Guide to the Human Genome
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Name: SLC26A4 Sequence: fasta or formatted (780aa) NCBI GI: 4505697
Description:

pendrin

Referenced in:

Auditory and Vestibular Functions
Kidney
Solute Carrier Families
Thyroid and Thyroid Hormone Receptor

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         59           3
 C cysteine            1.5         12           2
 D aspartate           4.4         34           2
 E glutamate           5.1         40           3
 F phenylalanine       5.1         40           2
 G glycine             6.4         50           2
 H histidine           0.8          6           1
 I isoleucine          9.2         72           2
 K lysine              5.1         40           2
 L leucine            11.2         87           2
 M methionine          1.5         12           1
 N asparagine          3.6         28           2
 P proline             4.1         32           2
 Q glutamine           4.0         31           3
 R arginine            3.8         30           2
 S serine              7.3         57           3
 T threonine           5.6         44           2
 V valine              9.7         76           2
 W tryptophan          0.8          6           1
 Y tyrosine            3.1         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pendrin 
SLC26A3               0.443   solute carrier family 26, member 3 
SLC26A6               0.353   solute carrier family 26, member 6 isoform 4 
SLC26A6               0.353   solute carrier family 26, member 6 isoform 1 
SLC26A6               0.351   solute carrier family 26, member 6 isoform 3 
SLC26A6               0.350   solute carrier family 26, member 6 isoform 2 
SLC26A5               0.345   prestin isoform a 
SLC26A5               0.335   prestin isoform b 
SLC26A9               0.292   solute carrier family 26, member 9 isoform a 
SLC26A9               0.292   solute carrier family 26, member 9 isoform b 
SLC26A2               0.282   solute carrier family 26 member 2 
SLC26A5               0.278   prestin isoform c 
SLC26A1               0.255   solute carrier family 26, member 1 isoform a 
SLC26A1               0.255   solute carrier family 26, member 1 isoform a 
SLC26A7               0.200   solute carrier family 26, member 7 isoform b 
SLC26A7               0.200   solute carrier family 26, member 7 isoform a 
SLC26A8               0.180   solute carrier family 26, member 8 isoform a 
SLC26A10              0.169   solute carrier family 26, member 10 
SLC26A5               0.165   prestin isoform d 
SLC26A9               0.128   solute carrier family 26, member 9 isoform c 
SLC26A11              0.102   solute carrier family 26, member 11 
SLC26A8               0.093   solute carrier family 26, member 8 isoform b 
SLC26A1               0.060   solute carrier family 26, member 1 isoform b 
TM7SF3                0.005   transmembrane 7 superfamily member 3 
ECE2                  0.003   endothelin converting enzyme 2 isoform C 
ECE2                  0.003   endothelin converting enzyme 2 isoform A 
MUC17                 0.003   mucin 17 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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