query: 134 PGLLDPLVPLDEGPGHTDCPFDPTRIYDTALALWIPSLLMSAGEAALSGYCCVAALTLRG 193
L + + T+C T YD +A+ P L A ++ C+ L L
Sbjct: 99 IQLFSFAISVT-----TECFLLATMAYDRYVAICKPLLY----PAIMTNGLCIRLLILSY 149
Query: 194 VG 195
VG
Sbjct: 150 VG 151
>gi|6006001 glutathione peroxidase 3 precursor [Homo sapiens]
Length = 226
Score = 28.1 bits (61), Expect = 7.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 104 LLSVACSLGLLLAVSLTVANGGRRLIADCHPGL 136
LL +C L LLLA ++ + G + DCH G+
Sbjct: 4 LLQASCLLSLLLAGFVSQSRGQEKSKMDCHGGI 36
>gi|57164951 non imprinted in Prader-Willi/Angelman syndrome 2
isoform b [Homo sapiens]
Length = 341
Score = 28.1 bits (61), Expect = 7.1
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 38 VLHGTVLRHVANPRGAVTPEYTVANVISVGSGLLSVS------VGLVTLLASRNLLRPPL 91
V+ +L V PR T + SV G SVS + + L A + +LR PL
Sbjct: 140 VIVALILIFVVGPRHGQTNILVYITICSV-IGAFSVSCVKGLGIAIKELFAGKPVLRHPL 198
Query: 92 HWVLLALALV 101
W+LL +V
Sbjct: 199 AWILLLSLIV 208
>gi|57013272 non imprinted in Prader-Willi/Angelman syndrome 2
isoform a [Homo sapiens]
Length = 360
Score = 28.1 bits (61), Expect = 7.1
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 38 VLHGTVLRHVANPRGAVTPEYTVANVISVGSGLLSVS------VGLVTLLASRNLLRPPL 91
V+ +L V PR T + SV G SVS + + L A + +LR PL
Sbjct: 159 VIVALILIFVVGPRHGQTNILVYITICSV-IGAFSVSCVKGLGIAIKELFAGKPVLRHPL 217
Query: 92 HWVLLALALV 101
W+LL +V
Sbjct: 218 AWILLLSLIV 227
>gi|57164953 non imprinted in Prader-Willi/Angelman syndrome 2
isoform a [Homo sapiens]
Length = 360
Score = 28.1 bits (61), Expect = 7.1
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 38 VLHGTVLRHVANPRGAVTPEYTVANVISVGSGLLSVS------VGLVTLLASRNLLRPPL 91
V+ +L V PR T + SV G SVS + + L A + +LR PL
Sbjct: 159 VIVALILIFVVGPRHGQTNILVYITICSV-IGAFSVSCVKGLGIAIKELFAGKPVLRHPL 217
Query: 92 HWVLLALALV 101
W+LL +V
Sbjct: 218 AWILLLSLIV 227
>gi|57013274 non imprinted in Prader-Willi/Angelman syndrome 2
isoform a [Homo sapiens]
Length = 360
Score = 28.1 bits (61), Expect = 7.1
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 38 VLHGTVLRHVANPRGAVTPEYTVANVISVGSGLLSVS------VGLVTLLASRNLLRPPL 91
V+ +L V PR T + SV G SVS + + L A + +LR PL
Sbjct: 159 VIVALILIFVVGPRHGQTNILVYITICSV-IGAFSVSCVKGLGIAIKELFAGKPVLRHPL 217
Query: 92 HWVLLALALV 101
W+LL +V
Sbjct: 218 AWILLLSLIV 227
>gi|193083134 melanocortin 1 receptor [Homo sapiens]
Length = 317
Score = 27.7 bits (60), Expect = 9.2
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 48 ANPRGAVTPEYTVANVISVGSGLLSV---SVGLVTLLASRNLLRPPLHWVLLALALVNLL 104
AN GA E ++++ + + GL+S+ ++ + T+ +RNL P++ + LAL +LL
Sbjct: 28 ANQTGARCLEVSISDGLFLSLGLVSLVENALVVATIAKNRNL-HSPMYCFICCLALSDLL 86
Query: 105 LS 106
+S
Sbjct: 87 VS 88
>gi|239748247 PREDICTED: similar to hCG2036631 [Homo sapiens]
Length = 287
Score = 27.7 bits (60), Expect = 9.2
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 140 LVPLDEGPGHTDCPFDPTRIYDTALALW 167
L L E GHT CPF I D + LW
Sbjct: 111 LALLLELKGHTTCPFTTLEIIDCKMDLW 138
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,515,382
Number of Sequences: 37866
Number of extensions: 416528
Number of successful extensions: 1186
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1177
Number of HSP's gapped (non-prelim): 36
length of query: 240
length of database: 18,247,518
effective HSP length: 99
effective length of query: 141
effective length of database: 14,498,784
effective search space: 2044328544
effective search space used: 2044328544
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.