Guide to the Human Genome
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Name: LOC646730 Sequence: fasta or formatted (287aa) NCBI GI: 239748247
Description:

PREDICTED: similar to hCG2036631

Not currently referenced in the text

Other entries for this name:
alt mRNA {287aa} PREDICTED: similar to hCG2036631
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         15           1
 C cysteine            3.8         11           1
 D aspartate           4.2         12           1
 E glutamate           6.6         19           2
 F phenylalanine       2.8          8           1
 G glycine             8.0         23           1
 H histidine           1.4          4           1
 I isoleucine          5.9         17           2
 K lysine              5.2         15           1
 L leucine            16.0         46           3
 M methionine          2.1          6           1
 N asparagine          2.8          8           2
 P proline             7.3         21           2
 Q glutamine           5.6         16           1
 R arginine            4.5         13           1
 S serine              9.1         26           2
 T threonine           3.8         11           2
 V valine              3.1          9           1
 W tryptophan          0.7          2           1
 Y tyrosine            1.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2036631 
LOC646730             1.000   PREDICTED: similar to hCG2036631 
NLRX1                 0.029   NLR family member X1 isoform 1 
NLRP12                0.027   NLR family, pyrin domain containing 12 isoform 2 [Ho...
NLRX1                 0.025   NLR family member X1 isoform 2 
C14orf166B            0.016   hypothetical protein LOC145497 
BRDT                  0.013   testis-specific bromodomain protein 
BRDT                  0.013   testis-specific bromodomain protein 
FOXD2                 0.013   forkhead box D2 
LINGO4                0.013   leucine rich repeat and Ig domain containing 4 [Homo...
KCNH4                 0.013   potassium voltage-gated channel, subfamily H, member ...
TSPAN10               0.013   tetraspanin 10 
LRRC31                0.011   leucine rich repeat containing 31 
RNH1                  0.011   ribonuclease/angiogenin inhibitor 
RNH1                  0.011   ribonuclease/angiogenin inhibitor 
RNH1                  0.011   ribonuclease/angiogenin inhibitor 
RNH1                  0.011   ribonuclease/angiogenin inhibitor 
RNH1                  0.011   ribonuclease/angiogenin inhibitor 
RNH1                  0.011   ribonuclease/angiogenin inhibitor 
RNH1                  0.011   ribonuclease/angiogenin inhibitor 
RNH1                  0.011   ribonuclease/angiogenin inhibitor 
ZFP161                0.009   zinc finger protein 161 homolog 
ZFP161                0.009   zinc finger protein 161 homolog 
GPR155                0.009   G protein-coupled receptor 155 isoform 9 
GPR155                0.009   G protein-coupled receptor 155 isoform 10 
LOC401399             0.009   hypothetical protein LOC401399 
RGS14                 0.009   regulator of G-protein signalling 14 
ANXA11                0.007   annexin A11 
ANXA11                0.007   annexin A11 
ANXA11                0.007   annexin A11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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